Experiment set3IT091 for Pseudomonas fluorescens FW300-N2E2

Compare to:

outer cut, LB soft agar motility assay

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2591 -5.9 -5.7 Flagellar assembly protein FliH compare
Pf6N2E2_2628 -5.8 -4.9 Flagellar basal-body rod protein FlgF compare
Pf6N2E2_2625 -5.6 -4.9 Flagellar P-ring protein FlgI compare
Pf6N2E2_2572 -5.5 -3.3 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_2590 -5.2 -11.1 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_4762 -5.1 -3.8 Biotin synthesis protein BioH compare
Pf6N2E2_2563 -5.0 -15.2 FIG00953562: hypothetical protein compare
Pf6N2E2_2585 -4.9 -10.4 Flagellar hook-length control protein FliK conserved
Pf6N2E2_2577 -4.9 -8.1 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_2580 -4.8 -4.7 Flagellar biosynthesis protein FliP compare
Pf6N2E2_4159 -4.7 -4.6 Cytochrome c4 compare
Pf6N2E2_2624 -4.6 -7.6 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
Pf6N2E2_3655 -4.5 -14.8 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_2622 -4.5 -13.0 Flagellar hook-associated protein FlgL conserved
Pf6N2E2_3791 -4.5 -9.5 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2318 -4.5 -9.9 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5014 -4.3 -1.3 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_2575 -4.3 -10.1 Flagellar biosynthesis protein FlhF compare
Pf6N2E2_2592 -4.3 -4.9 Flagellar motor switch protein FliG compare
Pf6N2E2_5150 -4.3 -6.5 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5691 -4.2 -7.4 Flagellar basal-body P-ring formation protein FlgA compare
Pf6N2E2_2317 -4.2 -5.0 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2710 -4.2 -5.6 FIG00953701: hypothetical protein compare
Pf6N2E2_2578 -4.2 -2.5 Flagellar biosynthesis protein FliR compare
Pf6N2E2_5697 -4.2 -15.7 Flagellar hook protein FlgE compare
Pf6N2E2_2564 -4.2 -5.2 Positive regulator of CheA protein activity (CheW) conserved
Pf6N2E2_5337 -4.1 -5.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2627 -4.1 -4.9 Flagellar basal-body rod protein FlgG compare
Pf6N2E2_5338 -4.1 -9.5 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2507 -4.1 -6.2 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_5339 -4.1 -6.8 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_3792 -4.1 -6.7 Glucans biosynthesis protein G precursor compare
Pf6N2E2_2574 -4.0 -2.4 Flagellar synthesis regulator FleN compare
Pf6N2E2_5694 -4.0 -6.8 Flagellar basal-body rod protein FlgB compare
Pf6N2E2_5527 -4.0 -2.7 Cold shock protein CspC compare
Pf6N2E2_4803 -3.9 -2.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2579 -3.9 -7.1 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_2576 -3.9 -11.4 Flagellar biosynthesis protein FlhA compare
Pf6N2E2_2626 -3.9 -7.8 Flagellar L-ring protein FlgH compare
Pf6N2E2_2569 -3.9 -8.0 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) conserved
Pf6N2E2_2573 -3.8 -8.6 RNA polymerase sigma factor for flagellar operon conserved
Pf6N2E2_5695 -3.8 -6.2 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_2825 -3.8 -2.6 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_2510 -3.8 -4.5 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_4418 -3.8 -1.2 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_2570 -3.8 -7.2 Signal transduction histidine kinase CheA (EC 2.7.3.-) conserved
Pf6N2E2_4153 -3.7 -1.9 Sensory box histidine kinase compare
Pf6N2E2_2602 -3.7 -8.9 Flagellin protein FlaA compare
Pf6N2E2_2600 -3.7 -11.8 Flagellar hook-associated protein FliD conserved
Pf6N2E2_5006 -3.7 -8.6 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2594 -3.6 -7.8 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_2583 -3.6 -5.4 Flagellar motor switch protein FliM compare
Pf6N2E2_2593 -3.6 -5.5 Flagellar M-ring protein FliF compare
Pf6N2E2_2320 -3.6 -4.3 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_3661 -3.6 -4.3 hypothetical protein compare
Pf6N2E2_2527 -3.6 -5.9 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_4205 -3.6 -4.2 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_4611 -3.5 -4.2 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2623 -3.5 -9.8 Flagellar hook-associated protein FlgK conserved
Pf6N2E2_2706 -3.5 -3.0 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_4204 -3.4 -2.1 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_2597 -3.4 -5.6 Flagellar regulatory protein FleQ compare
Pf6N2E2_2508 -3.4 -4.3 hypothetical protein compare
Pf6N2E2_2755 -3.4 -2.0 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2180 -3.4 -4.0 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_4451 -3.3 -5.4 FIG139438: lipoprotein B compare
Pf6N2E2_4454 -3.3 -7.1 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_75 -3.3 -4.0 Colicin V production protein compare
Pf6N2E2_2599 -3.3 -7.8 Flagellar biosynthesis protein FliS conserved
Pf6N2E2_2313 -3.3 -4.1 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_4057 -3.3 -1.0 lipoprotein, putative compare
Pf6N2E2_5705 -3.3 -2.7 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_5245 -3.3 -9.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3656 -3.2 -5.9 Probable transcription regulator Mig-14 compare
Pf6N2E2_2753 -3.2 -3.8 HtrA protease/chaperone protein compare
Pf6N2E2_2586 -3.2 -1.9 Hpt domain protein compare
Pf6N2E2_4352 -3.2 -3.8 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4077 -3.2 -2.4 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_2823 -3.2 -4.8 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_3677 -3.1 -10.6 Sensory box/GGDEF family protein compare
Pf6N2E2_4372 -3.1 -5.2 FIG00460773: hypothetical protein compare
Pf6N2E2_5340 -3.1 -4.7 Stringent starvation protein A compare
Pf6N2E2_3460 -3.1 -1.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5430 -3.1 -8.4 Transglycosylase, Slt family compare
Pf6N2E2_2567 -3.1 -5.3 Flagellar motor rotation protein MotB conserved
Pf6N2E2_5589 -3.0 -6.4 Sodium-type flagellar protein motY precursor conserved
Pf6N2E2_2708 -3.0 -5.2 Lactam utilization protein LamB compare
Pf6N2E2_6063 -2.9 -8.3 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_2514 -2.9 -5.1 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_2506 -2.9 -12.0 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_2311 -2.9 -8.5 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2566 -2.9 -6.5 Chromosome (plasmid) partitioning protein ParA conserved
Pf6N2E2_2568 -2.8 -5.3 Flagellar motor rotation protein MotA conserved
Pf6N2E2_2189 -2.8 -6.5 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5291 -2.8 -15.7 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_3617 -2.8 -3.7 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5242 -2.8 -2.7 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_445 -2.8 -6.6 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_2824 -2.7 -8.1 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_1136 -2.7 -1.8 Transcriptional regulator, TetR family compare
Pf6N2E2_2323 -2.7 -2.9 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_4416 -2.7 -3.2 Tyrosine recombinase XerC compare
Pf6N2E2_5520 -2.7 -7.3 Sensory box histidine kinase compare
Pf6N2E2_2513 -2.7 -4.3 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_282 -2.6 -1.4 GNAT family acetyltransferase YjcF compare
Pf6N2E2_5160 -2.6 -1.8 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_4206 -2.6 -1.5 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_3607 -2.6 -7.5 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3753 -2.6 -9.5 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_4759 -2.6 -11.6 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_5689 -2.6 -3.3 Flagellar biosynthesis protein FlgN compare
Pf6N2E2_3770 -2.6 -2.8 ATP-dependent hsl protease ATP-binding subunit HslU compare
Pf6N2E2_4889 -2.6 -6.1 Putative transport protein compare
Pf6N2E2_5155 -2.5 -3.4 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_2310 -2.5 -10.7 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_4764 -2.5 -3.4 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_69 -2.4 -5.5 Probable type IV pilus assembly FimV-related transmembrane protein conserved
Pf6N2E2_5342 -2.4 -3.2 21 kDa hemolysin precursor compare
Pf6N2E2_4631 -2.4 -7.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_5944 -2.4 -5.6 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_2428 -2.4 -2.7 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_5001 -2.4 -2.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2193 -2.4 -6.6 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data) compare
Pf6N2E2_5771 -2.4 -3.6 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_5679 -2.4 -4.0 hypothetical protein compare
Pf6N2E2_2565 -2.3 -6.3 CheW domain protein conserved
Pf6N2E2_2509 -2.3 -1.0 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_4273 -2.3 -6.1 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_2754 -2.3 -2.4 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_5768 -2.3 -3.8 DNA recombination-dependent growth factor C compare
Pf6N2E2_5963 -2.3 -4.3 lipoprotein, putative conserved
Pf6N2E2_2646 -2.3 -1.6 FIG00953416: hypothetical protein compare
Pf6N2E2_5346 -2.3 -2.7 rRNA small subunit methyltransferase I compare
Pf6N2E2_942 -2.3 -2.1 Mll6465 protein compare
Pf6N2E2_4585 -2.2 -8.7 Cell division protein FtsX compare
Pf6N2E2_5893 -2.2 -6.0 FIG00956448: hypothetical protein conserved
Pf6N2E2_5733 -2.2 -3.1 NLP/P60 family protein compare
Pf6N2E2_4084 -2.2 -5.7 Transcriptional regulator compare
Pf6N2E2_3658 -2.2 -7.5 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_156 -2.2 -2.0 Carbon storage regulator compare
Pf6N2E2_1625 -2.2 -3.2 Ferric reductase (1.6.99.14) compare
Pf6N2E2_746 -2.2 -1.3 FIG00958097: hypothetical protein compare
Pf6N2E2_3786 -2.2 -2.9 Twin-arginine translocation protein TatC compare
Pf6N2E2_4763 -2.2 -7.8 Biotin synthesis protein BioC compare
Pf6N2E2_1893 -2.2 -3.4 hypothetical protein compare
Pf6N2E2_4993 -2.2 -1.8 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_3844 -2.1 -1.6 hypothetical protein compare
Pf6N2E2_3667 -2.1 -1.6 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_4417 -2.1 -3.3 Protein of unknown function DUF484 compare
Pf6N2E2_3151 -2.1 -3.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_3257 -2.1 -3.5 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5156 -2.1 -2.5 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_58 -2.1 -1.9 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_2752 -2.1 -6.6 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_5068 -2.0 -7.9 putative Cytochrome bd2, subunit I compare
Pf6N2E2_3521 -2.0 -4.6 Sensor histidine kinase/response regulator compare
Pf6N2E2_2261 -2.0 -7.0 VacJ-like lipoprotein precursor compare
Pf6N2E2_2303 -2.0 -4.5 Aerotaxis receptor Aer conserved
Pf6N2E2_4353 -2.0 -3.9 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2277 -2.0 -1.9 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_4369 -2.0 -2.5 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4168 -2.0 -5.2 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf6N2E2_4545 -2.0 -1.5 hypothetical protein compare
Pf6N2E2_5693 -2.0 -5.4 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) conserved
Pf6N2E2_2074 -1.9 -1.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_5392 -1.9 -3.9 Molybdenum cofactor biosynthesis protein MoaC compare
Pf6N2E2_3807 -1.9 -4.2 Histidine utilization repressor compare
Pf6N2E2_3588 -1.9 -2.3 hypothetical protein compare
Pf6N2E2_5184 -1.9 -7.1 Chromosome segregation ATPases conserved
Pf6N2E2_2181 -1.9 -1.1 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2127 -1.9 -3.4 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_3039 -1.8 -4.5 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_5069 -1.8 -4.8 putative Cytochrome bd2, subunit II compare
Pf6N2E2_3984 -1.8 -7.1 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_4761 -1.8 -6.6 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_70 -1.8 -2.8 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_4276 -1.8 -4.8 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_2526 -1.8 -2.7 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_4279 -1.8 -6.5 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_5331 -1.7 -4.8 ATPase, AFG1 family compare
Pf6N2E2_4584 -1.7 -1.5 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_1056 -1.7 -1.0 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_1352 -1.7 -2.2 Cation transport ATPase compare
Pf6N2E2_4047 -1.7 -3.4 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_5129 -1.7 -8.2 ClpB protein conserved
Pf6N2E2_2274 -1.7 -3.2 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_350 -1.7 -1.9 Gfa-like protein compare
Pf6N2E2_4187 -1.7 -4.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4120 -1.7 -7.5 Trk system potassium uptake protein TrkA compare
Pf6N2E2_2399 -1.7 -5.5 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase compare
Pf6N2E2_4797 -1.7 -1.2 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_5739 -1.7 -1.3 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_583 -1.6 -7.0 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf6N2E2_84 -1.6 -1.3 hypothetical protein compare
Pf6N2E2_5178 -1.6 -1.4 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_4810 -1.6 -3.2 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_2571 -1.6 -3.4 Chemotaxis response - phosphatase CheZ compare
Pf6N2E2_2325 -1.6 -4.8 Recombination protein RecR compare
Pf6N2E2_4181 -1.6 -1.0 Organic hydroperoxide resistance protein compare
Pf6N2E2_582 -1.6 -5.4 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) compare


Specific Phenotypes

For 44 genes in this experiment

For motility Agar in Pseudomonas fluorescens FW300-N2E2

For motility Agar across organisms