Experiment set3IT090 for Caulobacter crescentus NA1000

Compare to:

PYE with Thallium(I) acetate 0.004 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CCNA_00011 +5.1 14.8 chaperone protein DnaJ compare
CCNA_01237 +3.2 2.2 hypothetical protein compare
CCNA_00190 +1.9 2.6 acyl-CoA hydrolase compare
CCNA_02000 +1.9 2.9 SSU ribosomal protein S2P compare
CCNA_01060 +1.6 5.7 type I protein secretion ATP-binding protein RsaD compare
CCNA_02252 +1.6 5.0 methylcrotonyl-CoA carboxylase carboxyl transferase subunit compare
CCNA_01061 +1.6 7.6 type I secretion adaptor protein RsaE compare
CCNA_02037 +1.5 7.8 ATP-dependent endopeptidase Lon compare
CCNA_01583 +1.5 3.0 phosphate-binding protein compare
CCNA_03384 +1.5 3.1 LSU ribosomal protein L31P compare
CCNA_03078 +1.5 1.8 Arc/MetJ-family transcriptional regulator compare
CCNA_01059 +1.4 9.2 S-layer protein rsaA compare
CCNA_00684 +1.4 8.0 anti-sigma factor, ChrR-family compare
CCNA_01712 +1.4 11.4 CopY/TcrY family transcriptional repressor compare
CCNA_R0054 +1.3 3.0 tRNA-Gly compare
CCNA_01361 +1.3 3.7 PepSY superfamily protein compare
CCNA_00852 +1.3 4.7 TetR family transcriptional regulator compare
CCNA_01324 +1.3 4.1 LSU ribosomal protein L30P compare
CCNA_01525 +1.3 8.5 flagellar biosynthesis repressor flbT compare
CCNA_02387 +1.3 10.4 glutathione reductase compare
CCNA_01058 +1.3 5.2 helix-turn-helix transcriptional regulator compare
CCNA_03635 +1.3 1.7 hypothetical protein compare
CCNA_02026 +1.3 6.7 hypothetical protein compare
CCNA_02075 +1.3 1.7 peptidoglycan binding endopeptidase DipM compare
CCNA_01174 +1.2 4.7 LysR-family transcriptional regulator compare
CCNA_01815 +1.2 7.8 nitrogen assimilation regulatory protein NtrC compare
CCNA_02957 +1.2 5.2 ArsR-family transcriptional regulator compare
CCNA_01756 +1.2 0.9 hypothetical protein compare
CCNA_03705 +1.2 3.2 hypothetical protein compare
CCNA_00257 +1.2 5.2 adenosylhomocysteinase compare
CCNA_03379 +1.2 3.2 Cro/CI family transcriptional regulator compare
CCNA_02225 +1.1 7.6 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_03281 +1.1 8.6 AsnC-family transcriptional regulator compare
CCNA_01751 +1.1 5.5 aminodeoxychorismate lyase compare
CCNA_02126 +1.1 1.4 hypothetical protein compare
CCNA_01959 +1.1 3.9 3-dehydroquinate dehydratase compare
CCNA_02133 +1.1 5.3 glucokinase compare
CCNA_03959 +1.1 2.1 hypothetical protein compare
CCNA_02030 +1.1 5.0 hypothetical protein compare
CCNA_03287 +1.1 7.4 PadR-family transcriptional regulator compare
CCNA_01573 +1.1 6.3 ArsR-family transcriptional regulator compare
CCNA_02132 +1.1 3.9 LacI-family transcriptional regulator compare
CCNA_03043 +1.1 4.3 type IV pilin protein pilA compare
CCNA_01979 +1.1 6.4 LexA repressor compare
CCNA_02289 +1.1 6.7 MarR/EmrR family transcriptional regulator compare
CCNA_02103 +1.1 6.4 hypothetical protein compare
CCNA_02878 +1.1 0.9 hypothetical protein compare
CCNA_00161 +1.0 5.4 hypothetical protein compare
CCNA_01814 +1.0 8.1 nitrogen regulation protein ntrB compare
CCNA_01593 +1.0 6.5 Xaa-pro aminopeptidase compare
CCNA_00518 +1.0 4.8 LSU ribosomal protein L25P compare
CCNA_03252 +1.0 8.4 CopY/TcrY-family transcriptional regulator compare
CCNA_01774 +1.0 1.4 phosphoribosylglycinamide formyltransferase compare
CCNA_02254 +1.0 3.9 isovaleryl-CoA dehydrogenase compare
CCNA_03824 +1.0 5.5 2-polyprenylphenol 6-hydroxylase accessory protein UbiB compare
CCNA_01973 +1.0 1.7 hypothetical protein compare
CCNA_03970 +1.0 2.4 hypothetical protein compare
CCNA_01684 +1.0 6.3 phenylalanine-4-hydroxylase compare
CCNA_00924 +1.0 6.3 MarR/EmrR family transcriptional regulator compare
CCNA_02328 +1.0 1.3 cell cycle regulatory protein GcrA compare
CCNA_01526 +1.0 4.9 flagellar biosynthesis regulatory protein flaF compare
CCNA_02042 +1.0 7.1 trigger factor chaperone compare
CCNA_02242 +1.0 7.2 PHB granule-associated protein, phasin2 compare
CCNA_01851 +1.0 8.1 quinol cytochrome oxidase polypeptide II compare
CCNA_02841 +0.9 2.7 hypothetical protein compare
CCNA_03072 +0.9 3.7 TetR-family transcriptional regulator compare
CCNA_00699 +0.9 4.1 LSU ribosomal protein L28P compare
CCNA_02025 +0.9 4.9 hypothetical protein compare
CCNA_00296 +0.9 3.3 phosphate regulon response regulator PhoB compare
CCNA_03064 +0.9 7.2 PadR-family transcriptional regulator compare
CCNA_01220 +0.9 4.7 7-keto-8-aminopelargonate synthetase compare
CCNA_02021 +0.9 3.8 hypothetical protein compare
CCNA_03475 +0.9 3.2 homoserine kinase compare
CCNA_02315 +0.9 2.6 Cro/CI-family transcriptional regulator compare
CCNA_03938 +0.9 3.7 hypothetical protein compare
CCNA_01497 +0.9 1.6 ADP-L-glycero-D-manno-heptose-6-epimerase compare
CCNA_01242 +0.9 7.4 amino acid permease compare
CCNA_01968 +0.9 3.5 pentapeptide repeats containing protein compare
CCNA_00848 +0.9 1.9 leucine-responsive regulatory protein compare
CCNA_03524 +0.9 4.1 di-/tripeptide transporter compare
CCNA_03289 +0.9 5.0 HicB-family RNA-binding protein compare
CCNA_02012 +0.9 5.5 metal-dependent hydrolase compare
CCNA_03598 +0.9 1.7 two-component sensor histidine kinase DivL compare
CCNA_00962 +0.9 4.9 MarR-family transcriptional regulator compare
CCNA_02448 +0.9 6.4 hypothetical protein compare
CCNA_03136 +0.9 4.1 flagellar export protein FliJ compare
CCNA_01775 +0.9 3.9 phosphoribosylformylglycinamidine cyclo-ligase compare
CCNA_03464 +0.9 3.6 glycine cleavage system H protein compare
CCNA_02447 +0.9 6.2 PspA/IM30 family regulatory protein compare
CCNA_01094 +0.9 2.8 hypothetical protein compare
CCNA_02980 +0.9 7.1 tryptophan 2,3-dioxygenase compare
CCNA_01913 +0.9 6.3 MarR-family transcriptional regulator compare
CCNA_00281 +0.9 1.1 methionyl-tRNA formyltransferase compare
CCNA_02241 +0.9 3.3 endoribonuclease L-PSP compare
CCNA_00162 +0.9 5.3 hypothetical protein compare
CCNA_03354 +0.9 3.3 5-formyltetrahydrofolate cyclo-ligase compare
CCNA_01420 +0.9 3.6 NrdR family transcriptional regulator compare
CCNA_01093 +0.9 2.2 hypothetical protein compare
CCNA_00939 +0.9 4.7 MarR-family transcriptional regulator compare
CCNA_03858 +0.9 6.6 protein translocase subunit secB compare
CCNA_00392 +0.9 5.4 dihydroorotase compare
CCNA_01447 +0.9 4.3 homoserine dehydrogenase compare
CCNA_01739 +0.9 4.2 LSU ribosomal protein L9P compare
CCNA_00080 +0.8 1.0 LexA-related transcriptional repressor compare
CCNA_00206 +0.8 3.0 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A compare
CCNA_02942 +0.8 2.7 nucleoside-diphosphate-sugar epimerase compare
CCNA_03633 +0.8 0.7 GIY-YIG domain protein compare
CCNA_02910 +0.8 7.5 TonB-dependent receptor compare
CCNA_03909 +0.8 3.1 hypothetical protein compare
CCNA_03961 +0.8 3.2 hypothetical protein compare
CCNA_02081 +0.8 4.1 Sec-independent protein translocase protein tatB compare
CCNA_01840 +0.8 6.9 MerR-family transcriptional regulator compare
CCNA_02156 +0.8 5.9 hypothetical protein compare
CCNA_02698 +0.8 6.0 Inosine-uridine nucleoside N-ribohydrolase compare
CCNA_01801 +0.8 4.1 hypothetical protein compare
CCNA_00521 +0.8 1.9 antitoxin protein compare
CCNA_02368 +0.8 6.4 alpha-glucosidase compare
CCNA_02732 +0.8 1.7 hypothetical protein compare
CCNA_02913 +0.8 4.2 hypothetical protein compare
CCNA_03012 +0.8 4.9 peroxiredoxin compare
CCNA_03325 +0.8 4.4 hypothetical protein compare
CCNA_01624 +0.8 2.8 orotate phosphoribosyltransferase compare
CCNA_03951 +0.8 3.6 hypothetical protein compare
CCNA_02316 +0.8 5.0 hypothetical protein compare
CCNA_03612 +0.8 5.9 HTH XRE-family transcriptional regulator compare
CCNA_01931 +0.8 5.9 TetR-family transcriptional regulator compare
CCNA_00756 +0.8 2.5 hypothetical protein compare
CCNA_00767 +0.8 1.3 hypothetical protein compare
CCNA_01622 +0.8 3.2 Rsh ppGpp hydrolase-synthetase compare
CCNA_00846 +0.8 7.1 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_01001 +0.8 3.6 ribokinase compare
CCNA_R0037 +0.8 2.1 tRNA-Glu compare
CCNA_01571 +0.8 2.7 arsenate reductase compare
CCNA_00920 +0.8 3.9 hypothetical protein compare
CCNA_03944 +0.8 1.1 hypothetical protein compare
CCNA_02467 +0.8 5.4 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_03062 +0.8 5.7 cell wall hydrolase family protein compare
CCNA_01453 +0.8 3.5 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_01804 +0.8 5.3 glutathione peroxidase compare
CCNA_00207 +0.7 4.6 succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B compare
CCNA_03271 +0.7 6.4 methionine gamma-lyase compare
CCNA_00350 +0.7 0.8 hypothetical protein compare
CCNA_01790 +0.7 4.2 protein translocase subunit secG compare
CCNA_02619 +0.7 5.3 stomatin/prohibitin-related protein compare
CCNA_00422 +0.7 3.2 SDR pteridine reductase compare
CCNA_03108 +0.7 6.4 TonB-dependent outer membrane receptor compare
CCNA_R0010 +0.7 0.8 tRNA-Arg compare
CCNA_02551 +0.7 3.1 hypothetical protein compare
CCNA_02171 +0.7 5.7 nucleoside permease nupC compare
CCNA_02617 +0.7 6.3 histidinol-phosphate aminotransferase compare
CCNA_00971 +0.7 3.0 hydroxyacylglutathione hydrolase compare
CCNA_00264 +0.7 4.4 C4-dicarboxylate transport protein compare
CCNA_00362 +0.7 2.5 zinc uptake regulation protein compare
CCNA_01781 +0.7 2.3 hypothetical protein compare
CCNA_03322 +0.7 5.3 D-3-phosphoglycerate dehydrogenase compare
CCNA_03498 +0.7 4.3 MarR-family transcriptional regulator compare
CCNA_00954 +0.7 5.8 AAA-family response regulator flbD compare
CCNA_00945 +0.7 5.0 chemotaxis protein MotD compare
CCNA_00505 +0.7 3.7 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_02073 +0.7 4.0 cupin domain transcriptional regulator compare
CCNA_02644 +0.7 1.7 cell division protein FtsL compare
CCNA_02960 +0.7 1.4 HTH DNA-binding protein compare
CCNA_00224 +0.7 5.6 TonB-dependent receptor protein compare
CCNA_02335 +0.7 2.8 inositol monophosphatase family protein compare
CCNA_00163 +0.7 5.4 exopolysaccharide transport family protein compare
CCNA_01179 +0.7 2.9 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase compare
CCNA_03689 +0.7 5.9 alanine dehydrogenase compare
CCNA_03131 +0.7 2.3 LytR/AlgR-family transcriptional regulator compare
CCNA_03948 +0.7 0.5 hypothetical protein compare
CCNA_00368 +0.7 4.4 phosphonates transport system permease protein phnE compare
CCNA_01728 +0.7 4.5 short chain dehydrogenase compare
CCNA_03989 +0.7 5.9 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_01690 +0.7 2.7 MAPEG family membrane protein compare
CCNA_01392 +0.7 2.8 glycosyltransferase involved in cell wall biogenesis compare
CCNA_01942 +0.7 4.4 Rrf2 family protein compare
CCNA_03479 +0.7 4.8 MarR-family transcriptional regulator compare
CCNA_00769 +0.7 4.5 TetR family transcriptional regulator compare
CCNA_01923 +0.7 4.6 ATP-dependent RNA helicase compare
CCNA_00354 +0.7 5.3 NlpC/P60 CHAP domain amidase protein compare
CCNA_00527 +0.7 4.8 hypothetical protein compare
CCNA_01826 +0.7 4.1 vitamin B12 receptor compare
CCNA_03030 +0.7 2.5 cytochrome c2 compare
CCNA_00766 +0.7 4.2 cobalamin adenosyltransferase family protein compare
CCNA_02270 +0.7 1.8 MarR-family transcriptional regulator compare
CCNA_00892 +0.7 2.5 phosphoenolpyruvate-protein phosphotransferase PtsP compare
CCNA_03123 +0.7 4.0 ArsR-family transcriptional regulator compare
CCNA_01193 +0.7 5.6 amylosucrase compare
CCNA_02067 +0.7 3.7 conserved membrane spanning protein compare
CCNA_00950 +0.7 5.3 flagellar M-ring protein FliF compare
CCNA_00999 +0.7 3.1 PAS-family motility and cell cycle regulatory protein MopJ compare
CCNA_02416 +0.7 3.8 DNA-binding protein HU compare
CCNA_03519 +0.7 3.1 PadR-family transcriptional regulator compare
CCNA_01249 +0.7 3.0 ABC-transporter substrate binding protein compare
CCNA_00522 +0.7 2.2 BrnT-related ribonuclease toxin compare
CCNA_01679 +0.7 3.8 succinylglutamic semialdehyde dehydrogenase compare
CCNA_02134 +0.7 5.5 phosphogluconate dehydratase compare
CCNA_01655 +0.7 3.9 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_01219 +0.7 1.4 putative cytosolic protein compare
CCNA_00153 +0.7 1.7 adenine nucleotide exchange factor GrpE compare
CCNA_03805 +0.7 4.8 PadR-family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 in stress experiments

For stress Thallium(I) acetate across organisms