Experiment set3IT090 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Xantho_MME_glucose_dropout_LTH

200 most important genes:

  gene name fitness t score description  
Xcc-8004.2945.1 -6.4 -4.4 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Xcc-8004.2011.1 -6.1 -4.2 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.622.1 -6.0 -4.1 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.2946.1 -5.8 -4.0 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Xcc-8004.2942.1 -5.7 -5.5 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
Xcc-8004.5192.1 -5.5 -11.8 hypothetical protein compare
Xcc-8004.2947.1 -5.5 -5.3 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Xcc-8004.1964.1 -5.4 -11.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Xcc-8004.1372.1 -5.3 -6.3 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.3537.1 -5.2 -5.1 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) compare
Xcc-8004.2944.1 -5.1 -7.8 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
Xcc-8004.1053.1 -4.9 -9.4 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Xcc-8004.1049.1 -4.9 -8.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Xcc-8004.618.1 -4.9 -4.7 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.1615.1 -4.8 -3.3 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.621.1 -4.7 -6.4 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Xcc-8004.2948.1 -4.6 -9.3 Histidinol dehydrogenase (EC 1.1.1.23) compare
Xcc-8004.659.1 -4.6 -3.2 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.5193.1 -4.6 -21.7 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.5020.1 -4.5 -6.7 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Xcc-8004.2943.1 -4.4 -7.9 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) compare
Xcc-8004.1010.1 -4.4 -7.9 Aspartate aminotransferase (EC 2.6.1.1) compare
Xcc-8004.3281.1 -4.3 -9.2 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.4481.1 -4.3 -9.1 hypothetical protein compare
Xcc-8004.1967.1 -4.3 -11.4 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Xcc-8004.271.1 -4.3 -5.1 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.4620.1 -4.3 -10.6 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.657.1 -4.0 -10.6 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.2012.1 -3.9 -9.4 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.2406.1 -3.9 -13.6 Manganese transport protein MntH compare
Xcc-8004.601.1 -3.8 -11.0 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.608.1 -3.6 -9.3 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Xcc-8004.2447.1 -3.6 -16.5 Phosphogluconate dehydratase (EC 4.2.1.12) compare
Xcc-8004.4510.1 -3.6 -2.4 ATP binding component of ABC-transporter compare
Xcc-8004.130.1 -3.6 -10.4 hypothetical protein compare
Xcc-8004.3283.1 -3.5 -9.6 Phosphoserine aminotransferase (EC 2.6.1.52) compare
Xcc-8004.1241.1 -3.5 -7.5 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.2931.1 -3.5 -6.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Xcc-8004.2079.1 -3.4 -4.7 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.1050.1 -3.4 -3.0 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Xcc-8004.2086.1 -3.4 -3.3 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.1489.1 -3.4 -15.0 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I compare
Xcc-8004.1955.1 -3.4 -8.6 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.2450.1 -3.4 -17.7 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Xcc-8004.4948.1 -3.4 -3.9 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.4112.1 -3.3 -6.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.1710.1 -3.0 -5.4 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.2449.1 -3.0 -7.4 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.4439.1 -3.0 -12.3 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.2949.1 -2.9 -3.6 ATP phosphoribosyltransferase (EC 2.4.2.17) compare
Xcc-8004.1359.1 -2.9 -7.8 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.4111.1 -2.9 -5.7 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase II (EC 2.5.1.54) compare
Xcc-8004.505.1 -2.9 -10.1 Biotin synthase (EC 2.8.1.6) compare
Xcc-8004.1236.1 -2.8 -6.8 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.1676.1 -2.7 -8.1 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.4398.1 -2.7 -7.9 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.2337.1 -2.7 -6.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.1962.1 -2.7 -2.2 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Xcc-8004.2081.1 -2.6 -5.3 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.3979.1 -2.6 -9.1 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.4200.1 -2.5 -3.4 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.1616.1 -2.4 -2.0 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.2922.1 -2.4 -2.9 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.3313.1 -2.4 -4.8 LSU ribosomal protein L9p compare
Xcc-8004.2165.1 -2.3 -12.7 Ornithine aminotransferase (EC 2.6.1.13); Succinylornithine transaminase (EC 2.6.1.81); Acetylornithine aminotransferase (EC 2.6.1.11); N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) compare
Xcc-8004.3576.1 -2.3 -9.6 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.623.1 -2.2 -2.8 Phosphoserine phosphatase compare
Xcc-8004.2259.1 -2.2 -5.7 PhbF compare
Xcc-8004.3325.1 -2.2 -5.9 3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6) compare
Xcc-8004.3815.1 -2.0 -3.1 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.4752.1 -2.0 -2.9 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.1196.1 -2.0 -6.8 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.4985.1 -2.0 -9.4 Arginase (EC 3.5.3.1) compare
Xcc-8004.1056.1 -2.0 -2.8 2-isopropylmalate synthase (EC 2.3.3.13) compare
Xcc-8004.1132.1 -2.0 -3.2 Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) compare
Xcc-8004.3976.1 -1.9 -4.0 2-methylaconitate cis-trans isomerase compare
Xcc-8004.1763.1 -1.9 -3.3 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.2009.1 -1.9 -8.2 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Xcc-8004.3647.1 -1.7 -3.7 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.1567.1 -1.7 -4.4 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) compare
Xcc-8004.3327.1 -1.6 -6.7 Kynureninase (EC 3.7.1.3) compare
Xcc-8004.2936.1 -1.6 -8.9 Amino acid transporters compare
Xcc-8004.1436.1 -1.6 -2.5 Holliday junction DNA helicase RuvA compare
Xcc-8004.713.1 -1.6 -2.3 FIG01210186: hypothetical protein compare
Xcc-8004.4824.1 -1.5 -9.2 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.4073.1 -1.5 -7.7 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.4082.1 -1.5 -9.1 L-threonine 3-dehydrogenase (EC 1.1.1.103) compare
Xcc-8004.2935.1 -1.5 -10.2 Amino acid transporters compare
Xcc-8004.1243.1 -1.5 -7.4 Pyruvate kinase (EC 2.7.1.40) compare
Xcc-8004.1284.1 -1.5 -7.3 Thiazole biosynthesis protein ThiG compare
Xcc-8004.3328.1 -1.4 -5.6 Kynurenine 3-monooxygenase (EC 1.14.13.9) compare
Xcc-8004.4046.1 -1.4 -7.6 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.2950.1 -1.4 -2.6 His repressor compare
Xcc-8004.2217.1 -1.4 -3.7 FIG01209779: hypothetical protein compare
Xcc-8004.4364.1 -1.3 -5.0 Cell division protein MraZ compare
Xcc-8004.914.1 -1.3 -5.5 tail-specific protease compare
Xcc-8004.1523.1 -1.3 -8.6 Type I restriction-modification system, restriction subunit R (EC 3.1.21.3) compare
Xcc-8004.4170.1 -1.3 -2.8 LSU ribosomal protein L25p compare
Xcc-8004.234.1 -1.3 -8.4 cardiolipin synthase compare
Xcc-8004.270.1 -1.2 -3.9 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.3091.1 -1.2 -5.0 hypothetical protein compare
Xcc-8004.3955.1 -1.2 -4.3 HflK protein compare
Xcc-8004.337.1 -1.2 -2.8 ATPase, AFG1 family compare
Xcc-8004.4743.1 -1.2 -3.5 Peptide deformylase (EC 3.5.1.88) compare
Xcc-8004.2833.1 -1.2 -2.6 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.4039.1 -1.2 -3.2 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.4507.1 -1.2 -5.2 Glycosyltransferase compare
Xcc-8004.1511.1 -1.2 -2.4 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.2910.1 -1.2 -3.8 Regulatory protein, RpfE type compare
Xcc-8004.1365.1 -1.2 -1.5 FIG01211058: hypothetical protein compare
Xcc-8004.2929.1 -1.2 -4.1 D-2-hydroxyglutarate dehydrogenase compare
Xcc-8004.4340.1 -1.2 -3.2 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) / Thiamin-phosphate pyrophosphorylase-like protein compare
Xcc-8004.3853.1 -1.2 -2.2 DNA-3-methyladenine glycosylase II (EC 3.2.2.21) compare
Xcc-8004.5369.1 -1.2 -4.4 Lipoprotein compare
Xcc-8004.3304.1 -1.1 -1.5 FIG01211108: hypothetical protein compare
Xcc-8004.3878.1 -1.1 -7.1 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) compare
Xcc-8004.5133.1 -1.1 -1.8 FIG01212313: hypothetical protein compare
Xcc-8004.3817.1 -1.1 -5.1 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Xcc-8004.4199.1 -1.1 -6.4 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Xcc-8004.2561.1 -1.1 -5.1 FIG01213638: hypothetical protein compare
Xcc-8004.2730.1 -1.1 -4.3 Molybdopterin biosynthesis protein MoeB compare
Xcc-8004.2711.1 -1.1 -1.9 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Xcc-8004.2385.1 -1.1 -5.7 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.3054.1 -1.1 -2.1 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.3324.1 -1.1 -4.2 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.573.1 -1.1 -5.7 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) compare
Xcc-8004.3942.1 -1.1 -2.3 RelE/StbE replicon stabilization toxin compare
Xcc-8004.4088.1 -1.1 -7.2 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29) compare
Xcc-8004.3208.1 -1.1 -2.1 Methyltransferase type 12 compare
Xcc-8004.5130.1 -1.1 -3.4 hypothetical protein compare
Xcc-8004.1677.1 -1.1 -3.0 FIG01209993: hypothetical protein compare
Xcc-8004.1673.1 -1.1 -3.1 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Xcc-8004.5317.1 -1.0 -2.1 FIG01210332: hypothetical protein compare
Xcc-8004.5352.1 -1.0 -1.8 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.3479.1 -1.0 -1.8 aklaviketone reductase compare
Xcc-8004.4501.1 -1.0 -3.6 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Xcc-8004.1086.1 -1.0 -2.1 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4514.1 -1.0 -6.6 Glycosyltransferase compare
Xcc-8004.3792.1 -0.9 -1.6 Mobile element protein compare
Xcc-8004.3722.1 -0.9 -1.1 HrpB7 protein compare
Xcc-8004.5048.1 -0.9 -4.5 permease compare
Xcc-8004.4480.1 -0.9 -5.9 Phosphomannomutase (EC 5.4.2.8) compare
Xcc-8004.4844.1 -0.9 -1.2 FIG01210764: hypothetical protein compare
Xcc-8004.4530.1 -0.9 -3.6 Dethiobiotin synthetase (EC 6.3.3.3) compare
Xcc-8004.3653.1 -0.9 -1.6 FIG01212122: hypothetical protein compare
Xcc-8004.252.1 -0.9 -4.8 Nitrogen regulation protein NtrC compare
Xcc-8004.638.1 -0.9 -5.9 Bacterioferritin compare
Xcc-8004.4737.1 -0.9 -3.9 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.4250.1 -0.9 -1.5 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Xcc-8004.5132.1 -0.9 -4.2 Heavy metal RND efflux outer membrane protein, CzcC family compare
Xcc-8004.703.1 -0.9 -1.5 hypothetical protein compare
Xcc-8004.3696.1 -0.9 -2.0 hypothetical protein compare
Xcc-8004.1562.1 -0.9 -1.8 3'(2'),5'-bisphosphate nucleotidase (EC 3.1.3.7) compare
Xcc-8004.1839.1 -0.9 -1.1 FIG01210863: hypothetical protein compare
Xcc-8004.1966.1 -0.9 -2.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.3492.1 -0.9 -1.4 FIG01211425: hypothetical protein compare
Xcc-8004.165.1 -0.9 -1.8 hypothetical protein compare
Xcc-8004.1933.1 -0.9 -1.8 FIG01209679: hypothetical protein compare
Xcc-8004.3676.1 -0.9 -1.8 Translation elongation factor LepA compare
Xcc-8004.1859.1 -0.9 -2.1 Transcriptional regulator compare
Xcc-8004.1247.1 -0.9 -2.2 Cysteine synthase (EC 2.5.1.47) compare
Xcc-8004.2386.1 -0.8 -5.9 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Xcc-8004.2754.1 -0.8 -5.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Xcc-8004.3954.1 -0.8 -3.2 HflC protein compare
Xcc-8004.4210.1 -0.8 -4.0 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.2865.1 -0.8 -1.7 FIG01210234: hypothetical protein compare
Xcc-8004.4485.1 -0.8 -5.1 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Xcc-8004.4517.1 -0.8 -5.2 Cystathionine gamma-lyase (EC 4.4.1.1) compare
Xcc-8004.1891.1 -0.8 -1.5 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
Xcc-8004.5203.1 -0.8 -1.8 Twin-arginine translocation protein TatB compare
Xcc-8004.3816.1 -0.8 -4.0 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.5252.1 -0.8 -4.3 FIG01210658: hypothetical protein compare
Xcc-8004.5363.1 -0.8 -2.6 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Xcc-8004.4984.1 -0.8 -2.4 hypothetical protein compare
Xcc-8004.4518.1 -0.8 -6.2 Cystathionine beta-synthase (EC 4.2.1.22) compare
Xcc-8004.4105.1 -0.8 -1.9 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) compare
Xcc-8004.4982.1 -0.8 -2.1 Protein yjbJ compare
Xcc-8004.2131.1 -0.8 -2.4 Predicted 4-hydroxyproline dipeptidase compare
Xcc-8004.679.1 -0.8 -1.9 23Sr RNA gene compare
Xcc-8004.3248.1 -0.8 -4.5 hypothetical protein compare
Xcc-8004.2401.1 -0.8 -1.5 FIG00545367: hypothetical protein compare
Xcc-8004.1009.1 -0.8 -2.2 Lysophospholipase L1 and related esterases compare
Xcc-8004.3433.1 -0.8 -3.8 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.2930.1 -0.8 -1.8 hypothetical protein compare
Xcc-8004.456.1 -0.8 -1.6 carbonic anhydrase, family 3 compare
Xcc-8004.4026.1 -0.8 -3.5 FIG01209666: hypothetical protein compare
Xcc-8004.4373.1 -0.8 -3.0 LppC putative lipoprotein compare
Xcc-8004.4503.1 -0.8 -3.1 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.5214.1 -0.7 -2.9 sal operon transcriptional repressor compare
Xcc-8004.4486.1 -0.7 -5.9 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.4049.1 -0.7 -2.9 Cell division trigger factor (EC 5.2.1.8) compare
Xcc-8004.2652.1 -0.7 -1.8 response regulator compare
Xcc-8004.3379.1 -0.7 -3.1 Transcriptional regulator, ArsR family / Methyltransferase fusion compare
Xcc-8004.3013.1 -0.7 -1.6 hypothetical protein compare
Xcc-8004.1890.1 -0.7 -2.8 hypothetical protein compare
Xcc-8004.4224.1 -0.7 -2.7 Hydrogen peroxide-inducible genes activator compare
Xcc-8004.2924.1 -0.7 -2.9 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.5199.1 -0.7 -1.9 hypothetical protein compare
Xcc-8004.178.1 -0.7 -1.5 hypothetical protein compare
Xcc-8004.4025.1 -0.7 -4.5 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare


Specific Phenotypes

For 9 genes in this experiment