Experiment set3IT089 for Dyella japonica UNC79MFTsu3.2

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L-Isoleucine nitrogen source

200 most important genes:

  gene name fitness t score description  
ABZR86_RS14100 -6.0 -10.1 DNA adenine methylase compare
ABZR86_RS15460 -5.7 -3.9 type I glutamate--ammonia ligase compare
ABZR86_RS19725 -5.2 -16.7 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR86_RS10215 -4.9 -8.5 inositol monophosphatase family protein compare
ABZR86_RS10715 -4.8 -13.2 serine hydroxymethyltransferase compare
ABZR86_RS12005 -4.6 -2.9 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS19025 -4.6 -4.6 homoserine O-succinyltransferase compare
ABZR86_RS18655 -4.6 -7.7 transketolase compare
ABZR86_RS10425 -4.6 -4.0 pyrroline-5-carboxylate reductase compare
ABZR86_RS02220 -4.5 -15.1 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR86_RS08700 -4.5 -7.3 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
ABZR86_RS12885 -4.5 -3.1 magnesium-translocating P-type ATPase compare
ABZR86_RS02230 -4.4 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR86_RS08730 -4.3 -8.0 N-acetylornithine carbamoyltransferase compare
ABZR86_RS09885 -4.2 -2.9 trypsin-like peptidase domain-containing protein compare
ABZR86_RS08000 -4.1 -15.2 tryptophan synthase subunit beta compare
ABZR86_RS15640 -4.0 -2.8 orotate phosphoribosyltransferase compare
ABZR86_RS19235 -3.9 -3.8 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS05875 -3.9 -5.5 cysteine synthase A compare
ABZR86_RS07665 -3.8 -5.3 exodeoxyribonuclease V subunit beta compare
ABZR86_RS02815 -3.8 -13.8 asparagine synthase B compare
ABZR86_RS06630 -3.7 -3.4 phosphopyruvate hydratase compare
ABZR86_RS17180 -3.6 -9.6 glycosyltransferase compare
ABZR86_RS11570 -3.6 -8.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR86_RS06720 -3.5 -4.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABZR86_RS09635 -3.5 -5.1 phosphoglycerate dehydrogenase compare
ABZR86_RS12435 -3.5 -10.4 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS08040 -3.5 -7.5 chorismate synthase compare
ABZR86_RS10475 -3.4 -4.9 shikimate kinase compare
ABZR86_RS02225 -3.4 -6.1 prephenate dehydratase compare
ABZR86_RS12070 -3.4 -6.4 anthranilate phosphoribosyltransferase compare
ABZR86_RS14985 -3.3 -9.6 shikimate dehydrogenase compare
ABZR86_RS06705 -3.3 -3.9 imidazole glycerol phosphate synthase subunit HisF compare
ABZR86_RS12215 -3.3 -5.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABZR86_RS06700 -3.2 -7.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABZR86_RS08010 -3.2 -5.9 phosphoribosylanthranilate isomerase compare
ABZR86_RS17085 -3.2 -6.6 type II 3-dehydroquinate dehydratase compare
ABZR86_RS09075 -3.1 -1.7 NrsF family protein compare
ABZR86_RS08340 -3.1 -4.9 adenylosuccinate synthase compare
ABZR86_RS12065 -3.1 -6.2 indole-3-glycerol phosphate synthase TrpC compare
ABZR86_RS19030 -3.1 -5.6 cystathionine gamma-synthase compare
ABZR86_RS11555 -3.1 -8.9 phosphoenolpyruvate carboxylase compare
ABZR86_RS09845 -2.9 -8.4 DUF1631 domain-containing protein compare
ABZR86_RS08705 -2.9 -7.5 N-acetylglutamate synthase; N-acetylglutamate kinase (EC 2.3.1.1; EC 2.7.2.8) (from data) compare
ABZR86_RS08710 -2.9 -6.6 N-acetylcitrulline deacetylase (EC 3.5.1.-) (from data) compare
ABZR86_RS10480 -2.9 -2.5 3-dehydroquinate synthase compare
ABZR86_RS12180 -2.8 -13.8 anthranilate synthase component I compare
ABZR86_RS10205 -2.8 -4.8 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABZR86_RS06725 -2.8 -6.4 histidinol-phosphate transaminase compare
ABZR86_RS06715 -2.8 -6.7 imidazole glycerol phosphate synthase subunit HisH compare
ABZR86_RS06260 -2.7 -4.9 MBL fold metallo-hydrolase compare
ABZR86_RS07180 -2.7 -6.0 RNA polymerase sigma factor RpoE compare
ABZR86_RS05690 -2.6 -1.4 RnfH family protein compare
ABZR86_RS06710 -2.6 -5.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABZR86_RS06730 -2.6 -6.2 histidinol dehydrogenase compare
ABZR86_RS15315 -2.6 -8.6 phenylalanine 4-monooxygenase compare
ABZR86_RS19560 -2.6 -4.0 aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (from data) compare
ABZR86_RS08715 -2.6 -9.3 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
ABZR86_RS15975 -2.6 -8.8 threonine synthase (EC 4.2.3.1) (from data) compare
ABZR86_RS19865 -2.5 -4.7 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS12780 -2.5 -4.2 pteridine reductase compare
ABZR86_RS05885 -2.5 -6.9 LysR substrate-binding domain-containing protein compare
ABZR86_RS06735 -2.5 -3.5 ATP phosphoribosyltransferase compare
ABZR86_RS06000 -2.5 -7.8 poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABZR86_RS13880 -2.4 -3.1 peptide deformylase compare
ABZR86_RS08250 -2.4 -1.2 phosphate signaling complex protein PhoU compare
ABZR86_RS06775 -2.3 -11.3 amidophosphoribosyltransferase compare
ABZR86_RS05905 -2.3 -6.2 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
ABZR86_RS19800 -2.2 -9.2 RNase adapter RapZ compare
ABZR86_RS20980 -2.2 -2.2 hypothetical protein compare
ABZR86_RS18780 -2.2 -2.4 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR86_RS19860 -2.1 -8.8 phosphoribosylglycinamide formyltransferase compare
ABZR86_RS05890 -2.1 -10.3 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase compare
ABZR86_RS10830 -2.0 -1.8 Holliday junction branch migration DNA helicase RuvB compare
ABZR86_RS18615 -2.0 -2.7 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABZR86_RS13850 -2.0 -5.2 phosphoribosylamine--glycine ligase compare
ABZR86_RS07660 -1.9 -3.8 exodeoxyribonuclease V subunit gamma compare
ABZR86_RS06030 -1.9 -1.4 transcription termination factor NusA compare
ABZR86_RS14700 -1.9 -4.0 glucose-6-phosphate dehydrogenase compare
ABZR86_RS13515 -1.9 -4.6 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
ABZR86_RS15935 -1.9 -10.8 biosynthetic-type acetolactate synthase large subunit compare
ABZR86_RS18360 -1.9 -8.2 response regulator transcription factor compare
ABZR86_RS21575 -1.9 -5.5 [protein-PII] uridylyltransferase compare
ABZR86_RS08695 -1.9 -7.2 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
ABZR86_RS15940 -1.8 -6.4 ketol-acid reductoisomerase compare
ABZR86_RS21020 -1.8 -8.3 ATP-binding protein compare
ABZR86_RS13055 -1.8 -7.3 glucokinase compare
ABZR86_RS11825 -1.8 -2.0 citrate synthase compare
ABZR86_RS03785 -1.8 -1.5 malonate decarboxylase holo-ACP synthase compare
ABZR86_RS18450 -1.7 -3.5 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
ABZR86_RS12410 -1.7 -3.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABZR86_RS05995 -1.7 -10.8 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
ABZR86_RS15950 -1.7 -4.3 3-isopropylmalate dehydrogenase compare
ABZR86_RS15515 -1.7 -3.2 nitrogen regulation protein NR(I) compare
ABZR86_RS15025 -1.7 -2.3 tyrosine recombinase XerC compare
ABZR86_RS08685 -1.7 -4.2 glutamate 5-kinase compare
ABZR86_RS15970 -1.6 -5.0 2-isopropylmalate synthase compare
ABZR86_RS05900 -1.6 -6.9 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABZR86_RS15960 -1.6 -7.6 3-isopropylmalate dehydratase large subunit compare
ABZR86_RS15980 -1.6 -3.0 homoserine kinase (EC 2.7.1.39) (from data) compare
ABZR86_RS19805 -1.6 -3.5 HPr(Ser) kinase/phosphatase compare
ABZR86_RS02545 -1.6 -2.7 Ref family recombination enhancement nuclease compare
ABZR86_RS19225 -1.6 -3.2 site-specific tyrosine recombinase XerD compare
ABZR86_RS15965 -1.6 -7.1 branched-chain amino acid transaminase compare
ABZR86_RS05895 -1.6 -7.6 phosphoadenylyl-sulfate reductase compare
ABZR86_RS08680 -1.5 -6.9 glutamate-5-semialdehyde dehydrogenase compare
ABZR86_RS02305 -1.5 -0.8 hypothetical protein compare
ABZR86_RS11580 -1.5 -8.3 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) conserved
ABZR86_RS02795 -1.5 -1.6 phosphoglycerate mutase compare
ABZR86_RS08480 -1.4 -3.5 methylisocitrate lyase compare
ABZR86_RS08430 -1.4 -1.8 2-methylaconitate cis-trans isomerase PrpF compare
ABZR86_RS14690 -1.4 -3.8 phosphogluconate dehydratase compare
ABZR86_RS07585 -1.4 -6.9 homocysteine S-methyltransferase family protein compare
ABZR86_RS04380 -1.4 -2.5 universal stress protein compare
ABZR86_RS11820 -1.4 -2.0 hypothetical protein compare
ABZR86_RS02880 -1.4 -7.5 sulfate ABC transporter substrate-binding protein compare
ABZR86_RS10155 -1.4 -1.2 HAMP domain-containing sensor histidine kinase compare
ABZR86_RS15945 -1.3 -4.3 dihydroxy-acid dehydratase compare
ABZR86_RS16760 -1.3 -1.5 phage tail terminator-like protein compare
ABZR86_RS04495 -1.3 -1.1 hypothetical protein compare
ABZR86_RS15955 -1.3 -6.0 3-isopropylmalate dehydratase small subunit compare
ABZR86_RS16795 -1.3 -9.7 glutamate synthase large subunit compare
ABZR86_RS02890 -1.3 -5.0 sulfate ABC transporter permease subunit CysW compare
ABZR86_RS07590 -1.3 -8.3 methionine synthase compare
ABZR86_RS06275 -1.2 -3.6 DUF6165 family protein compare
ABZR86_RS07495 -1.2 -1.6 hypothetical protein compare
ABZR86_RS02195 -1.2 -2.8 ATP-dependent Clp protease adapter ClpS compare
ABZR86_RS05860 -1.2 -2.0 adenylosuccinate lyase compare
ABZR86_RS07340 -1.2 -1.8 tRNA-Leu compare
ABZR86_RS10945 -1.2 -4.9 trehalose-phosphatase compare
ABZR86_RS02885 -1.1 -5.4 sulfate ABC transporter permease subunit CysT compare
ABZR86_RS18675 -1.1 -2.8 phosphoglycerate kinase compare
ABZR86_RS17965 -1.1 -1.4 hypothetical protein compare
ABZR86_RS16800 -1.1 -6.3 FAD-dependent oxidoreductase compare
ABZR86_RS00685 -1.1 -1.4 carbon storage regulator CsrA compare
ABZR86_RS13920 -1.1 -6.9 CDP-glycerol glycerophosphotransferase family protein compare
ABZR86_RS05820 -1.0 -2.4 GntR family transcriptional regulator compare
ABZR86_RS12200 -1.0 -3.5 ribulose-phosphate 3-epimerase compare
ABZR86_RS14490 -1.0 -1.4 LysR substrate-binding domain-containing protein compare
ABZR86_RS22245 -1.0 -3.8 flagellar hook-length control protein FliK compare
ABZR86_RS18150 -1.0 -6.3 universal stress protein compare
ABZR86_RS02530 -1.0 -1.8 hypothetical protein compare
ABZR86_RS10840 -1.0 -2.0 Holliday junction branch migration protein RuvA compare
ABZR86_RS16285 -1.0 -5.8 cell division protein ZapE compare
ABZR86_RS05880 -1.0 -5.2 siroheme synthase CysG compare
ABZR86_RS07580 -1.0 -1.8 metalloregulator ArsR/SmtB family transcription factor compare
ABZR86_RS12790 -1.0 -3.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
ABZR86_RS11735 -0.9 -0.9 large-conductance mechanosensitive channel protein MscL compare
ABZR86_RS19910 -0.9 -1.7 inorganic phosphate transporter compare
ABZR86_RS13415 -0.9 -1.3 DUF1656 domain-containing protein compare
ABZR86_RS10340 -0.9 -2.2 chemotaxis protein CheB compare
ABZR86_RS06355 -0.9 -3.7 folate-binding protein YgfZ compare
ABZR86_RS20150 -0.9 -1.6 PilZ domain-containing protein compare
ABZR86_RS08435 -0.9 -2.8 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR86_RS01480 -0.9 -1.5 hypothetical protein compare
ABZR86_RS02415 -0.9 -1.4 hypothetical protein compare
ABZR86_RS08905 -0.9 -4.5 carbonate dehydratase compare
ABZR86_RS06740 -0.9 -1.7 YerC/YecD family TrpR-related protein compare
ABZR86_RS18775 -0.9 -0.8 nucleotidyltransferase family protein compare
ABZR86_RS08150 -0.9 -0.9 DeoR/GlpR family DNA-binding transcription regulator compare
ABZR86_RS19795 -0.9 -3.4 PTS sugar transporter subunit IIA compare
ABZR86_RS01885 -0.8 -0.8 DUF5668 domain-containing protein compare
ABZR86_RS11720 -0.8 -1.2 ABC transporter ATP-binding protein compare
ABZR86_RS19815 -0.8 -5.3 RNA polymerase factor sigma-54 compare
ABZR86_RS12595 -0.8 -1.0 cell division ATP-binding protein FtsE compare
ABZR86_RS12960 -0.8 -0.9 hypothetical protein compare
ABZR86_RS08460 -0.8 -1.4 hypothetical protein compare
ABZR86_RS19385 -0.8 -2.2 low affinity iron permease family protein compare
ABZR86_RS13910 -0.8 -5.9 glycosyltransferase compare
ABZR86_RS12350 -0.8 -0.9 glycine zipper 2TM domain-containing protein compare
ABZR86_RS20475 -0.8 -2.9 FAD-dependent oxidoreductase compare
ABZR86_RS00770 -0.8 -4.2 PhoH family protein compare
ABZR86_RS02810 -0.8 -1.6 hypothetical protein compare
ABZR86_RS19065 -0.8 -1.3 glutaredoxin family protein compare
ABZR86_RS13905 -0.8 -5.0 glycosyltransferase family 1 protein compare
ABZR86_RS15045 -0.8 -5.5 hypothetical protein compare
ABZR86_RS08350 -0.8 -2.7 protease modulator HflC compare
ABZR86_RS18960 -0.8 -2.4 TetR/AcrR family transcriptional regulator compare
ABZR86_RS02400 -0.8 -0.8 hypothetical protein compare
ABZR86_RS00570 -0.8 -1.7 acetoacetyl-CoA reductase compare
ABZR86_RS01045 -0.8 -1.2 response regulator transcription factor compare
ABZR86_RS10210 -0.8 -1.7 ADP compounds hydrolase NudE compare
ABZR86_RS22230 -0.8 -1.5 chemotaxis protein CheA compare
ABZR86_RS05005 -0.8 -1.9 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
ABZR86_RS05910 -0.8 -1.7 cupin domain-containing protein compare
ABZR86_RS01665 -0.8 -2.3 gluconate 2-dehydrogenase subunit 3 family protein compare
ABZR86_RS12835 -0.8 -2.6 DedA family protein compare
ABZR86_RS18715 -0.8 -3.8 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABZR86_RS08630 -0.7 -1.1 SDR family NAD(P)-dependent oxidoreductase compare
ABZR86_RS20240 -0.7 -1.4 flagellar biosynthetic protein FliR compare
ABZR86_RS20820 -0.7 -0.8 CsbD family protein compare
ABZR86_RS17400 -0.7 -4.7 acetylornithine transaminase compare
ABZR86_RS20190 -0.7 -1.5 flagellar export protein FliJ compare
ABZR86_RS13915 -0.7 -5.3 glycosyltransferase family 2 protein compare
ABZR86_RS19280 -0.7 -1.0 peptide deformylase compare
ABZR86_RS03975 -0.7 -1.2 class I SAM-dependent methyltransferase compare
ABZR86_RS01685 -0.7 -2.6 Gfo/Idh/MocA family oxidoreductase compare
ABZR86_RS03265 -0.7 -1.5 acyl carrier protein compare
ABZR86_RS21335 -0.7 -0.6 response regulator transcription factor compare
ABZR86_RS10005 -0.7 -1.7 acyltransferase compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source L-Isoleucine in Dyella japonica UNC79MFTsu3.2

For nitrogen source L-Isoleucine across organisms