Experiment set3IT091 for Pseudomonas fluorescens FW300-N2E2

Compare to:

outer cut, LB soft agar motility assay

Genes with specific phenotypes:

  gene name fitness t score description  
Pf6N2E2_2563 -5.0 -15.2 FIG00953562: hypothetical protein compare
Pf6N2E2_2585 -4.9 -10.4 Flagellar hook-length control protein FliK conserved
Pf6N2E2_2622 -4.5 -13.0 Flagellar hook-associated protein FlgL conserved
Pf6N2E2_2575 -4.3 -10.1 Flagellar biosynthesis protein FlhF compare
Pf6N2E2_2710 -4.2 -5.6 FIG00953701: hypothetical protein compare
Pf6N2E2_2564 -4.2 -5.2 Positive regulator of CheA protein activity (CheW) conserved
Pf6N2E2_2569 -3.9 -8.0 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) conserved
Pf6N2E2_2573 -3.8 -8.6 RNA polymerase sigma factor for flagellar operon conserved
Pf6N2E2_2570 -3.8 -7.2 Signal transduction histidine kinase CheA (EC 2.7.3.-) conserved
Pf6N2E2_2602 -3.7 -8.9 Flagellin protein FlaA compare
Pf6N2E2_2600 -3.7 -11.8 Flagellar hook-associated protein FliD conserved
Pf6N2E2_2623 -3.5 -9.8 Flagellar hook-associated protein FlgK conserved
Pf6N2E2_2599 -3.3 -7.8 Flagellar biosynthesis protein FliS conserved
Pf6N2E2_2567 -3.1 -5.3 Flagellar motor rotation protein MotB conserved
Pf6N2E2_5589 -3.0 -6.4 Sodium-type flagellar protein motY precursor conserved
Pf6N2E2_2566 -2.9 -6.5 Chromosome (plasmid) partitioning protein ParA conserved
Pf6N2E2_2568 -2.8 -5.3 Flagellar motor rotation protein MotA conserved
Pf6N2E2_69 -2.4 -5.5 Probable type IV pilus assembly FimV-related transmembrane protein conserved
Pf6N2E2_2193 -2.4 -6.6 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
Pf6N2E2_2565 -2.3 -6.3 CheW domain protein conserved
Pf6N2E2_5893 -2.2 -6.0 FIG00956448: hypothetical protein conserved
Pf6N2E2_5693 -2.0 -5.4 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) conserved
Pf6N2E2_5184 -1.9 -7.1 Chromosome segregation ATPases conserved
Pf6N2E2_5129 -1.7 -8.2 ClpB protein conserved
Pf6N2E2_2399 -1.7 -5.5 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase compare
Pf6N2E2_583 -1.6 -7.0 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf6N2E2_582 -1.6 -5.4 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) compare
Pf6N2E2_5390 -1.5 -5.8 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf6N2E2_584 -1.4 -6.2 ABC transporter, periplasmic substrate-binding protein conserved
Pf6N2E2_2596 -1.3 -5.5 Flagellar sensor histidine kinase FleS conserved
Pf6N2E2_2305 -1.2 -6.1 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_4926 +1.2 7.7 hypothetical protein compare
Pf6N2E2_1678 +1.4 7.2 Major facilitator family transporter compare
Pf6N2E2_5278 +1.5 8.2 Signal transduction histidine kinase compare
Pf6N2E2_816 +1.5 6.4 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf6N2E2_4616 +1.7 7.5 type IV pilus biogenesis protein PilJ conserved
Pf6N2E2_2329 +1.8 8.9 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) conserved
Pf6N2E2_815 +2.4 13.9 Signal transduction histidine kinase compare
Pf6N2E2_5873 +2.4 8.6 FIG00953467: hypothetical protein compare
Pf6N2E2_3871 +2.4 15.9 FIG00553872: hypothetical protein compare
Pf6N2E2_818 +2.5 10.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5872 +2.7 8.7 Sensor histidine kinase/response regulator compare
Pf6N2E2_3508 +2.8 20.6 Probable two-component response regulator conserved
Pf6N2E2_3827 +3.0 7.1 FIG00955429: hypothetical protein conserved


Specific phenotypes for motility Agar across organisms