Experiment set3IT090 for Shewanella loihica PV-4

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
Shew_0296 +2.5 5.0 heat shock protein Hsp20 (RefSeq) compare
Shew_1601 +2.3 6.9 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_2572 +2.1 13.5 enoyl-CoA hydratase/isomerase (RefSeq) compare
Shew_2049 +2.0 9.9 DNA-binding transcriptional regulator HexR (RefSeq) compare
Shew_1058 +2.0 9.3 holo-acyl-carrier-protein synthase (RefSeq) compare
Shew_1298 guaA +1.8 14.6 bifunctional GMP synthase/glutamine amidotransferase protein (RefSeq) compare
Shew_1013 +1.8 17.8 aspartate carbamoyltransferase (RefSeq) compare
Shew_1341 +1.8 9.1 anti-sigma-28 factor, FlgM (RefSeq) compare
Shew_0755 +1.8 9.7 fructose-1,6-bisphosphate aldolase (RefSeq) compare
Shew_3487 pyrE +1.7 13.1 orotate phosphoribosyltransferase (RefSeq) compare
Shew_0728 +1.7 15.6 dihydroorotase (RefSeq) compare
Shew_2642 +1.7 6.0 flavodoxin (RefSeq) compare
Shew_1713 +1.6 2.8 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_3247 +1.5 1.7 hypothetical protein (RefSeq) compare
Shew_1224 +1.5 12.5 sodium:dicarboxylate symporter (RefSeq) compare
Shew_0383 +1.5 8.9 malate dehydrogenase (RefSeq) compare
Shew_3660 +1.5 12.3 glutathione reductase (RefSeq) compare
Shew_1602 +1.4 3.7 malonyl CoA-acyl carrier protein transacylase (RefSeq) compare
Shew_1202 +1.4 8.3 (p)ppGpp synthetase I, SpoT/RelA (RefSeq) compare
Shew_1563 +1.4 6.1 isocitrate dehydrogenase, NADP-dependent (RefSeq) compare
Shew_3682 +1.4 12.0 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) compare
Shew_1810 +1.4 9.7 dihydroorotate dehydrogenase 2 (RefSeq) compare
Shew_3681 +1.4 10.1 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_0469 +1.4 1.3 pentapeptide repeat-containing protein (RefSeq) compare
Shew_2906 +1.4 3.1 hypothetical protein (RefSeq) compare
Shew_2839 +1.3 12.7 carbamoyl phosphate synthase small subunit (RefSeq) compare
Shew_2838 carB +1.3 9.9 carbamoyl phosphate synthase large subunit (RefSeq) compare
Shew_2000 +1.3 3.8 glyceraldehyde-3-phosphate dehydrogenase (RefSeq) compare
Shew_1819 +1.3 4.3 GntR family transcriptional regulator (RefSeq) compare
Shew_3500 +1.3 4.4 putative endoribonuclease L-PSP (RefSeq) compare
Shew_2409 +1.2 3.7 short chain dehydrogenase (RefSeq) compare
Shew_3410 +1.2 7.8 permease (RefSeq) compare
Shew_0594 +1.2 3.3 hypothetical protein (RefSeq) compare
Shew_0421 +1.2 1.4 phage shock protein C, PspC (RefSeq) compare
Shew_1606 +1.2 1.3 hypothetical protein (RefSeq) compare
Shew_3617 +1.2 1.2 general secretion pathway protein F (RefSeq) compare
Shew_3499 +1.1 5.0 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) compare
Shew_0534 +1.1 4.0 major facilitator transporter (RefSeq) compare
Shew_1716 +1.1 1.7 3-beta hydroxysteroid dehydrogenase/isomerase (RefSeq) compare
Shew_3695 +1.1 1.8 cytidyltransferase-like protein (RefSeq) compare
Shew_1667 +1.1 2.4 acetyl-CoA acetyltransferase (RefSeq) compare
Shew_0966 +1.1 2.1 beta alanine--pyruvate transaminase (RefSeq) compare
Shew_2668 +1.1 4.2 2-nitropropane dioxygenase, NPD (RefSeq) compare
Shew_3442 +1.0 2.0 hypothetical protein (RefSeq) compare
Shew_1714 +1.0 2.1 alpha/beta hydrolase fold (RefSeq) compare
Shew_0698 +1.0 4.1 Na+/H+ antiporter NhaC (RefSeq) compare
Shew_1865 +1.0 4.9 phosphoenolpyruvate-protein phosphotransferase (RefSeq) compare
Shew_1427 +1.0 1.9 3'(2'),5'-bisphosphate nucleotidase (RefSeq) compare
Shew_3295 +1.0 4.5 AFG1 family ATPase (RefSeq) compare
Shew_2918 +1.0 1.2 hypothetical protein (RefSeq) compare
Shew_1867 +1.0 3.1 hypothetical protein (RefSeq) compare
Shew_2665 +1.0 7.3 beta-ketoacyl synthase (RefSeq) compare
Shew_0738 +1.0 1.0 NTPase (RefSeq) compare
Shew_2667 +1.0 6.8 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq) compare
Shew_2573 +0.9 6.0 carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq) compare
Shew_3710 tdh +0.9 6.4 L-threonine 3-dehydrogenase (RefSeq) compare
Shew_3709 +0.9 7.4 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq) compare
Shew_2664 +0.9 4.0 transcriptional regulator, putative (RefSeq) compare
Shew_2558 +0.9 3.9 1,4-dihydroxy-2-naphthoate octaprenyltransferase (RefSeq) compare
Shew_0763 +0.9 6.1 putative PAS/PAC sensor protein (RefSeq) compare
Shew_3054 +0.9 1.6 hypothetical protein (RefSeq) compare
Shew_1531 grxA +0.9 2.9 glutaredoxin 1 (RefSeq) compare
Shew_0098 +0.9 6.4 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_2174 +0.9 1.9 fatty acid metabolism regulator (RefSeq) compare
Shew_2469 +0.9 1.0 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_2320 +0.9 5.9 RNA methyltransferase (RefSeq) compare
Shew_3708 +0.8 5.5 TetR family transcriptional regulator (RefSeq) compare
Shew_2415 +0.8 1.6 major facilitator transporter (RefSeq) compare
Shew_1146 +0.8 4.0 hypothetical protein (RefSeq) compare
Shew_2795 +0.8 4.6 xanthine/uracil/vitamin C permease (RefSeq) compare
Shew_2666 +0.8 3.9 omega-3 polyunsaturated fatty acid synthase PfaB (RefSeq) compare
Shew_2349 +0.8 2.6 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_2072 +0.8 1.0 endonuclease III (RefSeq) compare
Shew_3271 +0.8 5.8 galactokinase (RefSeq) compare
Shew_1050 +0.8 5.9 sigma E regulatory protein, MucB/RseB (RefSeq) compare
Shew_1092 +0.8 4.7 amino acid carrier protein (RefSeq) compare
Shew_1500 +0.8 0.9 signal transduction protein (RefSeq) compare
Shew_3716 +0.8 3.4 cytochrome c, class I (RefSeq) compare
Shew_3131 +0.7 5.3 poly(A) polymerase (RefSeq) compare
Shew_0799 +0.7 2.3 MarR family transcriptional regulator (RefSeq) compare
Shew_3423 +0.7 1.3 anti-RNA polymerase sigma 70 factor (RefSeq) compare
Shew_2907 +0.7 2.1 invasion gene expression up-regulator, SirB (RefSeq) compare
Shew_1227 +0.7 1.3 glutamate--cysteine ligase (RefSeq) compare
Shew_1769 +0.7 1.1 NapD family protein (RefSeq) compare
Shew_3225 +0.7 4.1 glutathione synthetase (RefSeq) compare
Shew_1682 +0.7 1.8 ribonuclease H (RefSeq) compare
Shew_0842 +0.7 1.6 two component LuxR family transcriptional regulator (RefSeq) compare
Shew_0932 +0.7 1.2 radical SAM domain-containing protein (RefSeq) compare
Shew_3378 +0.7 1.2 Sec-independent protein translocase, TatC subunit (RefSeq) compare
Shew_3432 pdhR +0.7 3.2 transcriptional regulator PdhR (RefSeq) compare
Shew_2571 +0.7 5.8 propionyl-CoA carboxylase (RefSeq) compare
Shew_1809 +0.7 4.7 NAD-glutamate dehydrogenase (RefSeq) compare
Shew_3273 +0.7 4.2 hypothetical protein (RefSeq) compare
Shew_1878 +0.7 0.9 2-nitropropane dioxygenase, NPD (RefSeq) compare
Shew_2708 +0.7 2.5 Na(+)-translocating NADH-quinone reductase subunit B (RefSeq) compare
Shew_3522 +0.7 1.1 hypothetical protein (RefSeq) compare
Shew_3339 +0.7 1.6 glutathione-dependent formaldehyde-activating, GFA (RefSeq) compare
Shew_2324 +0.7 0.9 type IV pilus assembly PilZ (RefSeq) compare
Shew_3336 +0.7 0.9 MarR family transcriptional regulator (RefSeq) compare
Shew_1437 +0.7 3.8 transcriptional regulator, TyrR (RefSeq) compare
Shew_0618 +0.7 1.2 hypothetical protein (RefSeq) compare
Shew_1078 +0.7 5.2 peptidylprolyl isomerase, FKBP-type (RefSeq) compare
Shew_1231 +0.7 1.5 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) compare
Shew_2837 +0.7 0.9 transcription elongation factor GreA (RefSeq) compare
Shew_2917 +0.6 1.2 hypothetical protein (RefSeq) compare
Shew_1431 +0.6 1.5 hypothetical protein (RefSeq) compare
Shew_0097 +0.6 4.0 two component transcriptional regulator (RefSeq) compare
Shew_1281 +0.6 1.5 hypothetical protein (RefSeq) compare
Shew_2698 +0.6 1.2 hypothetical protein (RefSeq) compare
Shew_3388 +0.6 0.5 hypothetical protein (RefSeq) compare
Shew_2026 +0.6 1.9 alanine dehydrogenase (RefSeq) compare
Shew_0688 +0.6 2.2 dihydropteridine reductase (RefSeq) compare
Shew_1389 +0.6 1.0 cobyrinic acid a,c-diamide synthase (RefSeq) compare
Shew_1574 +0.6 3.0 ATP-binding Mrp/Nbp35 family protein (RefSeq) compare
Shew_3711 +0.6 0.6 rhodanese domain-containing protein (RefSeq) compare
Shew_2347 +0.6 1.9 phosphonate ABC transporter, periplasmic phosphonate-binding protein (RefSeq) compare
Shew_3201 +0.6 1.3 ABC transporter-related protein (RefSeq) compare
Shew_0395 +0.6 1.3 methylation site containing protein (RefSeq) compare
Shew_2105 +0.6 0.6 methylated-DNA-(protein)-cysteine S-methyltransferase (RefSeq) compare
Shew_2389 +0.6 1.9 hypothetical protein (RefSeq) compare
Shew_2400 +0.6 2.9 hypothetical protein (RefSeq) compare
Shew_2728 +0.6 1.5 hypothetical protein (RefSeq) compare
Shew_0821 +0.6 1.1 mitomycin resistance protein (RefSeq) compare
Shew_2895 +0.5 2.8 2-dehydropantoate 2-reductase (RefSeq) compare
Shew_0316 +0.5 3.1 protein of unknown function DUF513, hemX (RefSeq) compare
Shew_1631 +0.5 1.7 hypothetical protein (RefSeq) compare
Shew_1906 +0.5 1.2 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_2437 +0.5 0.7 hypothetical protein (RefSeq) compare
Shew_2033 +0.5 1.0 hypothetical protein (RefSeq) compare
Shew_3664 +0.5 3.7 alpha-L-glutamate ligase (RefSeq) compare
Shew_3430 +0.5 1.3 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (RefSeq) compare
Shew_3775 +0.5 1.3 thioesterase superfamily protein (RefSeq) compare
Shew_3122 +0.5 0.6 PepSY-associated TM helix domain-containing protein (RefSeq) compare
Shew_2611 +0.5 2.6 ABC transporter-related protein (RefSeq) compare
Shew_2263 +0.5 1.3 methyl-accepting chemotaxis sensory transducer (RefSeq) compare
Shew_1811 +0.5 3.0 hypothetical protein (RefSeq) compare
Shew_1920 +0.5 2.6 alpha/beta hydrolase fold (RefSeq) compare
Shew_3772 +0.5 0.8 thioesterase superfamily protein (RefSeq) compare
Shew_3517 +0.5 3.3 histidine ammonia-lyase (RefSeq) compare
Shew_0615 +0.5 2.6 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (RefSeq) compare
Shew_0096 +0.5 1.3 hypothetical protein (RefSeq) compare
Shew_1969 +0.5 1.4 two component LuxR family transcriptional regulator (RefSeq) compare
Shew_1812 +0.5 3.3 23S rRNA m(2)G2445 methyltransferase (RefSeq) compare
Shew_2730 +0.5 0.9 glutathione S-transferase domain-containing protein (RefSeq) compare
Shew_1814 +0.5 1.5 ABC transporter ATPase component (RefSeq) compare
Shew_2445 +0.5 1.4 hypothetical protein (RefSeq) compare
Shew_R0049 +0.5 1.8 tRNA-Pro (RefSeq) compare
Shew_1883 +0.5 0.5 hypothetical protein (RefSeq) compare
Shew_2656 +0.5 2.7 4'-phosphopantetheinyl transferase (RefSeq) compare
Shew_1820 prpB +0.5 1.7 2-methylisocitrate lyase (RefSeq) compare
Shew_0848 +0.5 0.6 hypothetical protein (RefSeq) compare
Shew_2384 +0.5 1.8 O-methyltransferase family protein (RefSeq) compare
Shew_3064 gcvT +0.5 3.2 glycine cleavage system aminomethyltransferase T (RefSeq) compare
Shew_0616 +0.5 1.9 SH3 domain-containing protein (RefSeq) compare
Shew_0581 +0.5 2.1 hypothetical protein (RefSeq) compare
Shew_0487 +0.5 1.1 redox-active disulfide protein 2 (RefSeq) compare
Shew_2584 +0.5 2.7 electron transfer flavoprotein beta-subunit (RefSeq) compare
Shew_0086 +0.5 3.6 electron-transferring-flavoproteindehydrogenase (RefSeq) compare
Shew_2806 +0.5 0.5 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_0127 +0.5 2.1 LexA repressor (RefSeq) compare
Shew_1021 +0.5 2.8 peptidase M23B (RefSeq) compare
Shew_3431 aceE +0.5 3.5 pyruvate dehydrogenase subunit E1 (RefSeq) compare
Shew_0116 +0.5 2.0 electron transport protein SCO1/SenC (RefSeq) compare
Shew_1424 +0.5 1.5 TrkA domain-containing protein (RefSeq) compare
Shew_2705 +0.5 1.6 Na(+)-translocating NADH-quinone reductase subunit E (RefSeq) compare
Shew_0206 +0.5 3.7 argininosuccinate lyase (RefSeq) compare
Shew_3601 +0.5 3.4 O-succinylbenzoate synthase (RefSeq) compare
Shew_0548 +0.5 1.8 yqiA-like hydrolase, affects the cell envelope (from data) compare
Shew_1186 +0.5 1.4 transcriptional regulator NrdR (RefSeq) compare
Shew_0834 +0.5 0.5 hypothetical protein (RefSeq) compare
Shew_3204 +0.4 1.4 cytochrome B561 (RefSeq) compare
Shew_0722 +0.4 0.7 hypothetical protein (RefSeq) compare
Shew_1510 +0.4 1.1 peptidase M28 (RefSeq) compare
Shew_3488 +0.4 1.1 ribonuclease PH (RefSeq) compare
Shew_1114 +0.4 0.9 SapC family protein (RefSeq) compare
Shew_2187 +0.4 0.6 ribonuclease D (RefSeq) compare
Shew_3521 +0.4 2.6 tryptophan halogenase (RefSeq) compare
Shew_0795 +0.4 0.8 hypothetical protein (RefSeq) compare
Shew_0854 +0.4 2.2 hypothetical protein (RefSeq) compare
Shew_2167 +0.4 1.1 hypothetical protein (RefSeq) compare
Shew_0414 +0.4 2.2 ABC-2 type transporter (RefSeq) compare
Shew_0580 +0.4 2.4 succinylglutamic semialdehyde dehydrogenase (RefSeq) compare
Shew_2862 +0.4 1.4 short chain dehydrogenase (RefSeq) compare
Shew_0626 +0.4 1.3 hypothetical protein (RefSeq) compare
Shew_2514 +0.4 1.3 tRNA--hydroxylase (RefSeq) compare
Shew_1807 +0.4 1.6 BNR repeat-containing protein (RefSeq) compare
Shew_2089 +0.4 2.0 SrpA-related protein (RefSeq) compare
Shew_2223 +0.4 0.6 YceI family protein (RefSeq) compare
Shew_3537 +0.4 1.1 hypothetical protein (RefSeq) compare
Shew_1304 +0.4 0.6 cyd operon protein YbgT (RefSeq) compare
Shew_2570 +0.4 3.6 acyl-CoA dehydrogenase domain-containing protein (RefSeq) compare
Shew_0218 +0.4 1.7 hypothetical protein (RefSeq) compare
Shew_2165 +0.4 1.1 aldose 1-epimerase (RefSeq) compare
Shew_3364 +0.4 1.1 acetyl-CoA carboxylase, biotin carboxyl carrier protein (RefSeq) compare
Shew_3224 +0.4 1.8 hypothetical protein (RefSeq) compare
Shew_2544 +0.4 0.8 phosphoglucomutase/phosphomannomutase alpha/beta/subunit (RefSeq) compare
Shew_2857 +0.4 0.8 LysR family transcriptional regulator (RefSeq) compare
Shew_0741 +0.4 1.2 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_2280 +0.4 1.1 phenylalanine/histidine ammonia-lyase (RefSeq) compare
Shew_2022 +0.4 0.4 recombination factor protein RarA (RefSeq) compare


Specific Phenotypes

None in this experiment

For Shewanella loihica PV-4 in lb experiments