Experiment set3IT089 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Xantho_MME_glucose_casamino

200 most important genes:

  gene name fitness t score description  
Xcc-8004.2011.1 -5.9 -4.1 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.5192.1 -5.3 -14.2 hypothetical protein compare
Xcc-8004.5193.1 -4.9 -24.7 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.659.1 -4.3 -4.2 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.4481.1 -4.3 -9.8 hypothetical protein compare
Xcc-8004.271.1 -4.3 -5.0 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.601.1 -4.1 -11.2 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.657.1 -3.5 -9.6 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.2012.1 -3.5 -9.3 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.2086.1 -3.4 -3.0 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.4439.1 -3.1 -12.5 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.1676.1 -3.1 -9.2 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.623.1 -2.9 -3.7 Phosphoserine phosphatase compare
Xcc-8004.4112.1 -2.9 -5.9 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.4732.1 -2.9 -3.3 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.4073.1 -2.8 -11.1 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.2406.1 -2.7 -10.3 Manganese transport protein MntH compare
Xcc-8004.2217.1 -2.6 -4.6 FIG01209779: hypothetical protein compare
Xcc-8004.1436.1 -2.2 -2.6 Holliday junction DNA helicase RuvA compare
Xcc-8004.3324.1 -2.1 -3.7 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.4364.1 -2.1 -7.4 Cell division protein MraZ compare
Xcc-8004.2449.1 -2.0 -4.8 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.505.1 -1.9 -9.1 Biotin synthase (EC 2.8.1.6) compare
Xcc-8004.3595.1 -1.9 -2.0 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Xcc-8004.1615.1 -1.8 -2.7 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.1196.1 -1.8 -6.8 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.270.1 -1.7 -6.6 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.846.1 -1.7 -3.8 Protein of unknown function DUF484 compare
Xcc-8004.130.1 -1.6 -7.3 hypothetical protein compare
Xcc-8004.3130.1 -1.6 -6.1 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Xcc-8004.3726.1 -1.6 -2.8 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.2450.1 -1.6 -10.2 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Xcc-8004.4539.1 -1.5 -7.1 Oligopeptidase A (EC 3.4.24.70) compare
Xcc-8004.1027.1 -1.5 -1.8 Two-component system sensor protein compare
Xcc-8004.5363.1 -1.4 -3.3 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Xcc-8004.2019.1 -1.3 -7.5 Decarboxylase family protein compare
Xcc-8004.2922.1 -1.3 -1.9 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.1372.1 -1.3 -2.9 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.2401.1 -1.3 -2.0 FIG00545367: hypothetical protein compare
Xcc-8004.2495.1 -1.2 -2.5 hypothetical protein compare
Xcc-8004.4824.1 -1.2 -8.3 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.4398.1 -1.2 -5.7 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.3875.1 -1.1 -0.9 FIG01212144: hypothetical protein compare
Xcc-8004.5252.1 -1.1 -5.1 FIG01210658: hypothetical protein compare
Xcc-8004.2259.1 -1.1 -3.4 PhbF compare
Xcc-8004.2343.1 -1.1 -2.0 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.3576.1 -1.1 -5.3 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.3244.1 -1.1 -2.1 DNA repair protein RadC compare
Xcc-8004.2574.1 -1.1 -1.6 FIG004780: hypothetical protein in PFGI-1-like cluster compare
Xcc-8004.1414.1 -1.0 -1.1 Lactoylglutathione lyase and related lyases compare
Xcc-8004.914.1 -1.0 -4.6 tail-specific protease compare
Xcc-8004.5343.1 -1.0 -5.6 hypothetical protein compare
Xcc-8004.4948.1 -1.0 -1.1 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.1858.1 -1.0 -1.0 FIG01211170: hypothetical protein compare
Xcc-8004.4510.1 -1.0 -1.6 ATP binding component of ABC-transporter compare
Xcc-8004.2839.1 -1.0 -1.2 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Xcc-8004.1890.1 -1.0 -3.6 hypothetical protein compare
Xcc-8004.3728.1 -0.9 -1.7 hypothetical protein compare
Xcc-8004.3054.1 -0.9 -1.7 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.3898.1 -0.9 -1.2 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.1809.1 -0.9 -1.4 extracellular serine protease compare
Xcc-8004.3955.1 -0.9 -3.8 HflK protein compare
Xcc-8004.3473.1 -0.9 -2.0 FIG01213437: hypothetical protein compare
Xcc-8004.2887.1 -0.9 -2.3 Chemotaxis protein CheD compare
Xcc-8004.2055.1 -0.9 -1.5 Mobile element protein compare
Xcc-8004.4480.1 -0.9 -5.7 Phosphomannomutase (EC 5.4.2.8) compare
Xcc-8004.1019.1 -0.9 -3.0 hypothetical protein compare
Xcc-8004.4836.1 -0.9 -3.3 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.1365.1 -0.9 -1.5 FIG01211058: hypothetical protein compare
Xcc-8004.3792.1 -0.9 -1.4 Mobile element protein compare
Xcc-8004.1064.1 -0.9 -1.6 hypothetical protein compare
Xcc-8004.1790.1 -0.9 -2.0 Zinc uptake regulation protein ZUR compare
Xcc-8004.3954.1 -0.9 -3.7 HflC protein compare
Xcc-8004.4210.1 -0.9 -4.4 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.5352.1 -0.9 -2.1 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.1521.1 -0.9 -1.9 FIG01209895: hypothetical protein compare
Xcc-8004.713.1 -0.8 -1.5 FIG01210186: hypothetical protein compare
Xcc-8004.950.1 -0.8 -1.5 General secretion pathway protein L compare
Xcc-8004.3731.1 -0.8 -1.6 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) compare
Xcc-8004.3108.1 -0.8 -1.9 Regulatory protein RecX compare
Xcc-8004.1157.1 -0.8 -2.9 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
Xcc-8004.1086.1 -0.8 -1.0 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.502.1 -0.8 -2.3 Biotin synthesis protein BioH compare
Xcc-8004.5132.1 -0.8 -3.3 Heavy metal RND efflux outer membrane protein, CzcC family compare
Xcc-8004.4814.1 -0.8 -2.5 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Xcc-8004.3072.1 -0.8 -1.8 hypothetical protein compare
Xcc-8004.2387.1 -0.8 -1.4 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.4693.1 -0.8 -2.1 hypothetical protein compare
Xcc-8004.1610.1 -0.8 -2.1 MFS transporter compare
Xcc-8004.3131.1 -0.8 -2.9 hypothetical protein compare
Xcc-8004.3360.1 -0.8 -3.0 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Xcc-8004.638.1 -0.8 -4.9 Bacterioferritin compare
Xcc-8004.1720.1 -0.8 -1.3 UPF0301 protein YqgE compare
Xcc-8004.4069.1 -0.8 -2.3 FIG01211525: hypothetical protein compare
Xcc-8004.3859.1 -0.8 -2.3 Two-component system regulatory protein compare
Xcc-8004.5168.1 -0.8 -1.1 hypothetical protein compare
Xcc-8004.4231.1 -0.8 -1.1 two-component system regulatory protein compare
Xcc-8004.3310.1 -0.8 -2.8 Chromosome partition protein smc compare
Xcc-8004.2337.1 -0.8 -2.7 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.3815.1 -0.8 -1.3 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.3154.1 -0.7 -2.1 Probable low-affinity inorganic phosphate transporter compare
Xcc-8004.2074.1 -0.7 -2.3 Transcriptional regulator, MerR family compare
Xcc-8004.1362.1 -0.7 -2.5 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
Xcc-8004.1336.1 -0.7 -3.6 two-component system sensor protein compare
Xcc-8004.1366.1 -0.7 -2.2 hypothetical protein compare
Xcc-8004.27.1 -0.7 -1.0 hypothetical protein compare
Xcc-8004.2561.1 -0.7 -3.4 FIG01213638: hypothetical protein compare
Xcc-8004.2322.1 -0.7 -2.9 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
Xcc-8004.4105.1 -0.7 -1.3 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) compare
Xcc-8004.4322.1 -0.7 -1.5 nucleoprotein/polynucleotide-associated enzyme compare
Xcc-8004.4698.1 -0.7 -2.5 Methyl-accepting chemotaxis protein compare
Xcc-8004.3647.1 -0.7 -2.3 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.4477.1 -0.7 -1.6 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.3401.1 -0.7 -0.7 FIG01209914: hypothetical protein compare
Xcc-8004.2644.1 -0.7 -1.7 hypothetical protein compare
Xcc-8004.2168.1 -0.7 -2.3 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.3041.1 -0.7 -2.1 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.4381.1 -0.7 -2.1 Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
Xcc-8004.488.1 -0.7 -4.2 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
Xcc-8004.3222.1 -0.7 -1.0 Mobile element protein compare
Xcc-8004.2234.1 -0.6 -2.8 FIG01210056: hypothetical protein compare
Xcc-8004.1162.1 -0.6 -1.9 FIG01210644: hypothetical protein compare
Xcc-8004.2105.1 -0.6 -3.1 FIG01210123: hypothetical protein compare
Xcc-8004.1007.1 -0.6 -0.8 acetylxylan esterase compare
Xcc-8004.3979.1 -0.6 -3.3 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.4530.1 -0.6 -2.5 Dethiobiotin synthetase (EC 6.3.3.3) compare
Xcc-8004.1931.1 -0.6 -1.8 FIG01209787: hypothetical protein compare
Xcc-8004.2694.1 -0.6 -2.5 hypothetical protein compare
Xcc-8004.4000.1 -0.6 -1.9 COG1399 protein, clustered with ribosomal protein L32p compare
Xcc-8004.3020.1 -0.6 -2.9 hypothetical protein compare
Xcc-8004.361.1 -0.6 -1.8 FIG023937: hypothetical protein in ureide degradation cluster compare
Xcc-8004.777.1 -0.6 -2.4 FIG01211805: hypothetical protein compare
Xcc-8004.5130.1 -0.6 -2.5 hypothetical protein compare
Xcc-8004.3498.1 -0.6 -1.0 hypothetical protein compare
Xcc-8004.715.1 -0.6 -2.1 RNA polymerase sigma factor compare
Xcc-8004.1630.1 -0.6 -1.6 hypothetical protein compare
Xcc-8004.574.1 -0.6 -3.2 Di-/tripeptide transporter compare
Xcc-8004.1873.1 -0.6 -1.8 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.3304.1 -0.6 -0.9 FIG01211108: hypothetical protein compare
Xcc-8004.2623.1 -0.6 -3.6 phage-related protein compare
Xcc-8004.3327.1 -0.6 -2.9 Kynureninase (EC 3.7.1.3) compare
Xcc-8004.279.1 -0.6 -2.6 FIG01210420: hypothetical protein compare
Xcc-8004.3365.1 -0.6 -1.8 FIG01209831: hypothetical protein compare
Xcc-8004.1264.1 -0.6 -2.2 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.1226.1 -0.6 -1.4 FIG01210021: hypothetical protein compare
Xcc-8004.5100.1 -0.6 -1.2 FIG01211066: hypothetical protein compare
Xcc-8004.1962.1 -0.6 -1.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Xcc-8004.2544.1 -0.6 -1.8 FIG01210735: hypothetical protein compare
Xcc-8004.4501.1 -0.6 -2.3 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Xcc-8004.898.1 -0.6 -1.6 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4046.1 -0.6 -3.6 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.2320.1 -0.6 -2.1 Acetylglutamate kinase (EC 2.7.2.8) compare
Xcc-8004.924.1 -0.6 -1.7 FIG01200701: possible membrane protein compare
Xcc-8004.2358.1 -0.6 -3.0 Segregation and condensation protein A compare
Xcc-8004.337.1 -0.6 -1.6 ATPase, AFG1 family compare
Xcc-8004.1848.1 -0.6 -1.4 Ribonuclease E inhibitor RraA compare
Xcc-8004.1409.1 -0.6 -1.8 Cation:proton antiporter compare
Xcc-8004.5369.1 -0.6 -3.3 Lipoprotein compare
Xcc-8004.3982.1 -0.6 -2.9 Propionate catabolism operon regulatory protein PrpR compare
Xcc-8004.2673.1 -0.6 -1.8 FIG01211365: hypothetical protein compare
Xcc-8004.2958.1 -0.6 -1.1 tryptophan-rich sensory protein compare
Xcc-8004.764.1 -0.6 -1.7 FIG01213873: hypothetical protein compare
Xcc-8004.4947.1 -0.6 -1.4 Histone H1 compare
Xcc-8004.1512.1 -0.6 -1.4 RNA polymerase sigma-70 factor compare
Xcc-8004.3133.1 -0.6 -2.1 ortholog of Bordetella pertussis (BX470248) BP2475 compare
Xcc-8004.1900.1 -0.6 -1.3 Acyl-CoA thioester hydrolase compare
Xcc-8004.2131.1 -0.6 -1.5 Predicted 4-hydroxyproline dipeptidase compare
Xcc-8004.1522.1 -0.6 -2.2 Putative predicted metal-dependent hydrolase compare
Xcc-8004.4013.1 -0.5 -0.8 FIG000557: hypothetical protein co-occurring with RecR compare
Xcc-8004.4699.1 -0.5 -1.2 Flagellar motor protein compare
Xcc-8004.2936.1 -0.5 -3.9 Amino acid transporters compare
Xcc-8004.3882.1 -0.5 -1.1 hypothetical protein compare
Xcc-8004.1657.1 -0.5 -0.8 PTS system, mannose-specific IIA component compare
Xcc-8004.3346.1 -0.5 -1.5 hypothetical protein compare
Xcc-8004.1714.1 -0.5 -1.9 Twitching motility protein PilT compare
Xcc-8004.3831.1 -0.5 -2.7 4-hydroxybenzoyl-CoA thioesterase (EC 3.1.2.23) compare
Xcc-8004.3137.1 -0.5 -2.2 tRNA pseudouridine 13 synthase (EC 4.2.1.-) compare
Xcc-8004.2372.1 -0.5 -2.4 Pheromone shutdown protein compare
Xcc-8004.2309.1 -0.5 -1.9 FIG01214780: hypothetical protein compare
Xcc-8004.5171.1 -0.5 -1.9 Transcriptional regulator, IclR family compare
Xcc-8004.1768.1 -0.5 -1.1 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.5321.1 -0.5 -2.2 FIG01213140: hypothetical protein compare
Xcc-8004.1151.1 -0.5 -2.6 Beta-lactamase compare
Xcc-8004.2239.1 -0.5 -0.8 Positive regulator of CheA protein activity (CheW) compare
Xcc-8004.344.1 -0.5 -2.0 FIG01211436: hypothetical protein compare
Xcc-8004.1770.1 -0.5 -1.4 hypothetical protein compare
Xcc-8004.1396.1 -0.5 -1.8 L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) / Cobyric acid synthase (EC 6.3.5.10) compare
Xcc-8004.4635.1 -0.5 -1.5 hypothetical protein compare
Xcc-8004.5221.1 -0.5 -2.7 D-mannonate oxidoreductase (EC 1.1.1.57) compare
Xcc-8004.4224.1 -0.5 -2.1 Hydrogen peroxide-inducible genes activator compare
Xcc-8004.4086.1 -0.5 -3.2 Sulfate transport system permease protein CysT compare
Xcc-8004.955.1 -0.5 -2.1 Predicted transcriptional regulator of N-Acetylglucosamine utilization, LacI family compare
Xcc-8004.3803.1 -0.5 -1.1 hypothetical protein compare
Xcc-8004.629.1 -0.5 -1.5 hypothetical protein compare
Xcc-8004.2314.1 -0.5 -3.2 FIG01209975: hypothetical protein compare
Xcc-8004.4945.1 -0.5 -0.7 FIG01210349: hypothetical protein compare
Xcc-8004.1204.1 -0.5 -1.4 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Xcc-8004.2654.1 -0.5 -2.3 FIG026426: Hypothetical protein compare
Xcc-8004.3031.1 -0.5 -2.0 Methyltransferase (EC 2.1.1.-) compare
Xcc-8004.3676.1 -0.5 -1.2 Translation elongation factor LepA compare


Specific Phenotypes

For 1 genes in this experiment