Experiment set3IT091 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Urea nitrogen source

200 most important genes:

  gene name fitness t score description  
PFLU_RS01645 -6.3 -4.3 S41 family peptidase compare
PFLU_RS03645 -6.1 -11.7 tetratricopeptide repeat protein compare
PFLU_RS06320 -5.2 -3.6 OmpH family outer membrane protein compare
PFLU_RS14550 -5.2 -6.2 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS28695 -4.8 -7.3 phosphoglycerate dehydrogenase compare
PFLU_RS02490 -4.6 -13.1 phosphoserine phosphatase SerB compare
PFLU_RS26545 -4.3 -13.4 sel1 repeat family protein compare
PFLU_RS27365 -4.3 -11.0 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS29885 -4.3 -13.9 LysR family transcriptional regulator compare
PFLU_RS24485 -4.3 -17.2 hypothetical protein compare
PFLU_RS24125 -4.2 -5.0 cold-shock protein compare
PFLU_RS29875 -4.2 -18.5 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS20540 -4.1 -12.7 phosphoribosylanthranilate isomerase compare
PFLU_RS22740 -4.0 -3.9 phosphoadenylyl-sulfate reductase compare
PFLU_RS22105 -3.9 -5.4 cysteine synthase CysM compare
PFLU_RS23065 -3.9 -11.6 phosphate acyltransferase PlsX compare
PFLU_RS04070 -3.9 -4.6 peptide chain release factor 3 compare
PFLU_RS22595 -3.8 -2.6 OmpA family protein compare
PFLU_RS23585 -3.8 -10.6 GntP family permease compare
PFLU_RS03970 -3.8 -12.8 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS27370 -3.8 -14.9 anthranilate phosphoribosyltransferase compare
PFLU_RS12975 -3.7 -7.0 DUF934 domain-containing protein compare
PFLU_RS02050 -3.7 -20.3 NAD(P)-binding protein compare
PFLU_RS28645 -3.7 -16.6 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS02365 -3.7 -16.7 glycosyltransferase compare
PFLU_RS18505 -3.7 -12.5 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS25755 -3.6 -3.5 pantoate--beta-alanine ligase compare
PFLU_RS00175 -3.6 -8.4 tryptophan synthase subunit alpha compare
PFLU_RS22095 -3.6 -23.2 GTP diphosphokinase compare
PFLU_RS27440 -3.6 -9.3 nucleotidyltransferase family protein compare
PFLU_RS00180 -3.6 -9.6 tryptophan synthase subunit beta compare
PFLU_RS02045 -3.6 -25.1 glutamate synthase large subunit compare
PFLU_RS07785 -3.5 -10.5 VacJ family lipoprotein compare
PFLU_RS25760 -3.5 -15.6 glucose-6-phosphate isomerase compare
PFLU_RS08065 -3.5 -12.6 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS23070 -3.4 -1.8 50S ribosomal protein L32 compare
PFLU_RS01895 -3.4 -8.5 phosphoribosyl-ATP diphosphatase compare
PFLU_RS26640 -3.4 -12.0 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS28535 -3.4 -18.4 dihydroxy-acid dehydratase compare
PFLU_RS29880 -3.3 -15.1 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS04440 -3.3 -9.4 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS09055 -3.3 -2.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS26770 -3.3 -15.8 DedA family protein compare
PFLU_RS08155 -3.3 -3.2 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS12980 -3.3 -12.0 nitrite/sulfite reductase compare
PFLU_RS28165 -3.2 -14.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS08505 -3.2 -9.3 protease HtpX compare
PFLU_RS23310 -3.2 -10.6 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS03770 -3.2 -15.1 sulfate adenylyltransferase subunit CysN compare
PFLU_RS23305 -3.2 -13.3 arginine N-succinyltransferase compare
PFLU_RS25735 -3.2 -9.0 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS28655 -3.1 -16.6 HAD family hydrolase compare
PFLU_RS04435 -3.1 -8.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS25640 -3.1 -14.8 ketol-acid reductoisomerase compare
PFLU_RS03765 -3.1 -13.0 sulfate adenylyltransferase subunit CysD compare
PFLU_RS27640 -3.1 -2.5 alpha/beta fold hydrolase compare
PFLU_RS14810 -3.1 -3.5 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS20690 -3.0 -5.6 hypothetical protein compare
PFLU_RS23725 -3.0 -14.5 glucose-6-phosphate dehydrogenase compare
PFLU_RS29515 -3.0 -13.8 RidA family protein compare
PFLU_RS04430 -3.0 -9.2 ATP-binding cassette domain-containing protein compare
PFLU_RS04385 -3.0 -12.4 RNase adapter RapZ compare
PFLU_RS25360 -2.9 -9.1 glutamate 5-kinase compare
PFLU_RS01965 -2.9 -2.0 ATP-dependent protease subunit HslV compare
PFLU_RS24330 -2.8 -8.5 phosphogluconate dehydratase compare
PFLU_RS00415 -2.8 -1.9 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS29065 -2.8 -1.5 amino acid ABC transporter ATP-binding protein compare
PFLU_RS07695 -2.8 -3.7 beta-N-acetylhexosaminidase compare
PFLU_RS25730 -2.7 -18.4 PAS domain S-box protein compare
PFLU_RS20515 -2.7 -3.7 amidophosphoribosyltransferase compare
PFLU_RS24025 -2.7 -13.0 quinolinate synthase NadA compare
PFLU_RS04445 -2.7 -8.6 ABC transporter substrate-binding protein compare
PFLU_RS29095 -2.7 -20.1 polyphosphate kinase 1 compare
PFLU_RS07650 -2.6 -13.6 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS28965 -2.6 -12.2 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS05630 -2.6 -2.9 amino acid ABC transporter ATP-binding protein compare
PFLU_RS21995 -2.6 -4.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PFLU_RS09980 -2.5 -16.1 peptidase S41 compare
PFLU_RS25750 -2.5 -6.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS01625 -2.5 -3.6 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS28650 -2.5 -7.0 RNA pyrophosphohydrolase compare
PFLU_RS27635 -2.5 -11.5 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS01685 -2.5 -4.9 nitrogen regulation protein NR(I) compare
PFLU_RS18530 -2.4 -5.6 DNA translocase FtsK compare
PFLU_RS26595 -2.4 -1.7 lipoprotein compare
PFLU_RS01610 -2.4 -11.4 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS02790 -2.4 -2.1 TetR family transcriptional regulator compare
PFLU_RS24095 -2.3 -3.1 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS04315 -2.3 -4.8 rod shape-determining protein MreD compare
PFLU_RS22070 -2.3 -6.0 phosphoribosylglycinamide formyltransferase compare
PFLU_RS01910 -2.3 -3.0 sterol-binding protein compare
PFLU_RS27645 -2.3 -12.1 8-amino-7-oxononanoate synthase compare
PFLU_RS21300 -2.3 -7.6 cysteine hydrolase compare
PFLU_RS23590 -2.2 -2.3 gluconokinase compare
PFLU_RS12145 -2.2 -2.6 nuclear transport factor 2 family protein compare
PFLU_RS27620 -2.2 -15.0 acyl-CoA dehydrogenase compare
PFLU_RS13120 -2.2 -1.7 hypothetical protein compare
PFLU_RS04415 -2.2 -4.9 LPS export ABC transporter periplasmic protein LptC compare
PFLU_RS01615 -2.1 -5.6 DUF2164 domain-containing protein compare
PFLU_RS20510 -2.1 -12.2 O-succinylhomoserine sulfhydrylase compare
PFLU_RS27650 -2.1 -12.2 biotin synthase BioB compare
PFLU_RS27445 -2.1 -12.6 phosphotransferase compare
PFLU_RS28195 -2.1 -11.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS26905 -2.1 -9.7 transcriptional regulator NrdR compare
PFLU_RS07225 -2.1 -13.2 L-aspartate oxidase compare
PFLU_RS27305 -2.1 -6.3 anhydro-N-acetylmuramic acid kinase compare
PFLU_RS06055 -2.0 -1.4 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS25225 -2.0 -8.1 disulfide bond formation protein B compare
PFLU_RS03555 -2.0 -1.3 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS25815 -2.0 -1.6 transcription termination/antitermination protein NusA compare
PFLU_RS29310 -2.0 -1.8 accessory factor UbiK family protein compare
PFLU_RS25715 -2.0 -11.0 RNA polymerase-binding protein DksA compare
PFLU_RS28725 -2.0 -9.8 DUF2059 domain-containing protein compare
PFLU_RS31010 -1.9 -1.7 transposase compare
PFLU_RS08160 -1.9 -8.5 sugar transferase compare
PFLU_RS24085 -1.9 -4.5 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS21495 -1.9 -4.0 TlpA family protein disulfide reductase compare
PFLU_RS24090 -1.9 -3.6 Holliday junction branch migration protein RuvA compare
PFLU_RS26735 -1.9 -8.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS04470 -1.9 -10.2 histidinol dehydrogenase compare
PFLU_RS13540 -1.9 -4.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS24325 -1.9 -11.2 glucokinase compare
PFLU_RS04325 -1.9 -13.1 ribonuclease G compare
PFLU_RS19175 -1.9 -7.7 trigger factor compare
PFLU_RS31755 -1.9 -1.9 hypothetical protein compare
PFLU_RS18615 -1.9 -3.1 NADH-quinone oxidoreductase subunit A compare
PFLU_RS24475 -1.9 -13.9 AmpG family muropeptide MFS transporter compare
PFLU_RS27630 -1.8 -5.8 dethiobiotin synthase compare
PFLU_RS15410 -1.8 -2.8 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS28390 -1.8 -7.1 methionine biosynthesis protein MetW compare
PFLU_RS24785 -1.8 -8.7 outer membrane protein assembly factor BamB compare
PFLU_RS13715 -1.8 -1.8 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS28385 -1.8 -8.3 homoserine O-acetyltransferase compare
PFLU_RS01605 -1.8 -7.2 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS03980 -1.8 -6.2 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFLU_RS18645 -1.8 -2.9 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS07255 -1.7 -3.8 sulfurtransferase TusA family protein compare
PFLU_RS14335 -1.7 -3.1 ABC transporter permease compare
PFLU_RS06555 -1.7 -8.5 OmpA family protein compare
PFLU_RS02370 -1.7 -7.2 glycosyltransferase compare
PFLU_RS20580 -1.7 -8.9 3-isopropylmalate dehydratase large subunit compare
PFLU_RS04715 -1.7 -4.5 D-alanine--D-alanine ligase compare
PFLU_RS05890 -1.7 -1.5 recombination regulator RecX compare
PFLU_RS05585 -1.7 -6.0 MtnX-like HAD-IB family phosphatase compare
PFLU_RS09500 -1.7 -1.2 hypothetical protein compare
PFLU_RS30165 -1.7 -7.9 ParA family protein compare
PFLU_RS28325 -1.7 -7.3 energy transducer TonB compare
PFLU_RS04650 -1.7 -11.6 ABC transporter substrate-binding protein compare
PFLU_RS25585 -1.6 -1.9 exodeoxyribonuclease V subunit alpha compare
PFLU_RS23920 -1.6 -2.3 septation protein A compare
PFLU_RS08410 -1.6 -6.2 HTH-type transcriptional regulator CysB compare
PFLU_RS20015 -1.6 -2.3 transporter compare
PFLU_RS29090 -1.6 -7.7 exopolyphosphatase compare
PFLU_RS21060 -1.6 -3.3 TetR/AcrR family transcriptional regulator compare
PFLU_RS18665 -1.6 -3.6 NADH-quinone oxidoreductase subunit L compare
PFLU_RS19165 -1.6 -5.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS02590 -1.6 -7.7 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS25645 -1.6 -1.7 acetolactate synthase small subunit compare
PFLU_RS18670 -1.5 -2.4 NADH-quinone oxidoreductase subunit M compare
PFLU_RS14820 -1.5 -3.3 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS04220 -1.5 -6.4 FadR family transcriptional regulator compare
PFLU_RS20565 -1.5 -8.9 3-isopropylmalate dehydrogenase compare
PFLU_RS24335 -1.5 -9.3 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS01960 -1.5 -1.8 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS07665 -1.5 -1.4 type I DNA topoisomerase compare
PFLU_RS24790 -1.5 -4.3 tetratricopeptide repeat protein compare
PFLU_RS01485 -1.4 -9.1 cellulase compare
PFLU_RS06855 -1.4 -2.6 helix-turn-helix transcriptional regulator compare
PFLU_RS18625 -1.4 -6.2 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS30345 -1.4 -1.8 DUF2559 family protein compare
PFLU_RS23680 -1.4 -10.2 long-chain fatty acid--CoA ligase compare
PFLU_RS18735 -1.4 -0.9 hypothetical protein compare
PFLU_RS24765 -1.4 -10.6 2-isopropylmalate synthase compare
PFLU_RS18395 -1.4 -1.7 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS20660 -1.4 -6.7 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS07810 -1.4 -8.7 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS28690 -1.4 -8.5 FAD-binding oxidoreductase compare
PFLU_RS20520 -1.4 -7.0 colicin V production protein CvpA compare
PFLU_RS20625 -1.4 -2.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS08165 -1.4 -1.4 acyl carrier protein compare
PFLU_RS12970 -1.4 -3.0 MerR family transcriptional regulator compare
PFLU_RS29195 -1.3 -5.8 heme biosynthesis protein HemY compare
PFLU_RS14300 -1.3 -1.9 response regulator transcription factor compare
PFLU_RS20575 -1.3 -3.5 3-isopropylmalate dehydratase small subunit compare
PFLU_RS13020 -1.3 -4.0 cobalamin biosynthesis protein compare
PFLU_RS04465 -1.3 -5.1 ATP phosphoribosyltransferase compare
PFLU_RS11525 -1.3 -3.8 GntR family transcriptional regulator compare
PFLU_RS01690 -1.3 -5.3 nitrogen regulation protein NR(II) compare
PFLU_RS23220 -1.3 -2.4 tRNA-Arg compare
PFLU_RS27380 -1.3 -7.0 anthranilate synthase component I compare
PFLU_RS26020 -1.3 -7.3 TetR/AcrR family transcriptional regulator compare
PFLU_RS01620 -1.3 -5.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS14825 -1.3 -8.9 bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA compare
PFLU_RS19610 -1.3 -3.5 hypothetical protein compare
PFLU_RS29390 -1.3 -4.7 YkgJ family cysteine cluster protein compare
PFLU_RS13950 -1.3 -1.7 hypothetical protein compare
PFLU_RS10340 -1.2 -1.8 hypothetical protein compare
PFLU_RS31805 -1.2 -1.1 hypothetical protein compare
PFLU_RS08370 -1.2 -3.2 hypothetical protein compare
PFLU_RS13485 -1.2 -8.5 1,4-alpha-glucan branching protein GlgB compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in nitrogen source experiments

For nitrogen source D-Glucose across organisms