Experiment set3IT091 for Pseudomonas fluorescens FW300-N2E2

Compare to:

outer cut, LB soft agar motility assay

Group: motility
Media: LB + Agar (3 g/L)
Culturing: pseudo6_N2E2_ML5, Agar plate, Aerobic, at 30 (C), shaken=0 rpm, (Solid)
By: Mark on 3/14/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride

Specific Phenotypes

For 44 genes in this experiment

For motility Agar in Pseudomonas fluorescens FW300-N2E2

For motility Agar across organisms

SEED Subsystems

Subsystem #Specific
Flagellum 11
Bacterial Chemotaxis 6
Flagellar motility 6
Two-component regulatory systems in Campylobacter 3
ABC transporter oligopeptide (TC 3.A.1.5.1) 2
Bacterial Cytoskeleton 1
Bacterial hemoglobins 1
Benzoate transport and degradation cluster 1
Biogenesis of c-type cytochromes 1
Flagellum in Campylobacter 1
HMG CoA Synthesis 1
Leucine Degradation and HMG-CoA Metabolism 1
Periplasmic disulfide interchange 1
Plasmid replication 1
Protein chaperones 1
Proteolysis in bacteria, ATP-dependent 1
Terminal cytochrome C oxidases 1
Transcription initiation, bacterial sigma factors 1
Two cell division clusters relating to chromosome partitioning 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
arsenite to oxygen electron transfer 2 1 1
urate conversion to allantoin I 3 2 1
arsenite to oxygen electron transfer (via azurin) 3 1 1
aerobic respiration I (cytochrome c) 4 3 1
aerobic respiration II (cytochrome c) (yeast) 4 3 1
ferrichrome A biosynthesis 5 3 1
L-leucine degradation I 6 5 1
Fe(II) oxidation 6 3 1
ureide biosynthesis 7 6 1
superpathway of purines degradation in plants 18 14 1