Experiment set3IT088 for Pseudomonas fluorescens FW300-N2E2

Compare to:

inner cut, LB soft agar motility assay

Genes with specific phenotypes:

  gene name fitness t score description  
Pf6N2E2_2585 -5.7 -5.6 Flagellar hook-length control protein FliK conserved
Pf6N2E2_2623 -5.6 -6.7 Flagellar hook-associated protein FlgK conserved
Pf6N2E2_2575 -5.5 -6.5 Flagellar biosynthesis protein FlhF compare
Pf6N2E2_2622 -5.0 -8.4 Flagellar hook-associated protein FlgL conserved
Pf6N2E2_2563 -4.9 -12.2 FIG00953562: hypothetical protein compare
Pf6N2E2_5589 -4.8 -7.3 Sodium-type flagellar protein motY precursor conserved
Pf6N2E2_5963 -4.6 -6.3 lipoprotein, putative conserved
Pf6N2E2_2569 -4.5 -9.1 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) conserved
Pf6N2E2_2600 -4.3 -7.8 Flagellar hook-associated protein FliD conserved
Pf6N2E2_2567 -4.2 -6.5 Flagellar motor rotation protein MotB conserved
Pf6N2E2_2566 -4.2 -5.8 Chromosome (plasmid) partitioning protein ParA conserved
Pf6N2E2_2570 -4.0 -5.2 Signal transduction histidine kinase CheA (EC 2.7.3.-) conserved
Pf6N2E2_2565 -4.0 -10.1 CheW domain protein conserved
Pf6N2E2_2568 -4.0 -6.1 Flagellar motor rotation protein MotA conserved
Pf6N2E2_2602 -3.9 -7.3 Flagellin protein FlaA compare
Pf6N2E2_5693 -3.8 -11.0 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) conserved
Pf6N2E2_2599 -3.8 -6.9 Flagellar biosynthesis protein FliS conserved
Pf6N2E2_2564 -3.6 -5.1 Positive regulator of CheA protein activity (CheW) conserved
Pf6N2E2_69 -3.5 -7.4 Probable type IV pilus assembly FimV-related transmembrane protein conserved
Pf6N2E2_2303 -3.3 -7.0 Aerotaxis receptor Aer conserved
Pf6N2E2_5129 -3.1 -11.5 ClpB protein conserved
Pf6N2E2_5893 -2.6 -6.7 FIG00956448: hypothetical protein conserved
Pf6N2E2_5184 -2.3 -9.5 Chromosome segregation ATPases conserved
Pf6N2E2_2763 -2.2 -8.3 Predicted signal transduction protein conserved
Pf6N2E2_582 -2.2 -7.8 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) compare
Pf6N2E2_5186 -2.1 -6.3 FIG00954491: hypothetical protein conserved
Pf6N2E2_3486 -2.0 -5.2 FIG00953575: hypothetical protein conserved
Pf6N2E2_584 -2.0 -8.9 ABC transporter, periplasmic substrate-binding protein conserved
Pf6N2E2_731 -1.9 -5.1 Respiratory nitrate reductase delta chain (EC 1.7.99.4) compare
Pf6N2E2_4167 -1.9 -5.2 Zinc ABC transporter, ATP-binding protein ZnuC conserved
Pf6N2E2_4809 -1.8 -9.0 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases compare
Pf6N2E2_2596 -1.8 -5.9 Flagellar sensor histidine kinase FleS conserved
Pf6N2E2_583 -1.8 -5.6 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf6N2E2_3906 -1.7 -7.0 Transcription accessory protein (S1 RNA-binding domain) conserved
Pf6N2E2_2595 -1.7 -5.8 Flagellar regulatory protein FleQ conserved
Pf6N2E2_5185 -1.7 -5.1 FIG00961017: hypothetical protein compare
Pf6N2E2_2305 -1.6 -6.8 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_3891 -1.5 -7.8 Putative formate dehydrogenase oxidoreductase protein compare
Pf6N2E2_2194 -1.5 -5.5 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) compare
Pf6N2E2_2030 -1.2 -6.1 ABC transporter, periplasmic substrate-binding protein compare
Pf6N2E2_4233 -1.1 -6.3 sulfatase domain protein, putative compare
Pf6N2E2_2621 +1.1 6.5 glycosyl transferase, group 2 family protein compare
Pf6N2E2_1678 +1.3 6.7 Major facilitator family transporter compare
Pf6N2E2_5278 +1.5 8.1 Signal transduction histidine kinase compare
Pf6N2E2_4926 +1.7 11.0 hypothetical protein compare
Pf6N2E2_816 +1.9 10.6 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf6N2E2_4617 +2.2 12.3 Signal transduction histidine kinase CheA (EC 2.7.3.-) conserved
Pf6N2E2_2302 +2.2 7.5 CAAX amino terminal protease family protein compare
Pf6N2E2_818 +2.3 8.6 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_2329 +2.3 11.6 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) conserved
Pf6N2E2_3871 +2.5 16.7 FIG00553872: hypothetical protein compare
Pf6N2E2_815 +2.7 14.4 Signal transduction histidine kinase compare
Pf6N2E2_2601 +2.7 5.5 Flagellin protein FlaG conserved
Pf6N2E2_4616 +2.8 11.8 type IV pilus biogenesis protein PilJ conserved
Pf6N2E2_5872 +3.1 9.0 Sensor histidine kinase/response regulator compare
Pf6N2E2_5873 +3.1 10.1 FIG00953467: hypothetical protein compare
Pf6N2E2_5692 +3.3 7.2 Chemotaxis protein CheV (EC 2.7.3.-) conserved
Pf6N2E2_3508 +4.6 27.0 Probable two-component response regulator conserved
Pf6N2E2_3827 +5.5 6.7 FIG00955429: hypothetical protein conserved


Specific phenotypes for motility Agar across organisms