Experiment set3IT090 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with sodium fluoride 10 mM

200 most important genes:

  gene name fitness t score description  
Ga0059261_1032 -5.6 -5.4 protein CrcB conserved
Ga0059261_1795 -3.5 -6.2 Predicted nucleoside-diphosphate-sugar epimerases compare
Ga0059261_4186 -3.4 -3.3 Phosphopantetheine attachment site compare
Ga0059261_2707 -3.3 -6.8 fructose-1,6-bisphosphatase, class II compare
Ga0059261_0349 -3.0 -5.7 MarR family compare
Ga0059261_0170 -3.0 -5.9 Uncharacterized protein involved in biosynthesis of c-type cytochromes compare
Ga0059261_3488 -2.7 -3.1 Histidine kinase/HAMP domain compare
Ga0059261_4188 -2.6 -7.2 pyridoxal-dependent decarboxylase, exosortase A system-associated compare
Ga0059261_4187 -2.6 -11.5 acyl-CoA ligase (AMP-forming), exosortase A-associated compare
Ga0059261_1696 -2.5 -5.0 Pyridine nucleotide-disulphide oxidoreductase/Reductase C-terminal compare
Ga0059261_2458 -2.5 -10.1 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases compare
Ga0059261_1287 -2.5 -10.8 poly(R)-hydroxyalkanoic acid synthase, class I compare
Ga0059261_2189 -2.4 -8.6 uncharacterized domain 1 compare
Ga0059261_0613 -2.3 -4.9 FecR family protein compare
Ga0059261_0163 -2.2 -3.9 Major Facilitator Superfamily compare
Ga0059261_0171 -2.2 -2.9 Thiol-disulfide isomerase and thioredoxins compare
Ga0059261_0175 -2.2 -8.6 heme exporter protein CcmC compare
Ga0059261_1008 -2.1 -4.8 Geranylgeranyl pyrophosphate synthase compare
Ga0059261_1451 -2.1 -5.1 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) compare
Ga0059261_0172 -1.9 -8.6 Cytochrome c biogenesis factor compare
Ga0059261_2490 -1.8 -6.6 Small protein A (tmRNA-binding) compare
Ga0059261_1911 -1.8 -2.4 Thioredoxin-like proteins and domains compare
Ga0059261_1909 -1.7 -7.5 MAF protein compare
Ga0059261_4012 -1.6 -3.0 AMP nucleosidase compare
Ga0059261_1312 -1.6 -5.0 amino acid/peptide transporter (Peptide:H+ symporter), bacterial compare
Ga0059261_1507 -1.5 -3.0 deoxycytidine triphosphate deaminase compare
Ga0059261_3502 -1.4 -3.1 Fatty acid desaturase compare
Ga0059261_3615 -1.4 -1.8 hypothetical protein compare
Ga0059261_0448 -1.3 -2.1 hypothetical protein compare
Ga0059261_0790 -1.2 -2.0 putative membrane protein insertion efficiency factor compare
Ga0059261_1846 -1.2 -6.9 Xaa-Pro aminopeptidase compare
Ga0059261_2005 -1.2 -4.4 protoheme IX farnesyltransferase compare
Ga0059261_2179 -1.1 -7.1 Phospholipid N-methyltransferase compare
Ga0059261_2417 -1.1 -3.1 phytoene desaturase compare
Ga0059261_2286 -1.1 -4.8 Fe2+ transport system protein B compare
Ga0059261_0369 -1.1 -1.4 ribosomal protein L9 compare
Ga0059261_1564 -1.1 -3.7 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
Ga0059261_2285 -1.1 -1.7 Fe2+ transport system protein A compare
Ga0059261_1560 -1.0 -3.1 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Ga0059261_2194 -1.0 -3.3 shikimate dehydrogenase (EC 1.1.1.25) (from data) compare
Ga0059261_0321 -1.0 -1.1 hypothetical protein compare
Ga0059261_3227 -1.0 -1.8 GTP-binding protein YchF compare
Ga0059261_0131 -1.0 -3.2 hypothetical protein compare
Ga0059261_2181 -0.9 -6.3 penicillin-binding protein, 1A family compare
Ga0059261_3671 -0.9 -1.7 Citrate lyase beta subunit compare
Ga0059261_0174 -0.9 -1.4 hypothetical protein compare
Ga0059261_1145 -0.9 -1.9 flagella basal body P-ring formation protein FlgA compare
Ga0059261_1417 -0.8 -2.5 transcriptional regulator, XRE family compare
Ga0059261_1078 -0.8 -2.2 Response regulator receiver domain compare
Ga0059261_0153 -0.8 -2.6 Serine acetyltransferase compare
Ga0059261_3430 -0.8 -2.1 NADH:ubiquinone oxidoreductase 17.2 kD subunit compare
Ga0059261_0623 -0.8 -3.1 ABC-type Fe3+-siderophore transport system, permease component compare
Ga0059261_0059 -0.8 -1.7 Stress-induced morphogen (activity unknown) compare
Ga0059261_1912 -0.8 -2.1 Nitroreductase compare
Ga0059261_3945 -0.8 -4.9 type II secretion system protein D compare
Ga0059261_1868 -0.8 -2.1 ABC-type uncharacterized transport system, auxiliary component compare
Ga0059261_1335 -0.7 -2.6 Predicted ATPase compare
Ga0059261_1601 -0.7 -1.9 protein-(glutamine-N5) methyltransferase, release factor-specific compare
Ga0059261_1951 -0.7 -2.9 NADPH-glutathione reductase (EC 1.8.1.7) compare
Ga0059261_0290 -0.7 -3.1 3-dehydroquinate dehydratase (EC 4.2.1.10) compare
Ga0059261_0038 -0.7 -2.4 Transcriptional regulators compare
Ga0059261_0990 -0.7 -6.1 methionine synthase (B12-dependent) (EC 2.1.1.13) compare
Ga0059261_0889 -0.7 -1.7 Cold shock proteins compare
Ga0059261_0627 -0.7 -1.1 cobalamin-5'-phosphate synthase (EC 2.7.8.26) compare
Ga0059261_3114 -0.7 -4.2 hypothetical protein compare
Ga0059261_2145 -0.7 -3.2 ribosome-binding factor A compare
Ga0059261_1258 -0.7 -6.5 TonB-dependent siderophore receptor compare
Ga0059261_1565 -0.7 -5.4 cytochrome bo3 quinol oxidase subunit 1 apoprotein (EC 1.10.3.-) compare
Ga0059261_0827 -0.7 -2.0 hypothetical protein compare
Ga0059261_2076 -0.7 -1.3 hypothetical protein compare
Ga0059261_0204 -0.7 -2.7 protein RecA compare
Ga0059261_1870 -0.7 -3.0 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Ga0059261_2754 -0.7 -5.8 ABC-type branched-chain amino acid transport systems, periplasmic component compare
Ga0059261_1382 -0.7 -3.9 periplasmic serine protease, Do/DeqQ family compare
Ga0059261_3956 -0.7 -3.7 amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-) compare
Ga0059261_1605 -0.7 -3.5 transcriptional regulator, TetR family compare
Ga0059261_3609 -0.7 -2.8 Protein of unknown function (DUF2945) compare
Ga0059261_3208 -0.7 -0.9 hypothetical protein compare
Ga0059261_3341 -0.7 -3.2 ATP-dependent protease HslVU, peptidase subunit compare
Ga0059261_3097 -0.7 -3.1 Calcineurin-like phosphoesterase compare
Ga0059261_1566 -0.7 -3.9 cytochrome o ubiquinol oxidase subunit II compare
Ga0059261_1739 -0.7 -2.7 Conjugal transfer protein TraD compare
Ga0059261_0622 -0.6 -3.8 ABC-type Fe3+-hydroxamate transport system, periplasmic component compare
Ga0059261_1600 -0.6 -1.7 Domain of unknown function (DUF4167) compare
Ga0059261_0875 -0.6 -1.6 Leucyl aminopeptidase compare
Ga0059261_3896 -0.6 -2.3 integration host factor, beta subunit compare
Ga0059261_1869 -0.6 -2.7 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Ga0059261_3946 -0.6 -3.2 Type IV pilus biogenesis/PDZ domain compare
Ga0059261_3437 -0.6 -1.1 hypothetical protein compare
Ga0059261_1937 -0.6 -2.6 Protein of unknown function (DUF2807) compare
Ga0059261_4154 -0.6 -3.9 MiaB-like tRNA modifying enzyme compare
Ga0059261_2684 -0.6 -2.0 hypothetical protein compare
Ga0059261_2109 -0.6 -1.7 hypothetical protein compare
Ga0059261_2444 -0.6 -2.6 5-aminolevulinic acid synthase compare
Ga0059261_1612 -0.6 -1.0 hypothetical protein compare
Ga0059261_0991 -0.6 -3.9 Methionine synthase I (cobalamin-dependent), methyltransferase domain compare
Ga0059261_0817 -0.6 -2.9 GTP-binding protein TypA/BipA compare
Ga0059261_2088 -0.6 -1.8 Flagellar motor component compare
Ga0059261_3595 -0.6 -2.5 Site-specific recombinase XerD compare
Ga0059261_3271 -0.6 -0.9 arsenate reductase (glutaredoxin) compare
Ga0059261_1545 -0.5 -2.2 Fe2+/Zn2+ uptake regulation proteins compare
Ga0059261_2267 -0.5 -4.1 Predicted Rossmann fold nucleotide-binding protein compare
Ga0059261_0773 -0.5 -1.6 Esterase/lipase compare
Ga0059261_2547 -0.5 -0.8 tRNA compare
Ga0059261_2774 -0.5 -1.3 Transcription elongation factor compare
Ga0059261_1190 -0.5 -2.6 hypothetical protein compare
Ga0059261_3506 -0.5 -0.9 Predicted permeases compare
Ga0059261_1762 -0.5 -0.8 hypothetical protein compare
Ga0059261_2243 -0.5 -1.4 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_0197 -0.5 -0.9 hypothetical protein compare
Ga0059261_1929 -0.5 -2.2 Putative transmembrane protein (Alph_Pro_TM) compare
Ga0059261_3637 -0.5 -1.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_3493 -0.5 -2.4 hypothetical protein compare
Ga0059261_2391 -0.5 -0.8 Helix-turn-helix domain compare
Ga0059261_1872 -0.5 -2.2 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
Ga0059261_2764 -0.5 -2.2 Site-specific recombinase XerD compare
Ga0059261_3939 -0.5 -2.2 transcriptional regulator, TetR family compare
Ga0059261_0620 -0.5 -4.3 Outer membrane cobalamin receptor protein compare
Ga0059261_0781 -0.5 -1.3 hypothetical protein compare
Ga0059261_0993 -0.5 -0.8 Methylase involved in ubiquinone/menaquinone biosynthesis compare
Ga0059261_1871 -0.5 -3.6 ABC transport permease subunit compare
Ga0059261_2892 -0.5 -1.7 hypothetical protein compare
Ga0059261_2735 -0.5 -1.2 Glyoxalase-like domain compare
Ga0059261_3289 -0.5 -1.1 Predicted membrane protein compare
Ga0059261_0255 -0.5 -1.3 SurA N-terminal domain/PPIC-type PPIASE domain compare
Ga0059261_2120 -0.5 -1.8 hypothetical protein compare
Ga0059261_0834 -0.5 -2.2 hypothetical protein compare
Ga0059261_3925 -0.5 -2.4 Transcriptional regulators compare
Ga0059261_3948 -0.5 -1.6 type II secretion system protein H compare
Ga0059261_3979 -0.5 -1.6 elongation factor 4 compare
Ga0059261_2350 -0.5 -1.0 hypothetical protein compare
Ga0059261_0812 -0.5 -1.7 Short-chain alcohol dehydrogenase of unknown specificity compare
Ga0059261_0719 -0.5 -1.6 Uncharacterized protein conserved in bacteria compare
Ga0059261_4054 -0.5 -1.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_1730 -0.5 -1.6 Surface presentation of antigens (SPOA) compare
Ga0059261_2034 -0.5 -2.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_3276 -0.5 -2.8 ABC-type multidrug transport system, ATPase and permease components compare
Ga0059261_3144 -0.5 -0.9 Transcriptional regulator compare
Ga0059261_2247 -0.5 -3.0 Beta-lactamase class A compare
Ga0059261_0037 -0.5 -3.2 hypothetical protein compare
Ga0059261_0736 -0.4 -1.9 Protein of unknown function (DUF2842) compare
Ga0059261_0857 -0.4 -2.9 Phospholipid N-methyltransferase compare
Ga0059261_3371 -0.4 -1.0 hypothetical protein compare
Ga0059261_2970 -0.4 -3.1 PAS domain S-box compare
Ga0059261_1062 -0.4 -2.4 hypothetical protein compare
Ga0059261_2013 -0.4 -3.4 signal peptidase I, bacterial type compare
Ga0059261_1563 -0.4 -1.3 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) compare
Ga0059261_0159 -0.4 -2.5 Transcriptional regulator compare
Ga0059261_1257 -0.4 -2.4 Uncharacterized iron-regulated protein compare
Ga0059261_1370 -0.4 -2.3 Signal transduction histidine kinase compare
Ga0059261_2326 -0.4 -2.1 Phosphohistidine phosphatase SixA compare
Ga0059261_2418 -0.4 -1.8 lycopene cyclase compare
Ga0059261_1369 -0.4 -2.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_1547 -0.4 -2.9 Uncharacterized protein required for cytochrome oxidase assembly compare
Ga0059261_0684 -0.4 -1.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_2050 -0.4 -1.7 hypothetical protein compare
Ga0059261_3497 -0.4 -2.8 Membrane proteins related to metalloendopeptidases compare
Ga0059261_0725 -0.4 -0.8 Fructose-1,6-bisphosphate aldolase compare
Ga0059261_3127 -0.4 -2.0 hypothetical protein compare
Ga0059261_0650 -0.4 -0.9 Negative regulator of beta-lactamase expression compare
Ga0059261_3938 -0.4 -2.8 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_3339 -0.4 -2.4 ATP-dependent protease HslVU, ATPase subunit compare
Ga0059261_1768 -0.4 -1.1 Sigma-70 region 2 compare
Ga0059261_3666 -0.4 -1.7 molybdenum ABC transporter, periplasmic molybdate-binding protein compare
Ga0059261_1932 -0.4 -3.3 Peptidase family M23 compare
Ga0059261_2948 -0.4 -1.8 Putative copper export protein compare
Ga0059261_1743 -0.4 -1.3 hypothetical protein compare
Ga0059261_1021 -0.4 -1.3 hypothetical protein compare
Ga0059261_2522 -0.4 -1.8 export-related chaperone protein CsaA compare
Ga0059261_2255 -0.4 -1.6 nitrogen regulatory protein P-II family compare
Ga0059261_0852 -0.4 -2.0 Transcriptional regulators compare
Ga0059261_0084 -0.4 -1.4 hypothetical protein compare
Ga0059261_0664 -0.4 -0.8 pseudouridine synthase, RluA family compare
Ga0059261_2498 -0.4 -1.7 hypothetical protein compare
Ga0059261_2700 -0.4 -3.0 Putative Zn-dependent protease, contains TPR repeats compare
Ga0059261_2244 -0.4 -2.9 DNA polymerase I (EC 2.7.7.7) compare
Ga0059261_2124 -0.4 -2.3 hypothetical protein compare
Ga0059261_0647 -0.4 -1.6 tRNA pseudouridine(38-40) synthase compare
Ga0059261_3160 -0.4 -1.1 TolQ protein compare
Ga0059261_1003 -0.4 -2.1 hypothetical protein compare
Ga0059261_2697 -0.4 -3.3 Membrane carboxypeptidase/penicillin-binding protein compare
Ga0059261_4228 -0.4 -1.6 hypothetical protein compare
Ga0059261_3159 -0.4 -0.9 TolR protein compare
Ga0059261_3605 -0.4 -1.2 tRNA compare
Ga0059261_0060 -0.4 -1.3 Uncharacterized conserved protein compare
Ga0059261_0624 -0.4 -2.2 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components compare
Ga0059261_1847 -0.4 -1.3 hypothetical protein compare
Ga0059261_2126 -0.4 -1.5 ETC complex I subunit conserved region compare
Ga0059261_0214 -0.4 -3.1 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Ga0059261_2146 -0.4 -2.2 Glyoxalase-like domain compare
Ga0059261_2086 -0.3 -0.7 SAF-like compare
Ga0059261_3520 -0.3 -2.6 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Ga0059261_4049 -0.3 -1.7 Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs compare
Ga0059261_2481 -0.3 -1.8 Ppx/GppA phosphatase family compare
Ga0059261_3130 -0.3 -2.1 Lipid A core - O-antigen ligase and related enzymes compare
Ga0059261_3014 -0.3 -2.4 hypothetical protein compare
Ga0059261_3119 -0.3 -1.2 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_3959 -0.3 -1.4 MerC mercury resistance protein compare
Ga0059261_3406 -0.3 -2.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_3139 -0.3 -1.9 Predicted membrane protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress sodium fluoride in Sphingomonas koreensis DSMZ 15582

For stress sodium fluoride across organisms