Experiment set3IT090 for Pseudomonas fluorescens FW300-N2E2

Compare to:

outer cut, LB soft agar motility assay

Genes with specific phenotypes:

  gene name fitness t score description  
Pf6N2E2_2585 -6.0 -9.2 Flagellar hook-length control protein FliK conserved
Pf6N2E2_5689 -5.0 -5.1 Flagellar biosynthesis protein FlgN compare
Pf6N2E2_2710 -5.0 -5.5 FIG00953701: hypothetical protein compare
Pf6N2E2_2575 -4.8 -10.3 Flagellar biosynthesis protein FlhF compare
Pf6N2E2_2602 -4.7 -10.7 Flagellin protein FlaA compare
Pf6N2E2_2569 -4.3 -11.0 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) conserved
Pf6N2E2_2622 -4.3 -11.4 Flagellar hook-associated protein FlgL conserved
Pf6N2E2_2564 -4.3 -5.1 Positive regulator of CheA protein activity (CheW) conserved
Pf6N2E2_2600 -4.3 -13.4 Flagellar hook-associated protein FliD conserved
Pf6N2E2_2599 -4.1 -7.7 Flagellar biosynthesis protein FliS conserved
Pf6N2E2_2563 -4.0 -13.1 FIG00953562: hypothetical protein compare
Pf6N2E2_2573 -3.9 -6.3 RNA polymerase sigma factor for flagellar operon conserved
Pf6N2E2_2623 -3.8 -9.4 Flagellar hook-associated protein FlgK conserved
Pf6N2E2_2570 -3.7 -7.2 Signal transduction histidine kinase CheA (EC 2.7.3.-) conserved
Pf6N2E2_2567 -3.4 -5.6 Flagellar motor rotation protein MotB conserved
Pf6N2E2_2565 -3.3 -7.5 CheW domain protein conserved
Pf6N2E2_2568 -3.2 -5.3 Flagellar motor rotation protein MotA conserved
Pf6N2E2_69 -3.1 -5.6 Probable type IV pilus assembly FimV-related transmembrane protein conserved
Pf6N2E2_2303 -2.5 -6.2 Aerotaxis receptor Aer conserved
Pf6N2E2_5893 -2.4 -5.8 FIG00956448: hypothetical protein conserved
Pf6N2E2_2566 -2.4 -5.2 Chromosome (plasmid) partitioning protein ParA conserved
Pf6N2E2_5693 -2.4 -5.7 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) conserved
Pf6N2E2_5963 -2.2 -5.5 lipoprotein, putative conserved
Pf6N2E2_5390 -2.1 -6.5 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf6N2E2_5129 -1.8 -7.9 ClpB protein conserved
Pf6N2E2_583 -1.8 -6.7 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf6N2E2_582 -1.8 -6.9 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) compare
Pf6N2E2_5184 -1.7 -7.2 Chromosome segregation ATPases conserved
Pf6N2E2_3906 -1.6 -7.5 Transcription accessory protein (S1 RNA-binding domain) conserved
Pf6N2E2_4167 -1.6 -5.8 Zinc ABC transporter, ATP-binding protein ZnuC conserved
Pf6N2E2_2763 -1.4 -6.7 Predicted signal transduction protein conserved
Pf6N2E2_2596 -1.3 -5.3 Flagellar sensor histidine kinase FleS conserved
Pf6N2E2_584 -1.3 -6.3 ABC transporter, periplasmic substrate-binding protein conserved
Pf6N2E2_5278 +1.2 5.5 Signal transduction histidine kinase compare
Pf6N2E2_4926 +1.4 7.9 hypothetical protein compare
Pf6N2E2_4616 +1.5 5.4 type IV pilus biogenesis protein PilJ conserved
Pf6N2E2_816 +1.6 6.7 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf6N2E2_2329 +1.7 7.9 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) conserved
Pf6N2E2_818 +1.9 7.2 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_815 +2.1 11.7 Signal transduction histidine kinase compare
Pf6N2E2_2601 +2.1 5.4 Flagellin protein FlaG conserved
Pf6N2E2_3871 +2.2 14.1 FIG00553872: hypothetical protein compare
Pf6N2E2_5872 +2.5 8.5 Sensor histidine kinase/response regulator compare
Pf6N2E2_3508 +2.5 16.5 Probable two-component response regulator conserved
Pf6N2E2_5873 +2.5 7.7 FIG00953467: hypothetical protein compare
Pf6N2E2_3827 +2.8 5.3 FIG00955429: hypothetical protein conserved


Specific phenotypes for motility Agar across organisms