Experiment set3IT090 for Dyella japonica UNC79MFTsu3.2

Compare to:

L-Leucine nitrogen source

200 most important genes:

  gene name fitness t score description  
ABZR86_RS10425 -7.2 -5.0 pyrroline-5-carboxylate reductase compare
ABZR86_RS12070 -6.8 -8.8 anthranilate phosphoribosyltransferase compare
ABZR86_RS06705 -6.7 -6.5 imidazole glycerol phosphate synthase subunit HisF compare
ABZR86_RS10715 -6.4 -16.0 serine hydroxymethyltransferase compare
ABZR86_RS08730 -6.3 -11.1 N-acetylornithine carbamoyltransferase compare
ABZR86_RS06630 -6.2 -4.7 phosphopyruvate hydratase compare
ABZR86_RS08700 -6.1 -7.2 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
ABZR86_RS08710 -6.0 -10.3 N-acetylcitrulline deacetylase (EC 3.5.1.-) (from data) compare
ABZR86_RS08010 -5.9 -6.6 phosphoribosylanthranilate isomerase compare
ABZR86_RS14100 -5.8 -9.7 DNA adenine methylase compare
ABZR86_RS15460 -5.6 -3.8 type I glutamate--ammonia ligase compare
ABZR86_RS06700 -5.4 -7.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABZR86_RS15980 -5.0 -4.5 homoserine kinase (EC 2.7.1.39) (from data) compare
ABZR86_RS15975 -5.0 -10.2 threonine synthase (EC 4.2.3.1) (from data) compare
ABZR86_RS08705 -4.9 -9.9 N-acetylglutamate synthase; N-acetylglutamate kinase (EC 2.3.1.1; EC 2.7.2.8) (from data) compare
ABZR86_RS12065 -4.9 -6.8 indole-3-glycerol phosphate synthase TrpC compare
ABZR86_RS06730 -4.9 -6.2 histidinol dehydrogenase compare
ABZR86_RS02220 -4.8 -16.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR86_RS15985 -4.6 -7.4 homoserine dehydrogenase compare
ABZR86_RS06725 -4.6 -9.6 histidinol-phosphate transaminase compare
ABZR86_RS08715 -4.6 -10.9 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
ABZR86_RS12005 -4.5 -3.0 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS19725 -4.4 -14.9 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR86_RS09635 -4.4 -3.7 phosphoglycerate dehydrogenase compare
ABZR86_RS12885 -4.4 -3.0 magnesium-translocating P-type ATPase compare
ABZR86_RS02815 -4.3 -14.1 asparagine synthase B compare
ABZR86_RS06260 -4.3 -5.3 MBL fold metallo-hydrolase compare
ABZR86_RS15940 -4.3 -8.2 ketol-acid reductoisomerase compare
ABZR86_RS15965 -4.2 -8.1 branched-chain amino acid transaminase compare
ABZR86_RS15935 -4.2 -13.8 biosynthetic-type acetolactate synthase large subunit compare
ABZR86_RS06710 -4.2 -5.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABZR86_RS13055 -4.2 -11.0 glucokinase compare
ABZR86_RS18615 -4.1 -4.0 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABZR86_RS13515 -4.1 -8.3 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
ABZR86_RS09885 -4.1 -2.8 trypsin-like peptidase domain-containing protein compare
ABZR86_RS15315 -4.0 -11.6 phenylalanine 4-monooxygenase compare
ABZR86_RS19865 -4.0 -4.7 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS15945 -4.0 -2.8 dihydroxy-acid dehydratase compare
ABZR86_RS06735 -3.9 -4.2 ATP phosphoribosyltransferase compare
ABZR86_RS08000 -3.9 -14.3 tryptophan synthase subunit beta compare
ABZR86_RS15640 -3.9 -2.6 orotate phosphoribosyltransferase compare
ABZR86_RS08340 -3.8 -5.4 adenylosuccinate synthase compare
ABZR86_RS18450 -3.8 -2.6 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
ABZR86_RS15515 -3.6 -4.6 nitrogen regulation protein NR(I) compare
ABZR86_RS12215 -3.6 -4.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABZR86_RS08250 -3.5 -2.6 phosphate signaling complex protein PhoU compare
ABZR86_RS07180 -3.5 -7.8 RNA polymerase sigma factor RpoE compare
ABZR86_RS12435 -3.4 -9.6 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS11555 -3.4 -10.3 phosphoenolpyruvate carboxylase compare
ABZR86_RS08685 -3.4 -4.4 glutamate 5-kinase compare
ABZR86_RS19800 -3.3 -10.3 RNase adapter RapZ compare
ABZR86_RS12780 -3.3 -3.5 pteridine reductase compare
ABZR86_RS10215 -3.3 -4.6 inositol monophosphatase family protein compare
ABZR86_RS06715 -3.3 -6.2 imidazole glycerol phosphate synthase subunit HisH compare
ABZR86_RS21575 -3.3 -6.6 [protein-PII] uridylyltransferase compare
ABZR86_RS08695 -3.0 -9.2 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
ABZR86_RS17180 -3.0 -9.3 glycosyltransferase compare
ABZR86_RS10475 -3.0 -4.6 shikimate kinase compare
ABZR86_RS05550 -3.0 -4.9 lipopolysaccharide assembly protein LapB compare
ABZR86_RS08040 -2.9 -7.5 chorismate synthase compare
ABZR86_RS08680 -2.8 -7.3 glutamate-5-semialdehyde dehydrogenase compare
ABZR86_RS14690 -2.8 -5.3 phosphogluconate dehydratase compare
ABZR86_RS06720 -2.8 -3.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABZR86_RS18705 -2.8 -2.1 pyridoxal-phosphate dependent enzyme compare
ABZR86_RS02230 -2.8 -2.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR86_RS09845 -2.8 -9.6 DUF1631 domain-containing protein compare
ABZR86_RS19860 -2.8 -8.7 phosphoribosylglycinamide formyltransferase compare
ABZR86_RS02225 -2.7 -4.9 prephenate dehydratase compare
ABZR86_RS14985 -2.7 -9.3 shikimate dehydrogenase compare
ABZR86_RS06775 -2.7 -12.6 amidophosphoribosyltransferase compare
ABZR86_RS18655 -2.6 -8.6 transketolase compare
ABZR86_RS19235 -2.5 -4.4 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS06000 -2.4 -5.4 poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABZR86_RS07995 -2.3 -7.1 tryptophan synthase subunit alpha compare
ABZR86_RS05995 -2.2 -12.0 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
ABZR86_RS08015 -2.2 -1.7 tRNA pseudouridine(38-40) synthase TruA compare
ABZR86_RS13850 -2.2 -6.2 phosphoribosylamine--glycine ligase compare
ABZR86_RS14700 -2.1 -4.1 glucose-6-phosphate dehydrogenase compare
ABZR86_RS00685 -2.1 -2.1 carbon storage regulator CsrA compare
ABZR86_RS01730 -2.1 -1.9 DUF3820 family protein compare
ABZR86_RS15025 -2.0 -4.0 tyrosine recombinase XerC compare
ABZR86_RS15970 -2.0 -2.8 2-isopropylmalate synthase compare
ABZR86_RS20775 -2.0 -3.5 TetR/AcrR family transcriptional regulator compare
ABZR86_RS17085 -1.9 -3.3 type II 3-dehydroquinate dehydratase compare
ABZR86_RS06590 -1.9 -2.0 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR86_RS09660 -1.9 -2.5 MerR family transcriptional regulator compare
ABZR86_RS20980 -1.9 -1.4 hypothetical protein compare
ABZR86_RS10205 -1.9 -5.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABZR86_RS10480 -1.9 -1.9 3-dehydroquinate synthase compare
ABZR86_RS21020 -1.8 -9.0 ATP-binding protein compare
ABZR86_RS10830 -1.8 -1.9 Holliday junction branch migration DNA helicase RuvB compare
ABZR86_RS06740 -1.7 -1.3 YerC/YecD family TrpR-related protein compare
ABZR86_RS06580 -1.7 -2.1 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS00570 -1.7 -4.9 acetoacetyl-CoA reductase compare
ABZR86_RS12410 -1.7 -2.8 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABZR86_RS18675 -1.7 -4.2 phosphoglycerate kinase compare
ABZR86_RS19815 -1.6 -8.2 RNA polymerase factor sigma-54 compare
ABZR86_RS13920 -1.6 -8.1 CDP-glycerol glycerophosphotransferase family protein compare
ABZR86_RS00390 -1.6 -4.4 3-deoxy-7-phosphoheptulonate synthase compare
ABZR86_RS10710 -1.5 -1.5 transcriptional regulator NrdR compare
ABZR86_RS00660 -1.5 -3.4 recombinase RecA compare
ABZR86_RS12790 -1.4 -2.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
ABZR86_RS02545 -1.4 -2.2 Ref family recombination enhancement nuclease compare
ABZR86_RS12605 -1.4 -3.0 thioredoxin TrxA compare
ABZR86_RS18715 -1.4 -5.8 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABZR86_RS05700 -1.4 -3.0 SsrA-binding protein SmpB compare
ABZR86_RS18490 -1.4 -1.9 low molecular weight protein-tyrosine-phosphatase compare
ABZR86_RS06270 -1.3 -3.7 glycosyltransferase family 9 protein compare
ABZR86_RS07660 -1.3 -3.1 exodeoxyribonuclease V subunit gamma compare
ABZR86_RS11655 -1.3 -4.1 SLC13 family permease compare
ABZR86_RS02310 -1.3 -1.2 hypothetical protein compare
ABZR86_RS19560 -1.3 -2.8 aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (from data) compare
ABZR86_RS03640 -1.3 -2.5 DUF488 family protein compare
ABZR86_RS05885 -1.3 -6.5 LysR substrate-binding domain-containing protein compare
ABZR86_RS05875 -1.2 -3.4 cysteine synthase A compare
ABZR86_RS19585 -1.2 -1.5 GNAT family N-acetyltransferase compare
ABZR86_RS09975 -1.2 -4.7 glycosyltransferase family 4 protein compare
ABZR86_RS18960 -1.2 -5.1 TetR/AcrR family transcriptional regulator compare
ABZR86_RS03295 -1.2 -2.8 DUF4255 domain-containing protein compare
ABZR86_RS05900 -1.2 -6.7 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABZR86_RS18730 -1.1 -5.3 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR86_RS05690 -1.1 -0.9 RnfH family protein compare
ABZR86_RS05545 -1.1 -5.8 glycosyltransferase family 4 protein compare
ABZR86_RS08905 -1.1 -6.2 carbonate dehydratase compare
ABZR86_RS12295 -1.1 -1.2 DUF2884 family protein compare
ABZR86_RS17990 -1.1 -1.5 glutathione S-transferase family protein compare
ABZR86_RS07585 -1.1 -5.8 homocysteine S-methyltransferase family protein compare
ABZR86_RS18775 -1.1 -1.5 nucleotidyltransferase family protein compare
ABZR86_RS05890 -1.1 -7.5 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase compare
ABZR86_RS10220 -1.1 -1.1 type II secretion system protein N compare
ABZR86_RS08480 -1.1 -3.6 methylisocitrate lyase compare
ABZR86_RS11570 -1.1 -6.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR86_RS08435 -1.1 -3.4 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR86_RS07665 -1.1 -2.4 exodeoxyribonuclease V subunit beta compare
ABZR86_RS22115 -1.1 -1.1 hypothetical protein compare
ABZR86_RS11580 -1.1 -6.4 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) conserved
ABZR86_RS14610 -1.1 -1.2 conjugal transfer protein TrbN compare
ABZR86_RS09280 -1.0 -6.2 amino acid permease compare
ABZR86_RS06030 -1.0 -1.0 transcription termination factor NusA compare
ABZR86_RS02320 -1.0 -1.7 hypothetical protein compare
ABZR86_RS12935 -1.0 -3.0 DUF2244 domain-containing protein compare
ABZR86_RS13915 -1.0 -6.4 glycosyltransferase family 2 protein compare
ABZR86_RS01315 -1.0 -2.7 alpha-hydroxy acid oxidase compare
ABZR86_RS10945 -1.0 -3.9 trehalose-phosphatase compare
ABZR86_RS00475 -0.9 -4.3 methionine ABC transporter ATP-binding protein compare
ABZR86_RS13905 -0.9 -5.5 glycosyltransferase family 1 protein compare
ABZR86_RS12960 -0.9 -1.0 hypothetical protein compare
ABZR86_RS10840 -0.9 -1.9 Holliday junction branch migration protein RuvA compare
ABZR86_RS05895 -0.9 -5.2 phosphoadenylyl-sulfate reductase compare
ABZR86_RS16550 -0.9 -1.9 Lrp/AsnC family transcriptional regulator compare
ABZR86_RS13910 -0.9 -6.7 glycosyltransferase compare
ABZR86_RS07590 -0.9 -6.6 methionine synthase compare
ABZR86_RS09995 -0.9 -4.3 CmcI family methyltransferase compare
ABZR86_RS03975 -0.9 -1.5 class I SAM-dependent methyltransferase compare
ABZR86_RS16405 -0.9 -5.5 ABC transporter permease compare
ABZR86_RS10530 -0.9 -0.9 H-NS histone family protein compare
ABZR86_RS17965 -0.9 -1.1 hypothetical protein compare
ABZR86_RS02450 -0.9 -1.6 hypothetical protein compare
ABZR86_RS02890 -0.9 -3.2 sulfate ABC transporter permease subunit CysW compare
ABZR86_RS05130 -0.9 -1.2 DUF6597 domain-containing transcriptional factor compare
ABZR86_RS17065 -0.9 -1.2 50S ribosomal protein L11 methyltransferase compare
ABZR86_RS06275 -0.8 -2.0 DUF6165 family protein compare
ABZR86_RS18735 -0.8 -4.1 dTDP-glucose 4,6-dehydratase compare
ABZR86_RS17905 -0.8 -2.6 DUF6229 family protein compare
ABZR86_RS13880 -0.8 -1.2 peptide deformylase compare
ABZR86_RS16040 -0.8 -0.7 molybdopterin-dependent oxidoreductase compare
ABZR86_RS00890 -0.8 -1.0 enoyl-CoA hydratase/isomerase family protein compare
ABZR86_RS11470 -0.8 -2.5 hypothetical protein compare
ABZR86_RS05335 -0.8 -1.0 hemerythrin domain-containing protein compare
ABZR86_RS10315 -0.8 -2.6 Imm42 family immunity protein compare
ABZR86_RS05540 -0.8 -3.8 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABZR86_RS06500 -0.8 -2.0 hypothetical protein compare
ABZR86_RS02900 -0.8 -5.3 MASE1 domain-containing protein compare
ABZR86_RS20435 -0.8 -1.8 hypothetical protein compare
ABZR86_RS15020 -0.8 -0.8 DUF484 family protein compare
ABZR86_RS02200 -0.8 -5.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR86_RS12280 -0.8 -1.1 dihydrolipoyl dehydrogenase compare
ABZR86_RS20605 -0.8 -1.3 FeoA family protein compare
ABZR86_RS02005 -0.8 -1.6 DUF3077 domain-containing protein compare
ABZR86_RS11825 -0.8 -1.1 citrate synthase compare
ABZR86_RS05225 -0.8 -1.0 hypothetical protein compare
ABZR86_RS11735 -0.8 -0.7 large-conductance mechanosensitive channel protein MscL compare
ABZR86_RS12350 -0.8 -0.9 glycine zipper 2TM domain-containing protein compare
ABZR86_RS19715 -0.8 -4.6 Dps family protein compare
ABZR86_RS21355 -0.8 -2.2 septum site-determining protein MinD compare
ABZR86_RS09015 -0.8 -2.7 anti-sigma factor compare
ABZR86_RS00470 -0.7 -3.8 methionine ABC transporter permease compare
ABZR86_RS11170 -0.7 -1.9 radical SAM protein compare
ABZR86_RS19795 -0.7 -2.9 PTS sugar transporter subunit IIA compare
ABZR86_RS01480 -0.7 -1.8 hypothetical protein compare
ABZR86_RS08475 -0.7 -3.4 2-methylcitrate synthase compare
ABZR86_RS13370 -0.7 -4.5 twin-arginine translocase subunit TatC compare
ABZR86_RS20075 -0.7 -1.8 flagellar basal body rod protein FlgB compare
ABZR86_RS02125 -0.7 -5.1 amidohydrolase compare
ABZR86_RS05905 -0.7 -3.2 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
ABZR86_RS19170 -0.7 -1.3 ROK family protein compare
ABZR86_RS17160 -0.7 -3.6 malonic semialdehyde reductase compare
ABZR86_RS10155 -0.7 -0.8 HAMP domain-containing sensor histidine kinase compare
ABZR86_RS06855 -0.7 -3.4 hypothetical protein compare
ABZR86_RS12200 -0.7 -2.0 ribulose-phosphate 3-epimerase compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source L-Leucine in Dyella japonica UNC79MFTsu3.2

For nitrogen source L-Leucine across organisms