Experiment set3IT088 for Pseudomonas fluorescens FW300-N2E2
inner cut, LB soft agar motility assay
Group: motilityMedia: LB + Agar (3 g/L)
Culturing: pseudo6_N2E2_ML5, Agar plate, Aerobic, at 30 (C), shaken=0 rpm, (Solid)
By: Mark on 3/14/2015
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Specific Phenotypes
For 59 genes in this experiment
For motility Agar in Pseudomonas fluorescens FW300-N2E2
For motility Agar across organisms
SEED Subsystems
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Oxidative phosphorylation
- Valine, leucine and isoleucine degradation
- Glyoxylate and dicarboxylate metabolism
- Methane metabolism
- Nitrogen metabolism
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| formate oxidation to CO2 | 1 | 1 | 1 |
| arsenite to oxygen electron transfer | 2 | 1 | 1 |
| arsenite to oxygen electron transfer (via azurin) | 3 | 1 | 1 |
| aerobic respiration II (cytochrome c) (yeast) | 4 | 3 | 1 |
| aerobic respiration I (cytochrome c) | 4 | 3 | 1 |
| oxalate degradation VI | 4 | 1 | 1 |
| oxalate degradation III | 5 | 1 | 1 |
| L-leucine degradation I | 6 | 5 | 1 |
| Fe(II) oxidation | 6 | 3 | 1 |
| peptidoglycan recycling II | 10 | 8 | 1 |
| superpathway of C1 compounds oxidation to CO2 | 12 | 5 | 1 |
| purine nucleobases degradation I (anaerobic) | 15 | 6 | 1 |
| purine nucleobases degradation II (anaerobic) | 24 | 16 | 1 |