Experiment set3IT091 for Pseudomonas fluorescens FW300-N2E2
outer cut, LB soft agar motility assay
Group: motilityMedia: LB + Agar (3 g/L)
Culturing: pseudo6_N2E2_ML5, Agar plate, Aerobic, at 30 (C), shaken=0 rpm, (Solid)
By: Mark on 3/14/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 44 genes in this experiment
For motility Agar in Pseudomonas fluorescens FW300-N2E2
For motility Agar across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Oxidative phosphorylation
- Purine metabolism
- Caffeine metabolism
- Valine, leucine and isoleucine degradation
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
Pathway | #Steps | #Present | #Specific |
---|---|---|---|
arsenite to oxygen electron transfer | 2 | 1 | 1 |
urate conversion to allantoin I | 3 | 2 | 1 |
arsenite to oxygen electron transfer (via azurin) | 3 | 1 | 1 |
aerobic respiration I (cytochrome c) | 4 | 3 | 1 |
aerobic respiration II (cytochrome c) (yeast) | 4 | 3 | 1 |
ferrichrome A biosynthesis | 5 | 3 | 1 |
L-leucine degradation I | 6 | 5 | 1 |
Fe(II) oxidation | 6 | 3 | 1 |
ureide biosynthesis | 7 | 6 | 1 |
superpathway of purines degradation in plants | 18 | 14 | 1 |