Experiment set3IT090 for Pseudomonas fluorescens FW300-N2E2

Compare to:

outer cut, LB soft agar motility assay

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2627 -7.2 -5.0 Flagellar basal-body rod protein FlgG compare
Pf6N2E2_2582 -6.6 -3.9 Flagellar motor switch protein FliN compare
Pf6N2E2_2593 -6.2 -6.1 Flagellar M-ring protein FliF compare
Pf6N2E2_5695 -6.2 -8.4 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_2585 -6.0 -9.2 Flagellar hook-length control protein FliK conserved
Pf6N2E2_2572 -5.8 -3.3 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_2579 -5.8 -5.6 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_4159 -5.6 -3.9 Cytochrome c4 compare
Pf6N2E2_5006 -5.6 -7.6 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2583 -5.5 -8.8 Flagellar motor switch protein FliM compare
Pf6N2E2_5338 -5.5 -5.3 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2317 -5.4 -5.3 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2590 -5.4 -12.1 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_2624 -5.4 -7.4 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
Pf6N2E2_4764 -5.4 -6.4 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_2318 -5.2 -9.4 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_5689 -5.0 -5.1 Flagellar biosynthesis protein FlgN compare
Pf6N2E2_2580 -5.0 -4.7 Flagellar biosynthesis protein FliP compare
Pf6N2E2_2710 -5.0 -5.5 FIG00953701: hypothetical protein compare
Pf6N2E2_2577 -5.0 -9.6 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_3791 -4.9 -9.4 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_2755 -4.9 -2.0 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_5694 -4.9 -6.9 Flagellar basal-body rod protein FlgB compare
Pf6N2E2_2646 -4.9 -2.5 FIG00953416: hypothetical protein compare
Pf6N2E2_2575 -4.8 -10.3 Flagellar biosynthesis protein FlhF compare
Pf6N2E2_5340 -4.8 -3.3 Stringent starvation protein A compare
Pf6N2E2_4451 -4.7 -7.3 FIG139438: lipoprotein B compare
Pf6N2E2_2602 -4.7 -10.7 Flagellin protein FlaA compare
Pf6N2E2_445 -4.7 -7.1 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_5337 -4.5 -6.2 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2591 -4.5 -6.8 Flagellar assembly protein FliH compare
Pf6N2E2_2320 -4.5 -3.9 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2189 -4.4 -6.0 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2578 -4.4 -2.5 Flagellar biosynthesis protein FliR compare
Pf6N2E2_2181 -4.3 -2.1 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_3792 -4.3 -6.6 Glucans biosynthesis protein G precursor compare
Pf6N2E2_2569 -4.3 -11.0 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) conserved
Pf6N2E2_2574 -4.3 -2.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_2622 -4.3 -11.4 Flagellar hook-associated protein FlgL conserved
Pf6N2E2_2564 -4.3 -5.1 Positive regulator of CheA protein activity (CheW) conserved
Pf6N2E2_4803 -4.3 -2.5 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2600 -4.3 -13.4 Flagellar hook-associated protein FliD conserved
Pf6N2E2_5527 -4.3 -2.8 Cold shock protein CspC compare
Pf6N2E2_2592 -4.3 -6.6 Flagellar motor switch protein FliG compare
Pf6N2E2_1147 -4.3 -3.2 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_4611 -4.3 -4.1 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2594 -4.2 -7.2 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_3617 -4.2 -6.5 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5339 -4.2 -8.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2825 -4.2 -2.9 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_2599 -4.1 -7.7 Flagellar biosynthesis protein FliS conserved
Pf6N2E2_5705 -4.1 -3.3 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_5430 -4.1 -10.6 Transglycosylase, Slt family compare
Pf6N2E2_4153 -4.1 -2.0 Sensory box histidine kinase compare
Pf6N2E2_2563 -4.0 -13.1 FIG00953562: hypothetical protein compare
Pf6N2E2_2754 -4.0 -4.6 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_2573 -3.9 -6.3 RNA polymerase sigma factor for flagellar operon conserved
Pf6N2E2_2753 -3.9 -3.8 HtrA protease/chaperone protein compare
Pf6N2E2_5697 -3.9 -14.3 Flagellar hook protein FlgE compare
Pf6N2E2_3656 -3.8 -7.7 Probable transcription regulator Mig-14 compare
Pf6N2E2_3611 -3.8 -1.9 HflC protein compare
Pf6N2E2_2623 -3.8 -9.4 Flagellar hook-associated protein FlgK conserved
Pf6N2E2_4369 -3.8 -2.6 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4204 -3.8 -2.2 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_4352 -3.8 -3.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5150 -3.7 -7.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_3655 -3.7 -11.3 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_2570 -3.7 -7.2 Signal transduction histidine kinase CheA (EC 2.7.3.-) conserved
Pf6N2E2_4584 -3.6 -3.2 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_2576 -3.6 -10.2 Flagellar biosynthesis protein FlhA compare
Pf6N2E2_5342 -3.6 -4.1 21 kDa hemolysin precursor compare
Pf6N2E2_2201 -3.6 -5.4 Transmembrane regulator protein PrtR compare
Pf6N2E2_5155 -3.6 -4.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_4372 -3.6 -6.0 FIG00460773: hypothetical protein compare
Pf6N2E2_2527 -3.5 -4.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_2824 -3.5 -10.4 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_5691 -3.5 -6.1 Flagellar basal-body P-ring formation protein FlgA compare
Pf6N2E2_2597 -3.5 -7.7 Flagellar regulatory protein FleQ compare
Pf6N2E2_5555 -3.5 -1.5 Cold shock protein CspA compare
Pf6N2E2_75 -3.5 -3.9 Colicin V production protein compare
Pf6N2E2_2508 -3.5 -4.5 hypothetical protein compare
Pf6N2E2_241 -3.5 -1.4 hypothetical protein compare
Pf6N2E2_2510 -3.5 -5.3 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2506 -3.5 -14.1 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_5156 -3.4 -2.4 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_4206 -3.4 -2.4 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_2823 -3.4 -5.6 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_4747 -3.4 -3.4 Transmembrane sensor compare
Pf6N2E2_3460 -3.4 -1.9 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_2567 -3.4 -5.6 Flagellar motor rotation protein MotB conserved
Pf6N2E2_5291 -3.4 -17.2 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_2311 -3.4 -8.2 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_3661 -3.3 -5.1 hypothetical protein compare
Pf6N2E2_3839 -3.3 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_3677 -3.3 -11.1 Sensory box/GGDEF family protein compare
Pf6N2E2_4810 -3.3 -7.2 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_2565 -3.3 -7.5 CheW domain protein conserved
Pf6N2E2_5331 -3.3 -8.2 ATPase, AFG1 family compare
Pf6N2E2_2180 -3.2 -3.7 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_4417 -3.2 -4.1 Protein of unknown function DUF484 compare
Pf6N2E2_2274 -3.2 -6.8 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_2568 -3.2 -5.3 Flagellar motor rotation protein MotA conserved
Pf6N2E2_2509 -3.2 -1.8 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_2310 -3.1 -10.5 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_2277 -3.1 -3.2 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_5242 -3.1 -2.8 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_69 -3.1 -5.6 Probable type IV pilus assembly FimV-related transmembrane protein conserved
Pf6N2E2_2752 -3.1 -9.6 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_3607 -3.1 -7.9 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2625 -3.0 -3.2 Flagellar P-ring protein FlgI compare
Pf6N2E2_5508 -3.0 -2.7 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_4759 -3.0 -11.9 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_4762 -2.9 -2.0 Biotin synthesis protein BioH compare
Pf6N2E2_4710 -2.9 -2.2 hypothetical protein compare
Pf6N2E2_3807 -2.9 -3.5 Histidine utilization repressor compare
Pf6N2E2_2626 -2.8 -6.0 Flagellar L-ring protein FlgH compare
Pf6N2E2_2513 -2.8 -4.2 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_4071 -2.8 -4.2 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_2628 -2.8 -2.1 Flagellar basal-body rod protein FlgF compare
Pf6N2E2_4585 -2.8 -9.9 Cell division protein FtsX compare
Pf6N2E2_4889 -2.8 -5.6 Putative transport protein compare
Pf6N2E2_2507 -2.7 -5.3 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_5001 -2.7 -2.2 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_4273 -2.6 -7.1 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_4773 -2.6 -1.1 Coenzyme PQQ synthesis protein D compare
Pf6N2E2_4969 -2.6 -1.1 hypothetical protein compare
Pf6N2E2_3461 -2.6 -1.2 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5520 -2.6 -6.5 Sensory box histidine kinase compare
Pf6N2E2_3844 -2.6 -2.4 hypothetical protein compare
Pf6N2E2_5771 -2.6 -6.1 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_4416 -2.6 -2.9 Tyrosine recombinase XerC compare
Pf6N2E2_2589 -2.6 -2.9 Flagellar protein FliJ compare
Pf6N2E2_6140 -2.6 -1.1 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_2708 -2.6 -5.2 Lactam utilization protein LamB compare
Pf6N2E2_3258 -2.6 -5.7 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_156 -2.5 -2.1 Carbon storage regulator compare
Pf6N2E2_5014 -2.5 -1.0 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_2303 -2.5 -6.2 Aerotaxis receptor Aer conserved
Pf6N2E2_2880 -2.5 -2.3 FIG00959696: hypothetical protein compare
Pf6N2E2_3786 -2.5 -3.2 Twin-arginine translocation protein TatC compare
Pf6N2E2_4631 -2.4 -7.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_5893 -2.4 -5.8 FIG00956448: hypothetical protein conserved
Pf6N2E2_3658 -2.4 -7.5 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2176 -2.4 -1.7 Amidases related to nicotinamidase compare
Pf6N2E2_5252 -2.4 -1.7 FIG00956396: hypothetical protein compare
Pf6N2E2_2566 -2.4 -5.2 Chromosome (plasmid) partitioning protein ParA conserved
Pf6N2E2_6063 -2.4 -6.6 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_2827 -2.4 -1.1 hypothetical protein compare
Pf6N2E2_5693 -2.4 -5.7 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) conserved
Pf6N2E2_2428 -2.3 -2.5 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_4763 -2.3 -7.2 Biotin synthesis protein BioC compare
Pf6N2E2_4047 -2.3 -4.6 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_3257 -2.3 -4.7 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_1136 -2.3 -1.9 Transcriptional regulator, TetR family compare
Pf6N2E2_3667 -2.3 -1.6 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_4353 -2.3 -4.2 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_5536 -2.3 -2.2 Holliday junction DNA helicase RuvA compare
Pf6N2E2_5178 -2.3 -2.0 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_928 -2.2 -2.9 Copper metallochaperone, bacterial analog of Cox17 protein compare
Pf6N2E2_4278 -2.2 -7.3 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf6N2E2_4640 -2.2 -1.4 hypothetical protein compare
Pf6N2E2_2313 -2.2 -2.8 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_5963 -2.2 -5.5 lipoprotein, putative conserved
Pf6N2E2_3753 -2.2 -8.2 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_4761 -2.1 -5.5 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_3096 -2.1 -1.1 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_4187 -2.1 -3.7 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_2634 -2.1 -7.9 Potassium uptake protein TrkH compare
Pf6N2E2_5390 -2.1 -6.5 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf6N2E2_4084 -2.0 -3.8 Transcriptional regulator compare
Pf6N2E2_4165 -2.0 -3.7 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf6N2E2_4168 -2.0 -5.5 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf6N2E2_5733 -2.0 -3.1 NLP/P60 family protein compare
Pf6N2E2_4661 -2.0 -2.6 KluA regulatory protein compare
Pf6N2E2_4638 -2.0 -3.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_4205 -2.0 -2.4 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_4579 -2.0 -1.7 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_1625 -2.0 -2.6 Ferric reductase (1.6.99.14) compare
Pf6N2E2_2552 -2.0 -3.9 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_4279 -2.0 -5.9 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_4162 -2.0 -3.5 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_5589 -1.9 -3.5 Sodium-type flagellar protein motY precursor conserved
Pf6N2E2_88 -1.9 -1.4 hypothetical protein compare
Pf6N2E2_2514 -1.9 -3.6 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_70 -1.9 -3.0 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_5346 -1.9 -3.2 rRNA small subunit methyltransferase I compare
Pf6N2E2_5727 -1.9 -5.2 FIG00955360: hypothetical protein compare
Pf6N2E2_3303 -1.9 -3.5 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_2316 -1.9 -6.5 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf6N2E2_2526 -1.9 -3.3 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_5223 -1.9 -2.7 Molybdopterin biosynthesis protein MoeB compare
Pf6N2E2_987 -1.9 -1.5 hypothetical protein compare
Pf6N2E2_5068 -1.9 -7.7 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5129 -1.8 -7.9 ClpB protein conserved
Pf6N2E2_3406 -1.8 -3.8 putative ABC transporter ATP-binding protein compare
Pf6N2E2_3039 -1.8 -4.2 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_2707 -1.8 -2.8 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_5944 -1.8 -4.0 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_2561 -1.8 -2.0 FIG00955434: hypothetical protein compare
Pf6N2E2_4120 -1.8 -7.3 Trk system potassium uptake protein TrkA compare


Specific Phenotypes

For 46 genes in this experiment

For motility Agar in Pseudomonas fluorescens FW300-N2E2

For motility Agar across organisms