Experiment set3IT091 for Dyella japonica UNC79MFTsu3.2

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Casamino Acids nitrogen source

200 most important genes:

  gene name fitness t score description  
ABZR86_RS08340 -6.3 -7.5 adenylosuccinate synthase compare
ABZR86_RS12070 -6.2 -6.0 anthranilate phosphoribosyltransferase compare
ABZR86_RS15460 -5.8 -4.0 type I glutamate--ammonia ligase compare
ABZR86_RS08000 -5.7 -20.5 tryptophan synthase subunit beta compare
ABZR86_RS08010 -5.7 -8.6 phosphoribosylanthranilate isomerase compare
ABZR86_RS02815 -4.9 -17.3 asparagine synthase B compare
ABZR86_RS12005 -4.8 -3.3 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS12885 -4.6 -3.2 magnesium-translocating P-type ATPase compare
ABZR86_RS12065 -4.6 -7.1 indole-3-glycerol phosphate synthase TrpC compare
ABZR86_RS12215 -4.5 -5.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABZR86_RS09885 -4.4 -3.0 trypsin-like peptidase domain-containing protein compare
ABZR86_RS02230 -4.2 -4.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR86_RS10715 -4.1 -12.8 serine hydroxymethyltransferase compare
ABZR86_RS15640 -4.1 -2.8 orotate phosphoribosyltransferase compare
ABZR86_RS18655 -4.1 -9.9 transketolase compare
ABZR86_RS14100 -4.0 -10.6 DNA adenine methylase compare
ABZR86_RS10475 -3.7 -5.4 shikimate kinase compare
ABZR86_RS07995 -3.6 -9.7 tryptophan synthase subunit alpha compare
ABZR86_RS12200 -3.5 -7.3 ribulose-phosphate 3-epimerase compare
ABZR86_RS12180 -3.3 -16.5 anthranilate synthase component I compare
ABZR86_RS11825 -3.3 -3.3 citrate synthase compare
ABZR86_RS21575 -3.2 -8.5 [protein-PII] uridylyltransferase compare
ABZR86_RS10480 -3.1 -2.4 3-dehydroquinate synthase compare
ABZR86_RS19235 -3.0 -4.6 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS19865 -3.0 -5.4 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS19860 -3.0 -10.8 phosphoribosylglycinamide formyltransferase compare
ABZR86_RS06270 -3.0 -6.7 glycosyltransferase family 9 protein compare
ABZR86_RS06775 -3.0 -14.8 amidophosphoribosyltransferase compare
ABZR86_RS08040 -2.9 -7.6 chorismate synthase compare
ABZR86_RS21335 -2.9 -1.8 response regulator transcription factor compare
ABZR86_RS06275 -2.9 -3.1 DUF6165 family protein compare
ABZR86_RS13850 -2.7 -6.2 phosphoribosylamine--glycine ligase compare
ABZR86_RS14700 -2.6 -6.5 glucose-6-phosphate dehydrogenase compare
ABZR86_RS17180 -2.6 -10.0 glycosyltransferase compare
ABZR86_RS09075 -2.6 -1.9 NrsF family protein compare
ABZR86_RS10830 -2.6 -3.9 Holliday junction branch migration DNA helicase RuvB compare
ABZR86_RS12280 -2.5 -3.0 dihydrolipoyl dehydrogenase compare
ABZR86_RS12410 -2.5 -4.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABZR86_RS07180 -2.5 -5.3 RNA polymerase sigma factor RpoE compare
ABZR86_RS14985 -2.5 -8.3 shikimate dehydrogenase compare
ABZR86_RS17085 -2.4 -7.2 type II 3-dehydroquinate dehydratase compare
ABZR86_RS09845 -2.3 -11.4 DUF1631 domain-containing protein compare
ABZR86_RS15515 -2.2 -4.3 nitrogen regulation protein NR(I) compare
ABZR86_RS20775 -2.2 -5.4 TetR/AcrR family transcriptional regulator compare
ABZR86_RS18715 -2.2 -7.3 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABZR86_RS13920 -2.2 -12.5 CDP-glycerol glycerophosphotransferase family protein compare
ABZR86_RS08250 -2.0 -3.4 phosphate signaling complex protein PhoU compare
ABZR86_RS05820 -1.9 -5.2 GntR family transcriptional regulator compare
ABZR86_RS09635 -1.9 -3.3 phosphoglycerate dehydrogenase compare
ABZR86_RS14690 -1.9 -6.6 phosphogluconate dehydratase compare
ABZR86_RS07175 -1.8 -4.3 sigma-E factor negative regulatory protein compare
ABZR86_RS12045 -1.8 -11.9 cAMP-activated global transcriptional regulator CRP compare
ABZR86_RS08710 -1.8 -8.5 N-acetylcitrulline deacetylase (EC 3.5.1.-) (from data) compare
ABZR86_RS06590 -1.8 -2.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR86_RS08705 -1.7 -6.3 N-acetylglutamate synthase; N-acetylglutamate kinase (EC 2.3.1.1; EC 2.7.2.8) (from data) compare
ABZR86_RS08730 -1.7 -10.7 N-acetylornithine carbamoyltransferase compare
ABZR86_RS08715 -1.7 -11.5 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
ABZR86_RS00685 -1.6 -2.3 carbon storage regulator CsrA compare
ABZR86_RS09265 -1.5 -8.9 hypothetical protein compare
ABZR86_RS07310 -1.5 -5.7 tRNA-Val compare
ABZR86_RS05700 -1.5 -3.1 SsrA-binding protein SmpB compare
ABZR86_RS08695 -1.5 -7.7 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
ABZR86_RS06580 -1.5 -3.3 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS06260 -1.4 -4.5 MBL fold metallo-hydrolase compare
ABZR86_RS00310 -1.4 -3.0 AraC family transcriptional regulator compare
ABZR86_RS08700 -1.4 -4.1 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
ABZR86_RS12605 -1.3 -3.1 thioredoxin TrxA compare
ABZR86_RS02450 -1.3 -2.0 hypothetical protein compare
ABZR86_RS07660 -1.3 -3.9 exodeoxyribonuclease V subunit gamma compare
ABZR86_RS05550 -1.3 -2.9 lipopolysaccharide assembly protein LapB compare
ABZR86_RS15315 -1.3 -8.8 phenylalanine 4-monooxygenase compare
ABZR86_RS18450 -1.3 -3.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
ABZR86_RS12790 -1.3 -4.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
ABZR86_RS16045 -1.3 -5.7 N-acetylglucosamine-6-phosphate deacetylase compare
ABZR86_RS15020 -1.3 -1.5 DUF484 family protein compare
ABZR86_RS08480 -1.2 -5.2 methylisocitrate lyase compare
ABZR86_RS18355 -1.2 -1.6 PepSY domain-containing protein compare
ABZR86_RS19815 -1.2 -8.7 RNA polymerase factor sigma-54 compare
ABZR86_RS18705 -1.2 -1.5 pyridoxal-phosphate dependent enzyme compare
ABZR86_RS05910 -1.2 -4.8 cupin domain-containing protein compare
ABZR86_RS07235 -1.2 -1.1 tRNA-Asp compare
ABZR86_RS02810 -1.2 -2.1 hypothetical protein compare
ABZR86_RS06715 -1.1 -6.6 imidazole glycerol phosphate synthase subunit HisH compare
ABZR86_RS15025 -1.1 -3.3 tyrosine recombinase XerC compare
ABZR86_RS06720 -1.1 -3.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABZR86_RS08015 -1.1 -1.4 tRNA pseudouridine(38-40) synthase TruA compare
ABZR86_RS06630 -1.1 -2.9 phosphopyruvate hydratase compare
ABZR86_RS18985 -1.1 -6.2 protein-glutamate O-methyltransferase CheR compare
ABZR86_RS08135 -1.1 -1.5 hypothetical protein compare
ABZR86_RS12780 -1.1 -3.9 pteridine reductase compare
ABZR86_RS07340 -1.1 -2.5 tRNA-Leu compare
ABZR86_RS05995 -1.0 -8.3 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
ABZR86_RS09660 -1.0 -2.4 MerR family transcriptional regulator compare
ABZR86_RS10710 -1.0 -1.8 transcriptional regulator NrdR compare
ABZR86_RS10215 -1.0 -4.8 inositol monophosphatase family protein compare
ABZR86_RS02305 -1.0 -1.9 hypothetical protein compare
ABZR86_RS02435 -1.0 -1.3 YdaS family helix-turn-helix protein compare
ABZR86_RS11485 -1.0 -4.2 hypothetical protein compare
ABZR86_RS05860 -1.0 -3.0 adenylosuccinate lyase compare
ABZR86_RS20820 -1.0 -1.2 CsbD family protein compare
ABZR86_RS05570 -1.0 -3.7 (d)CMP kinase compare
ABZR86_RS18815 -0.9 -3.7 FAD-binding protein compare
ABZR86_RS06785 -0.9 -3.2 SPOR domain-containing protein compare
ABZR86_RS06735 -0.9 -3.9 ATP phosphoribosyltransferase compare
ABZR86_RS03035 -0.9 -1.2 CBS domain-containing protein compare
ABZR86_RS22135 -0.9 -3.8 hypothetical protein compare
ABZR86_RS06000 -0.9 -4.4 poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABZR86_RS13915 -0.9 -6.3 glycosyltransferase family 2 protein compare
ABZR86_RS18545 -0.9 -5.6 hypothetical protein compare
ABZR86_RS09145 -0.9 -2.9 hypothetical protein compare
ABZR86_RS10310 -0.9 -1.5 hypothetical protein compare
ABZR86_RS06710 -0.9 -5.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABZR86_RS02220 -0.9 -7.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR86_RS19225 -0.9 -2.4 site-specific tyrosine recombinase XerD compare
ABZR86_RS09535 -0.9 -1.2 preprotein translocase subunit YajC compare
ABZR86_RS16745 -0.9 -1.9 hypothetical protein compare
ABZR86_RS08355 -0.9 -2.9 FtsH protease activity modulator HflK compare
ABZR86_RS18490 -0.9 -3.1 low molecular weight protein-tyrosine-phosphatase compare
ABZR86_RS13055 -0.9 -5.1 glucokinase compare
ABZR86_RS18585 -0.9 -5.1 polysaccharide biosynthesis/export family protein compare
ABZR86_RS19135 -0.9 -1.0 hypothetical protein compare
ABZR86_RS18830 -0.9 -3.9 electron transfer flavoprotein-ubiquinone oxidoreductase compare
ABZR86_RS08350 -0.9 -3.0 protease modulator HflC compare
ABZR86_RS02310 -0.8 -1.8 hypothetical protein compare
ABZR86_RS08890 -0.8 -0.9 hypothetical protein compare
ABZR86_RS08435 -0.8 -2.7 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR86_RS00805 -0.8 -3.7 polynucleotide adenylyltransferase PcnB compare
ABZR86_RS11655 -0.8 -3.7 SLC13 family permease compare
ABZR86_RS03430 -0.8 -1.6 putative quinol monooxygenase compare
ABZR86_RS17560 -0.8 -5.1 NrdJb compare
ABZR86_RS06705 -0.8 -3.6 imidazole glycerol phosphate synthase subunit HisF compare
ABZR86_RS10870 -0.8 -1.4 FmdB family zinc ribbon protein compare
ABZR86_RS00660 -0.8 -3.0 recombinase RecA compare
ABZR86_RS13515 -0.8 -2.5 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
ABZR86_RS18775 -0.8 -1.7 nucleotidyltransferase family protein compare
ABZR86_RS10530 -0.8 -1.0 H-NS histone family protein compare
ABZR86_RS13100 -0.8 -3.4 GspH/FimT family pseudopilin compare
ABZR86_RS18675 -0.8 -3.3 phosphoglycerate kinase compare
ABZR86_RS14800 -0.8 -4.8 MASE1 domain-containing protein compare
ABZR86_RS04495 -0.7 -0.9 hypothetical protein compare
ABZR86_RS13065 -0.7 -6.1 type II secretion system secretin GspD compare
ABZR86_RS15510 -0.7 -1.5 ATP-binding protein compare
ABZR86_RS02545 -0.7 -2.3 Ref family recombination enhancement nuclease compare
ABZR86_RS01565 -0.7 -1.4 hypothetical protein compare
ABZR86_RS19025 -0.7 -2.1 homoserine O-succinyltransferase compare
ABZR86_RS15975 -0.7 -4.4 threonine synthase (EC 4.2.3.1) (from data) compare
ABZR86_RS06730 -0.7 -4.0 histidinol dehydrogenase compare
ABZR86_RS17550 -0.7 -6.1 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase compare
ABZR86_RS02185 -0.7 -3.7 tRNA 2-thiouridine(34) synthase MnmA compare
ABZR86_RS13935 -0.7 -2.4 lipid A biosynthesis acyltransferase compare
ABZR86_RS03975 -0.7 -1.5 class I SAM-dependent methyltransferase compare
ABZR86_RS08430 -0.7 -1.5 2-methylaconitate cis-trans isomerase PrpF compare
ABZR86_RS00120 -0.7 -1.8 cysteine hydrolase family protein compare
ABZR86_RS12435 -0.7 -4.9 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS21255 -0.7 -3.6 DUF2007 domain-containing protein compare
ABZR86_RS08775 -0.7 -2.1 HAD-IA family hydrolase compare
ABZR86_RS06725 -0.7 -3.6 histidinol-phosphate transaminase compare
ABZR86_RS05635 -0.7 -4.8 sodium:calcium antiporter compare
ABZR86_RS12945 -0.7 -1.1 AraC family transcriptional regulator compare
ABZR86_RS17765 -0.7 -2.8 type 1 glutamine amidotransferase domain-containing protein compare
ABZR86_RS16285 -0.6 -5.0 cell division protein ZapE compare
ABZR86_RS13105 -0.6 -4.2 type II secretion system major pseudopilin GspG compare
ABZR86_RS02340 -0.6 -2.0 hypothetical protein compare
ABZR86_RS01730 -0.6 -1.1 DUF3820 family protein compare
ABZR86_RS08905 -0.6 -3.5 carbonate dehydratase compare
ABZR86_RS15740 -0.6 -5.7 DUF1481 domain-containing protein compare
ABZR86_RS02900 -0.6 -4.1 MASE1 domain-containing protein compare
ABZR86_RS21355 -0.6 -2.3 septum site-determining protein MinD compare
ABZR86_RS06740 -0.6 -1.5 YerC/YecD family TrpR-related protein compare
ABZR86_RS14795 -0.6 -2.0 hypothetical protein compare
ABZR86_RS10315 -0.6 -2.7 Imm42 family immunity protein compare
ABZR86_RS02225 -0.6 -2.6 prephenate dehydratase compare
ABZR86_RS13110 -0.6 -2.4 type II secretion system inner membrane protein GspF compare
ABZR86_RS16760 -0.6 -1.0 phage tail terminator-like protein compare
ABZR86_RS13090 -0.6 -3.9 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR86_RS01755 -0.6 -2.4 helix-turn-helix domain-containing protein compare
ABZR86_RS11460 -0.6 -1.7 hypothetical protein compare
ABZR86_RS14610 -0.6 -0.8 conjugal transfer protein TrbN compare
ABZR86_RS00570 -0.6 -2.1 acetoacetyl-CoA reductase compare
ABZR86_RS20570 -0.6 -1.7 acetyl-CoA C-acyltransferase compare
ABZR86_RS11240 -0.6 -1.6 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABZR86_RS18600 -0.6 -5.3 YjbH domain-containing protein compare
ABZR86_RS05255 -0.6 -0.9 nuclear transport factor 2 family protein compare
ABZR86_RS02200 -0.6 -4.8 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR86_RS18190 -0.6 -2.3 response regulator transcription factor compare
ABZR86_RS13095 -0.6 -1.8 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR86_RS18495 -0.6 -3.8 polysaccharide biosynthesis tyrosine autokinase compare
ABZR86_RS06690 -0.6 -1.6 acireductone synthase compare
ABZR86_RS19520 -0.6 -1.7 (2Fe-2S)-binding protein compare
ABZR86_RS10840 -0.6 -1.5 Holliday junction branch migration protein RuvA compare
ABZR86_RS13075 -0.6 -3.7 type II secretion system protein GspM compare
ABZR86_RS21020 -0.6 -3.5 ATP-binding protein compare
ABZR86_RS17965 -0.6 -1.0 hypothetical protein compare
ABZR86_RS18360 -0.6 -4.1 response regulator transcription factor compare
ABZR86_RS13085 -0.6 -4.5 type II secretion system protein GspK compare
ABZR86_RS21435 -0.6 -2.5 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABZR86_RS18050 -0.6 -1.3 Hpt domain-containing protein compare
ABZR86_RS19800 -0.6 -3.2 RNase adapter RapZ compare
ABZR86_RS02180 -0.5 -2.0 high frequency lysogenization protein HflD compare
ABZR86_RS19060 -0.5 -3.1 L-serine ammonia-lyase compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source casamino acids in Dyella japonica UNC79MFTsu3.2

For nitrogen source casamino acids across organisms