Experiment set3IT091 for Methanococcus maripaludis S2

Compare to:

Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Vitamin FREE

200 most important genes:

  gene name fitness t score description  
MMP_RS01005 -5.1 -3.3 riboflavin synthase compare
MMP_RS03315 -4.9 -3.0 ferrous iron transport protein A compare
MMP_RS01020 -4.5 -2.5 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS01175 -4.3 -8.3 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS06345 -3.7 -18.4 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMP_RS06680 -3.7 -23.0 Coenzyme F420 hydrogenase/dehydrogenase beta subunit C-terminal domain compare
MMP_RS06685 -3.6 -19.7 formate dehydrogenase H subunit alpha selenocysteine-containing compare
MMP_RS06715 -3.5 -24.7 cache domain-containing protein compare
MMP_RS06700 -3.3 -22.0 hypothetical protein compare
MMP_RS05515 -3.2 -11.7 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS06720 -3.2 -18.6 response regulator transcription factor compare
MMP_RS07635 -3.1 -10.8 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS06705 -3.0 -10.7 formate/nitrite transporter family protein compare
MMP_RS06355 -3.0 -5.6 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS07845 -3.0 -7.1 LL-diaminopimelate aminotransferase compare
MMP_RS02010 -2.9 -15.5 PHP domain-containing protein compare
MMP_RS08645 -2.9 -17.2 UPF0179 family protein compare
MMP_RS06350 -2.8 -12.1 HesA/MoeB/ThiF family protein compare
MMP_RS06975 -2.7 -4.6 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMP_RS03015 -2.7 -11.3 GTP 3' 8-cyclase MoaA compare
MMP_RS01985 -2.7 -16.2 F420-dependent methylenetetrahydromethanopterin dehydrogenase compare
MMP_RS01755 -2.7 -3.4 DUF2097 domain-containing protein compare
MMP_RS06730 -2.7 -4.1 phosphopantothenate/pantothenate synthetase compare
MMP_RS07605 -2.5 -9.0 diadenylate cyclase compare
MMP_RS07765 -2.4 -10.5 sodium:alanine symporter family protein compare
MMP_RS04775 -2.4 -6.3 adenosylhomocysteinase compare
MMP_RS04585 -2.4 -13.1 AIR synthase related protein compare
MMP_RS06625 -2.3 -5.5 DNA primase compare
MMP_RS01980 -2.3 -17.9 trimeric intracellular cation channel family protein compare
MMP_RS07445 -2.2 -7.7 helix-turn-helix domain-containing protein compare
MMP_RS08820 -2.2 -12.5 hypothetical protein compare
MMP_RS06295 -2.2 -7.6 methanogenesis marker 14 protein compare
MMP_RS03475 -2.1 -1.5 hypothetical protein compare
MMP_RS08790 -2.1 -3.6 translation initiation factor IF-2 subunit alpha compare
MMP_RS03025 -2.0 -8.8 molybdenum cofactor guanylyltransferase compare
MMP_RS00685 -2.0 -6.3 2-phospho-L-lactate guanylyltransferase compare
MMP_RS06120 -2.0 -4.9 UPF0147 family protein compare
MMP_RS03600 -2.0 -4.8 triose-phosphate isomerase compare
MMP_RS00040 -2.0 -8.0 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMP_RS04710 -1.9 -3.3 hypothetical protein compare
MMP_RS01325 -1.9 -4.5 dihydroneopterin aldolase family protein compare
MMP_RS08745 -1.9 -9.4 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS01220 -1.9 -10.7 hypothetical protein compare
MMP_RS06630 -1.9 -2.8 UPF0058 family protein compare
MMP_RS01225 -1.8 -8.7 DUF5379 domain-containing protein compare
MMP_RS04890 -1.8 -1.9 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS05430 -1.8 -4.8 TIGR00288 family NYN domain-containing protein compare
MMP_RS02195 -1.8 -4.1 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS02340 -1.8 -4.3 DNA-directed RNA polymerase subunit E'' compare
MMP_RS00110 -1.8 -6.4 hypothetical protein compare
MMP_RS07755 -1.8 -2.6 DUF555 domain-containing protein compare
MMP_RS03960 -1.8 -2.2 hypothetical protein compare
MMP_RS00060 -1.7 -2.9 3-dehydroquinate synthase II compare
MMP_RS07380 -1.7 -4.2 transcription elongation factor Spt5 compare
MMP_RS00305 -1.7 -2.5 phosphoribosyl-ATP diphosphatase compare
MMP_RS03435 -1.7 -2.9 ketol-acid reductoisomerase compare
MMP_RS00895 -1.7 -5.6 hypothetical protein compare
MMP_RS08210 -1.7 -3.9 phosphatidylglycerophosphatase A compare
MMP_RS01265 -1.7 -3.5 hypothetical protein compare
MMP_RS01545 -1.7 -2.5 CBS domain-containing protein compare
MMP_RS02165 -1.7 -9.7 tRNA-dihydrouridine synthase compare
MMP_RS01500 -1.6 -2.7 CBS domain-containing protein compare
MMP_RS00695 -1.6 -2.0 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS07005 -1.6 -1.5 4Fe-4S binding protein compare
MMP_RS02135 -1.6 -5.5 DUF5612 domain-containing protein compare
MMP_RS08720 -1.6 -1.6 4Fe-4S binding protein compare
MMP_RS01610 -1.6 -7.1 hypothetical protein compare
MMP_RS06340 -1.6 -7.5 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS08095 -1.6 -10.3 dethiobiotin synthase compare
MMP_RS08105 -1.5 -9.2 6-carboxyhexanoate--CoA ligase compare
MMP_RS05920 -1.5 -1.4 50S ribosomal protein L37e compare
MMP_RS08320 -1.5 -10.0 molybdopterin molybdotransferase MoeA compare
MMP_RS06475 -1.5 -5.3 FAD-dependent oxidoreductase compare
MMP_RS04780 -1.5 -4.4 ribonuclease P compare
MMP_RS06370 -1.5 -5.3 biotin synthase BioB compare
MMP_RS01800 -1.5 -5.9 TIGR00303 family protein compare
MMP_RS03400 -1.5 -5.1 archease compare
MMP_RS04605 -1.5 -4.4 cobalt ECF transporter T component CbiQ compare
MMP_RS06930 -1.5 -11.4 MBL fold metallo-hydrolase compare
MMP_RS00300 -1.5 -1.6 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS03640 -1.5 -5.5 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS02355 -1.5 -5.7 30S ribosomal protein S27ae compare
MMP_RS04500 -1.5 -12.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS05510 -1.5 -6.4 Rrf2 family transcriptional regulator compare
MMP_RS08635 -1.5 -3.1 UbiA family prenyltransferase compare
MMP_RS05815 -1.4 -6.6 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS08435 -1.4 -3.6 Era-like GTP-binding protein compare
MMP_RS02345 -1.4 -4.0 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS05540 -1.4 -3.6 hypothetical protein compare
MMP_RS05555 -1.3 -1.9 DUF4040 domain-containing protein compare
MMP_RS06285 -1.3 -3.2 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS06270 -1.3 -5.6 TIGR00300 family protein compare
MMP_RS08100 -1.3 -6.2 8-amino-7-oxononanoate synthase compare
MMP_RS08300 -1.3 -1.7 metal-sulfur cluster assembly factor compare
MMP_RS01830 -1.3 -3.2 tRNA-Val compare
MMP_RS00295 -1.3 -4.0 gamma carbonic anhydrase family protein compare
MMP_RS03305 -1.3 -8.3 winged helix-turn-helix domain-containing protein compare
MMP_RS06230 -1.2 -3.3 helix-turn-helix domain-containing protein compare
MMP_RS08715 -1.2 -2.9 formylmethanofuran dehydrogenase subunit B compare
MMP_RS07525 -1.2 -6.8 4Fe-4S binding protein compare
MMP_RS04955 -1.2 -3.8 DNA topoisomerase I compare
MMP_RS04615 -1.2 -3.9 PDGLE domain-containing protein compare
MMP_RS07645 -1.2 -6.2 aldehyde dehydrogenase family protein compare
MMP_RS03445 -1.2 -1.9 methanogenesis marker 17 protein compare
MMP_RS06865 -1.2 -2.1 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS06020 -1.1 -3.8 archaeoflavoprotein AfpA compare
MMP_RS06200 -1.1 -8.5 M24 family metallopeptidase compare
MMP_RS02280 -1.1 -1.3 DUF211 domain-containing protein compare
MMP_RS03035 -1.1 -3.4 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS06885 -1.1 -3.4 50S ribosome-binding GTPase compare
MMP_RS02875 -1.1 -8.7 chorismate pyruvate-lyase family protein compare
MMP_RS02190 -1.1 -3.8 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS02800 -1.1 -4.5 nucleotidyltransferase domain-containing protein compare
MMP_RS01380 -1.1 -3.9 PHP domain-containing protein compare
MMP_RS06925 -1.1 -1.9 ribonuclease VapC4 compare
MMP_RS00720 -1.0 -6.8 metal-dependent hydrolase compare
MMP_RS01725 -1.0 -2.7 class I SAM-dependent methyltransferase family protein compare
MMP_RS00115 -1.0 -8.3 radical SAM protein compare
MMP_RS03095 -1.0 -6.2 diphthine synthase compare
MMP_RS07425 -1.0 -7.1 GTP-binding protein compare
MMP_RS02240 -1.0 -2.8 methanogenesis marker 7 protein compare
MMP_RS09020 -1.0 -2.3 hypothetical protein compare
MMP_RS02885 -1.0 -8.0 molybdopterin biosynthesis protein compare
MMP_RS01385 -1.0 -1.0 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS07685 -1.0 -4.8 TIGR01212 family radical SAM protein compare
MMP_RS06895 -1.0 -1.7 selenocysteine-specific translation elongation factor compare
MMP_RS00515 -1.0 -1.8 DUF655 domain-containing protein compare
MMP_RS07775 -1.0 -5.5 alanine dehydrogenase compare
MMP_RS07630 -0.9 -1.7 ATP-binding cassette domain-containing protein compare
MMP_RS00985 -0.9 -3.7 CDC48 family AAA ATPase compare
MMP_RS05060 -0.9 -6.9 AAA family ATPase compare
MMP_RS02900 -0.9 -0.9 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS00320 -0.9 -2.0 class I SAM-dependent methyltransferase compare
MMP_RS02985 -0.9 -4.2 hypothetical protein compare
MMP_RS08460 -0.9 -1.6 proteasome-activating nucleotidase compare
MMP_RS07790 -0.9 -7.0 segregation/condensation protein A compare
MMP_RS04685 -0.9 -3.3 DUF126 domain-containing protein compare
MMP_RS03250 -0.9 -3.3 MJ1244 family protein compare
MMP_RS04870 -0.9 -4.5 TIGR02253 family HAD-type hydrolase compare
MMP_RS07600 -0.9 -3.0 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS00130 -0.9 -1.6 nickel-responsive transcriptional regulator NikR compare
MMP_RS05070 -0.9 -5.9 4Fe-4S dicluster domain-containing protein compare
MMP_RS00035 -0.9 -5.9 DUF2098 family protein compare
MMP_RS06315 -0.9 -1.5 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS05345 -0.8 -4.7 hypothetical protein compare
MMP_RS00290 -0.8 -5.6 hypothetical protein compare
MMP_RS05055 -0.8 -6.8 DUF166 domain-containing protein compare
MMP_RS07200 -0.8 -4.5 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS00850 -0.8 -5.3 TIGR01177 family methyltransferase compare
MMP_RS04620 -0.8 -4.8 cobalt transporter CbiM compare
MMP_RS05545 -0.8 -5.0 pyridoxal phosphate-dependent aminotransferase compare
MMP_RS05095 -0.8 -5.6 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMP_RS05765 -0.8 -5.9 M42 family metallopeptidase compare
MMP_RS05080 -0.8 -6.1 acetyl-CoA decarbonylase/synthase complex subunit delta compare
MMP_RS07390 -0.8 -3.0 cell division protein FtsZ compare
MMP_RS05845 -0.8 -2.0 tRNA-intron lyase compare
MMP_RS07710 -0.8 -5.0 cell division protein FtsZ compare
MMP_RS07580 -0.8 -2.2 DUF356 domain-containing protein compare
MMP_RS02170 -0.7 -4.6 CBS domain-containing protein compare
MMP_RS01445 -0.7 -5.0 hypothetical protein compare
MMP_RS05090 -0.7 -4.6 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMP_RS08690 -0.7 -4.8 RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 compare
MMP_RS06105 -0.7 -3.9 hydrogenase maturation peptidase HycI compare
MMP_RS02130 -0.7 -2.9 zinc metalloprotease HtpX compare
MMP_RS06980 -0.7 -4.4 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS01840 -0.7 -4.0 TIGR00289 family protein compare
MMP_RS07420 -0.7 -3.1 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS01600 -0.7 -1.7 50S ribosomal protein L15e compare
MMP_RS00520 -0.7 -1.4 RNA polymerase Rpb4 family protein compare
MMP_RS03555 -0.7 -4.8 transcriptional regulator compare
MMP_RS05075 -0.7 -5.6 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMP_RS07750 -0.7 -3.9 DUF357 domain-containing protein compare
MMP_RS06725 -0.7 -5.0 hypothetical protein compare
MMP_RS06215 -0.7 -1.9 30S ribosomal protein S6e compare
MMP_RS05100 -0.6 -5.7 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMP_RS07735 -0.6 -0.8 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS08915 -0.6 -1.6 2 5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase compare
MMP_RS08330 -0.6 -3.8 NADH-quinone oxidoreductase subunit H compare
MMP_RS08445 -0.6 -2.5 DUF2099 family protein compare
MMP_RS05505 -0.6 -3.5 class IV adenylate cyclase compare
MMP_RS07180 -0.6 -4.3 DEAD/DEAH box helicase compare
MMP_RS01795 -0.6 -1.3 methanogenesis marker 6 protein compare
MMP_RS05425 -0.6 -2.7 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS07195 -0.6 -5.1 M20 family metallo-hydrolase compare
MMP_RS00050 -0.6 -3.8 AarF/UbiB family protein compare
MMP_RS01045 -0.6 -4.2 diphthamide biosynthesis enzyme Dph2 compare
MMP_RS07555 -0.6 -0.7 monovalent cation/H+ antiporter subunit E compare
MMP_RS03155 -0.6 -3.9 precorrin-6A reductase compare
MMP_RS03590 -0.6 -4.3 METTL5 family protein compare
MMP_RS05065 -0.6 -2.4 CooT family nickel-binding protein compare
MMP_RS05085 -0.6 -4.6 AAA family ATPase compare
MMP_RS05925 -0.6 -2.7 small nuclear ribonucleoprotein compare
MMP_RS06400 -0.6 -1.2 4Fe-4S binding protein compare
MMP_RS03580 -0.6 -2.2 signal recognition particle-docking protein FtsY compare
MMP_RS06840 -0.6 -0.8 DNA-directed RNA polymerase subunit N compare
MMP_RS05850 -0.6 -2.1 Ldh family oxidoreductase compare
MMP_RS01365 -0.6 -2.1 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS08785 -0.5 -1.2 RNA-protein complex protein Nop10 compare
MMP_RS05440 -0.5 -3.6 winged helix-turn-helix transcriptional regulator compare
MMP_RS01495 -0.5 -4.2 TraB/GumN family protein compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms