Experiment set3IT088 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

MOKA

200 most important genes:

  gene name fitness t score description  
Xcc-8004.5192.1 -4.9 -13.1 hypothetical protein compare
Xcc-8004.5193.1 -4.1 -20.9 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.4112.1 -3.8 -6.7 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.2217.1 -3.1 -5.5 FIG01209779: hypothetical protein compare
Xcc-8004.4948.1 -2.9 -3.8 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.3054.1 -2.5 -3.0 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.3324.1 -2.2 -5.3 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.271.1 -2.1 -3.6 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.2922.1 -1.8 -2.8 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.4039.1 -1.7 -4.0 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.3433.1 -1.5 -6.7 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.1914.1 -1.4 -2.5 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Xcc-8004.2343.1 -1.4 -2.7 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.3103.1 -1.3 -2.4 hypothetical protein compare
Xcc-8004.4732.1 -1.3 -1.9 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.3855.1 -1.3 -6.2 FIG01209965: hypothetical protein compare
Xcc-8004.3394.1 -1.3 -4.2 hypothetical protein compare
Xcc-8004.3979.1 -1.2 -6.0 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Xcc-8004.649.1 -1.2 -1.4 hypothetical protein compare
Xcc-8004.1657.1 -1.2 -2.0 PTS system, mannose-specific IIA component compare
Xcc-8004.3473.1 -1.2 -1.9 FIG01213437: hypothetical protein compare
Xcc-8004.1511.1 -1.1 -3.1 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.4322.1 -1.1 -2.3 nucleoprotein/polynucleotide-associated enzyme compare
Xcc-8004.1003.1 -1.1 -2.5 FIG027190: Putative transmembrane protein compare
Xcc-8004.1961.1 -1.1 -2.2 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Xcc-8004.4329.1 -1.1 -1.8 D-galactose 1-dehydrogenase (EC 1.1.1.48) compare
Xcc-8004.3346.1 -1.1 -2.9 hypothetical protein compare
Xcc-8004.659.1 -1.1 -3.1 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.2182.1 -1.1 -7.0 NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form compare
Xcc-8004.4526.1 -1.0 -5.9 Fumarylacetoacetate hydrolase family protein compare
Xcc-8004.1359.1 -1.0 -4.4 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.770.1 -1.0 -2.8 hypothetical protein compare
Xcc-8004.3647.1 -1.0 -3.8 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Xcc-8004.574.1 -1.0 -4.6 Di-/tripeptide transporter compare
Xcc-8004.4446.1 -1.0 -4.3 Cytosol aminopeptidase PepA (EC 3.4.11.1) compare
Xcc-8004.1693.1 -1.0 -5.0 Iron-uptake factor PiuC compare
Xcc-8004.3976.1 -1.0 -3.1 2-methylaconitate cis-trans isomerase compare
Xcc-8004.1891.1 -0.9 -1.5 Exodeoxyribonuclease VII small subunit (EC 3.1.11.6) compare
Xcc-8004.3982.1 -0.9 -4.9 Propionate catabolism operon regulatory protein PrpR compare
Xcc-8004.2422.1 -0.9 -2.3 Putative stress-responsive transcriptional regulator compare
Xcc-8004.1027.1 -0.9 -1.4 Two-component system sensor protein compare
Xcc-8004.3898.1 -0.9 -1.4 SOS-response repressor and protease LexA (EC 3.4.21.88) compare
Xcc-8004.998.1 -0.9 -2.2 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.950.1 -0.9 -1.6 General secretion pathway protein L compare
Xcc-8004.4384.1 -0.9 -1.9 hypothetical protein compare
Xcc-8004.5363.1 -0.9 -2.8 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Xcc-8004.713.1 -0.9 -1.7 FIG01210186: hypothetical protein compare
Xcc-8004.3156.1 -0.9 -4.2 Magnesium and cobalt efflux protein CorC compare
Xcc-8004.4373.1 -0.9 -3.4 LppC putative lipoprotein compare
Xcc-8004.288.1 -0.9 -1.3 Ferredoxin compare
Xcc-8004.1362.1 -0.8 -3.0 Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) compare
Xcc-8004.4210.1 -0.8 -3.9 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.1521.1 -0.8 -2.2 FIG01209895: hypothetical protein compare
Xcc-8004.2401.1 -0.8 -2.1 FIG00545367: hypothetical protein compare
Xcc-8004.4752.1 -0.8 -2.0 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.234.1 -0.8 -5.4 cardiolipin synthase compare
Xcc-8004.4776.1 -0.8 -1.8 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Xcc-8004.130.1 -0.8 -4.4 hypothetical protein compare
Xcc-8004.3222.1 -0.8 -2.1 Mobile element protein compare
Xcc-8004.1694.1 -0.8 -5.5 Ferrichrome-iron receptor compare
Xcc-8004.1959.1 -0.8 -0.8 hypothetical protein compare
Xcc-8004.270.1 -0.8 -3.2 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.983.1 -0.8 -2.8 Glutathione-dependent formaldehyde-activating enzyme (EC 4.4.1.22) compare
Xcc-8004.5203.1 -0.8 -1.2 Twin-arginine translocation protein TatB compare
Xcc-8004.2105.1 -0.8 -4.0 FIG01210123: hypothetical protein compare
Xcc-8004.3817.1 -0.7 -3.8 Cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-) compare
Xcc-8004.1720.1 -0.7 -1.9 UPF0301 protein YqgE compare
Xcc-8004.3792.1 -0.7 -1.3 Mobile element protein compare
Xcc-8004.1871.1 -0.7 -2.5 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.3668.1 -0.7 -2.2 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.787.1 -0.7 -1.0 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.171.1 -0.7 -1.1 hypothetical protein compare
Xcc-8004.5048.1 -0.7 -3.6 permease compare
Xcc-8004.2861.1 -0.7 -1.6 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.3576.1 -0.7 -3.9 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.127.1 -0.7 -1.6 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.1380.1 -0.7 -1.5 COG2827: putative endonuclease containing a URI domain compare
Xcc-8004.2011.1 -0.6 -1.9 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.3875.1 -0.6 -1.2 FIG01212144: hypothetical protein compare
Xcc-8004.1747.1 -0.6 -2.0 FIG01210249: hypothetical protein compare
Xcc-8004.337.1 -0.6 -1.9 ATPase, AFG1 family compare
Xcc-8004.5352.1 -0.6 -1.7 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.2734.1 -0.6 -2.8 Mlr7403 protein compare
Xcc-8004.2911.1 -0.6 -1.4 Transcription elongation factor GreA compare
Xcc-8004.1790.1 -0.6 -1.9 Zinc uptake regulation protein ZUR compare
Xcc-8004.5252.1 -0.6 -3.5 FIG01210658: hypothetical protein compare
Xcc-8004.846.1 -0.6 -1.9 Protein of unknown function DUF484 compare
Xcc-8004.357.1 -0.6 -2.3 FIG01210225: hypothetical protein compare
Xcc-8004.2910.1 -0.6 -3.0 Regulatory protein, RpfE type compare
Xcc-8004.5365.1 -0.6 -3.3 Uncharacterized ABC transporter, permease component YrbE compare
Xcc-8004.5171.1 -0.6 -2.8 Transcriptional regulator, IclR family compare
Xcc-8004.5019.1 -0.6 -1.4 FIG01210147: hypothetical protein compare
Xcc-8004.1223.1 -0.6 -1.6 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Xcc-8004.3130.1 -0.6 -3.1 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Xcc-8004.898.1 -0.6 -1.7 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1772.1 -0.6 -1.3 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.4024.1 -0.6 -2.7 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.244.1 -0.6 -2.6 FIG01209881: hypothetical protein compare
Xcc-8004.323.1 -0.6 -1.8 FIG01210738: hypothetical protein compare
Xcc-8004.2862.1 -0.6 -3.5 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Xcc-8004.3498.1 -0.6 -1.1 hypothetical protein compare
Xcc-8004.1568.1 -0.6 -1.5 Glycine cleavage system H protein compare
Xcc-8004.3296.1 -0.6 -2.5 Histidine ammonia-lyase (EC 4.3.1.3) compare
Xcc-8004.916.1 -0.6 -2.0 transcriptional regulator compare
Xcc-8004.623.1 -0.6 -1.6 Phosphoserine phosphatase compare
Xcc-8004.1514.1 -0.6 -2.1 L-asparaginase (EC 3.5.1.1) compare
Xcc-8004.2920.1 -0.6 -3.5 Ferrous iron transport protein B compare
Xcc-8004.742.1 -0.6 -1.9 Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39) compare
Xcc-8004.3431.1 -0.6 -1.5 DNA repair protein RecN compare
Xcc-8004.1848.1 -0.6 -1.7 Ribonuclease E inhibitor RraA compare
Xcc-8004.2921.1 -0.6 -1.4 ferrous iron transport protein compare
Xcc-8004.3879.1 -0.6 -2.2 hypothetical protein compare
Xcc-8004.4000.1 -0.6 -1.9 COG1399 protein, clustered with ribosomal protein L32p compare
Xcc-8004.2356.1 -0.6 -1.7 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
Xcc-8004.2646.1 -0.5 -1.2 hypothetical protein compare
Xcc-8004.3395.1 -0.5 -1.5 Transcriptional regulator, GntR family compare
Xcc-8004.4419.1 -0.5 -1.9 Glycosyltransferase (EC 2.4.1.-) compare
Xcc-8004.694.1 -0.5 -2.0 hypothetical protein compare
Xcc-8004.3642.1 -0.5 -1.0 FIG01211227: hypothetical protein compare
Xcc-8004.4796.1 -0.5 -1.3 PhnB protein compare
Xcc-8004.4947.1 -0.5 -1.1 Histone H1 compare
Xcc-8004.4635.1 -0.5 -1.3 hypothetical protein compare
Xcc-8004.776.1 -0.5 -2.2 Fatty acid desaturase compare
Xcc-8004.2358.1 -0.5 -3.2 Segregation and condensation protein A compare
Xcc-8004.1873.1 -0.5 -1.2 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.878.1 -0.5 -2.3 Sugar kinase compare
Xcc-8004.4741.1 -0.5 -3.2 hypothetical protein compare
Xcc-8004.2179.1 -0.5 -4.3 RND efflux system, inner membrane transporter CmeB compare
Xcc-8004.1336.1 -0.5 -3.0 two-component system sensor protein compare
Xcc-8004.3968.1 -0.5 -1.6 Mobile element protein compare
Xcc-8004.3980.1 -0.5 -2.6 2-methylcitrate synthase (EC 2.3.3.5) compare
Xcc-8004.2580.1 -0.5 -2.1 Mobile element protein compare
Xcc-8004.315.1 -0.5 -1.6 FIG01211941: hypothetical protein compare
Xcc-8004.3585.1 -0.5 -2.8 Transporter compare
Xcc-8004.290.1 -0.5 -2.3 NAD(P)H steroid dehydrogenase-like protein in alkane synthesis cluster compare
Xcc-8004.3165.1 -0.5 -1.1 Glycosyltransferase (EC 2.4.1.-) compare
Xcc-8004.5039.1 -0.5 -1.9 FIG032621: Hydrolase, alpha/beta hydrolase fold family compare
Xcc-8004.1196.1 -0.5 -2.5 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.1838.1 -0.5 -1.2 FIG002958: hypothetical protein compare
Xcc-8004.934.1 -0.5 -1.2 FolM Alternative dihydrofolate reductase 1 compare
Xcc-8004.456.1 -0.5 -1.1 carbonic anhydrase, family 3 compare
Xcc-8004.1436.1 -0.5 -1.0 Holliday junction DNA helicase RuvA compare
Xcc-8004.2361.1 -0.5 -1.4 Cell division protein BolA compare
Xcc-8004.4046.1 -0.5 -3.6 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.4092.1 -0.5 -3.2 FIG01209901: hypothetical protein compare
Xcc-8004.2652.1 -0.5 -1.3 response regulator compare
Xcc-8004.2259.1 -0.5 -1.9 PhbF compare
Xcc-8004.4596.1 -0.5 -3.1 hypothetical protein compare
Xcc-8004.1242.1 -0.5 -2.1 Phosphoglycolate phosphatase (EC 3.1.3.18) compare
Xcc-8004.2833.1 -0.5 -1.6 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Xcc-8004.3816.1 -0.5 -2.7 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.2579.1 -0.5 -1.4 Transcriptional regulator in PFGI-1-like cluster compare
Xcc-8004.1135.1 -0.5 -1.4 FIG01210448: hypothetical protein compare
Xcc-8004.997.1 -0.5 -1.7 Possible GRAM domain compare
Xcc-8004.2839.1 -0.5 -0.7 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Xcc-8004.1026.1 -0.5 -1.7 Tricarboxylate transport transcriptional regulator TctD compare
Xcc-8004.914.1 -0.5 -2.7 tail-specific protease compare
Xcc-8004.2074.1 -0.5 -1.7 Transcriptional regulator, MerR family compare
Xcc-8004.2180.1 -0.5 -3.3 RND efflux system, membrane fusion protein CmeA compare
Xcc-8004.4168.1 -0.5 -2.0 GTP-binding and nucleic acid-binding protein YchF compare
Xcc-8004.4286.1 -0.5 -2.7 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Xcc-8004.5369.1 -0.5 -2.8 Lipoprotein compare
Xcc-8004.4256.1 -0.5 -1.5 Transcriptional regulator for ferulate or vanillate catabolism compare
Xcc-8004.1512.1 -0.5 -1.5 RNA polymerase sigma-70 factor compare
Xcc-8004.1416.1 -0.5 -1.2 Glutathione-regulated potassium-efflux system ATP-binding protein compare
Xcc-8004.4339.1 -0.5 -1.3 FIG01211792: hypothetical protein compare
Xcc-8004.1900.1 -0.5 -1.3 Acyl-CoA thioester hydrolase compare
Xcc-8004.3402.1 -0.4 -1.5 FIG01210246: hypothetical protein compare
Xcc-8004.2096.1 -0.4 -1.9 FIG003671: Metal-dependent hydrolase compare
Xcc-8004.3798.1 -0.4 -0.9 Anti-sigma B factor RsbT compare
Xcc-8004.2372.1 -0.4 -2.4 Pheromone shutdown protein compare
Xcc-8004.2923.1 -0.4 -3.0 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Xcc-8004.75.1 -0.4 -1.6 hypothetical protein compare
Xcc-8004.3320.1 -0.4 -0.8 FIG01209869: hypothetical protein compare
Xcc-8004.2389.1 -0.4 -0.9 protein of unknown function DUF1244 compare
Xcc-8004.5051.1 -0.4 -1.4 2-dehydropantoate 2-reductase (EC 1.1.1.169) compare
Xcc-8004.4105.1 -0.4 -1.4 Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) compare
Xcc-8004.2561.1 -0.4 -2.9 FIG01213638: hypothetical protein compare
Xcc-8004.2199.1 -0.4 -1.2 Hemerythrin-like protein PA1673 compare
Xcc-8004.4341.1 -0.4 -1.3 FIG01210371: hypothetical protein compare
Xcc-8004.1228.1 -0.4 -2.6 Xaa-Pro dipeptidase PepQ (EC 3.4.13.9) compare
Xcc-8004.5367.1 -0.4 -2.2 Uncharacterized ABC transporter, auxiliary component YrbC compare
Xcc-8004.3029.1 -0.4 -3.2 Aldehyde dehydrogenase B (EC 1.2.1.22) compare
Xcc-8004.3676.1 -0.4 -1.4 Translation elongation factor LepA compare
Xcc-8004.5086.1 -0.4 -1.1 membrane protein, inferred for ABFAE pathway compare
Xcc-8004.3333.1 -0.4 -1.9 5'-nucleotidase (EC 3.1.3.5) compare
Xcc-8004.852.1 -0.4 -1.7 ATP-dependent hsl protease ATP-binding subunit HslU compare
Xcc-8004.2339.1 -0.4 -1.1 Cytochrome c heme lyase subunit CcmH compare
Xcc-8004.981.1 -0.4 -1.3 FrmR: Negative transcriptional regulator of formaldehyde detoxification operon compare
Xcc-8004.968.1 -0.4 -2.8 Periplasmic thiol:disulfide interchange protein DsbA compare
Xcc-8004.4836.1 -0.4 -2.0 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.5161.1 -0.4 -1.5 FIG01212148: hypothetical protein compare
Xcc-8004.195.1 -0.4 -0.9 phosphoesterase, putative compare
Xcc-8004.704.1 -0.4 -1.3 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I alpha (EC 2.5.1.54) compare
Xcc-8004.5100.1 -0.4 -1.3 FIG01211066: hypothetical protein compare
Xcc-8004.999.1 -0.4 -1.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.2632.1 -0.4 -1.4 Minor coat protein compare
Xcc-8004.5366.1 -0.4 -3.4 Uncharacterized ABC transporter, periplasmic component YrbD compare
Xcc-8004.5167.1 -0.4 -1.4 L-fuconate dehydratase (EC 4.2.1.68) compare
Xcc-8004.1222.1 -0.4 -1.0 Glyoxalase family protein compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in moka experiments