Experiment set3IT088 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Cobalt chloride hexahydrate 0.08 mM

200 most important genes:

  gene name fitness t score description  
Ga0059261_1545 -3.5 -5.8 Fe2+/Zn2+ uptake regulation proteins compare
Ga0059261_0349 -3.3 -5.0 MarR family compare
Ga0059261_1507 -3.2 -3.1 deoxycytidine triphosphate deaminase compare
Ga0059261_1258 -3.0 -22.1 TonB-dependent siderophore receptor compare
Ga0059261_1257 -2.8 -8.0 Uncharacterized iron-regulated protein compare
Ga0059261_1868 -2.8 -4.0 ABC-type uncharacterized transport system, auxiliary component compare
Ga0059261_0171 -2.7 -3.2 Thiol-disulfide isomerase and thioredoxins compare
Ga0059261_1869 -2.6 -7.5 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Ga0059261_4188 -2.6 -7.3 pyridoxal-dependent decarboxylase, exosortase A system-associated compare
Ga0059261_2707 -2.5 -7.6 fructose-1,6-bisphosphatase, class II compare
Ga0059261_0170 -2.4 -5.5 Uncharacterized protein involved in biosynthesis of c-type cytochromes compare
Ga0059261_0875 -2.4 -3.0 Leucyl aminopeptidase compare
Ga0059261_0163 -2.4 -3.9 Major Facilitator Superfamily compare
Ga0059261_1563 -2.4 -4.2 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) compare
Ga0059261_2417 -2.2 -4.9 phytoene desaturase compare
Ga0059261_0613 -2.1 -4.3 FecR family protein compare
Ga0059261_4187 -2.1 -9.8 acyl-CoA ligase (AMP-forming), exosortase A-associated compare
Ga0059261_0172 -2.1 -8.3 Cytochrome c biogenesis factor compare
Ga0059261_0175 -2.1 -8.0 heme exporter protein CcmC compare
Ga0059261_1871 -2.0 -9.7 ABC transport permease subunit compare
Ga0059261_0121 -1.9 -3.1 Sporulation related domain compare
Ga0059261_3114 -1.9 -8.2 hypothetical protein compare
Ga0059261_2444 -1.8 -6.8 5-aminolevulinic acid synthase compare
Ga0059261_3488 -1.8 -2.2 Histidine kinase/HAMP domain compare
Ga0059261_2189 -1.8 -7.3 uncharacterized domain 1 compare
Ga0059261_0790 -1.7 -3.0 putative membrane protein insertion efficiency factor compare
Ga0059261_2190 -1.7 -3.4 PTS IIA-like nitrogen-regulatory protein PtsN compare
Ga0059261_2490 -1.6 -5.7 Small protein A (tmRNA-binding) compare
Ga0059261_1560 -1.6 -3.8 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Ga0059261_1870 -1.5 -4.4 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Ga0059261_3637 -1.4 -2.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_0852 -1.4 -6.2 Transcriptional regulators compare
Ga0059261_0474 -1.4 -9.5 cation diffusion facilitator family transporter compare
Ga0059261_2285 -1.4 -1.7 Fe2+ transport system protein A compare
Ga0059261_2458 -1.3 -6.2 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases compare
Ga0059261_0246 -1.3 -2.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
Ga0059261_1564 -1.3 -3.6 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
Ga0059261_2179 -1.3 -6.9 Phospholipid N-methyltransferase compare
Ga0059261_3127 -1.3 -4.7 hypothetical protein compare
Ga0059261_2243 -1.3 -2.8 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_2194 -1.3 -3.5 shikimate dehydrogenase (EC 1.1.1.25) (from data) compare
Ga0059261_2514 -1.2 -8.3 phosphoenolpyruvate-protein phosphotransferase compare
Ga0059261_3451 -1.2 -1.3 hypothetical protein compare
Ga0059261_3356 -1.2 -1.7 hypothetical protein compare
Ga0059261_0136 -1.2 -4.0 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation compare
Ga0059261_1565 -1.2 -8.7 cytochrome bo3 quinol oxidase subunit 1 apoprotein (EC 1.10.3.-) compare
Ga0059261_0245 -1.2 -1.4 pseudouridine synthase compare
Ga0059261_1293 -1.2 -7.6 (p)ppGpp synthetase, RelA/SpoT family compare
Ga0059261_0918 -1.2 -4.4 Phosphotransferase system, mannose/fructose-specific component IIA compare
Ga0059261_3671 -1.2 -2.3 Citrate lyase beta subunit compare
Ga0059261_4204 -1.2 -3.2 transcriptional regulator, TetR family compare
Ga0059261_4012 -1.1 -1.8 AMP nucleosidase compare
Ga0059261_3097 -1.1 -4.2 Calcineurin-like phosphoesterase compare
Ga0059261_1071 -1.1 -1.8 hypothetical protein compare
Ga0059261_3101 -1.1 -3.1 nucleotide sugar dehydrogenase compare
Ga0059261_2005 -1.1 -3.9 protoheme IX farnesyltransferase compare
Ga0059261_1929 -1.1 -3.6 Putative transmembrane protein (Alph_Pro_TM) compare
Ga0059261_0290 -1.1 -3.7 3-dehydroquinate dehydratase (EC 4.2.1.10) compare
Ga0059261_0239 -1.1 -1.8 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
Ga0059261_1382 -1.1 -5.3 periplasmic serine protease, Do/DeqQ family compare
Ga0059261_2418 -1.1 -3.3 lycopene cyclase compare
Ga0059261_3437 -1.0 -1.5 hypothetical protein compare
Ga0059261_0745 -1.0 -3.9 Uncharacterized membrane protein, required for colicin V production compare
Ga0059261_3125 -1.0 -1.5 Imidazoleglycerol-phosphate synthase compare
Ga0059261_2501 -1.0 -5.1 C-terminal peptidase (prc) compare
Ga0059261_1566 -1.0 -5.1 cytochrome o ubiquinol oxidase subunit II compare
Ga0059261_1611 -1.0 -7.5 Glucose/sorbosone dehydrogenases compare
Ga0059261_0174 -1.0 -2.0 hypothetical protein compare
Ga0059261_1928 -1.0 -3.1 Predicted permeases compare
Ga0059261_0664 -1.0 -1.7 pseudouridine synthase, RluA family compare
Ga0059261_1360 -1.0 -6.0 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Ga0059261_3341 -1.0 -4.3 ATP-dependent protease HslVU, peptidase subunit compare
Ga0059261_2498 -0.9 -3.2 hypothetical protein compare
Ga0059261_2013 -0.9 -6.8 signal peptidase I, bacterial type compare
Ga0059261_0087 -0.9 -1.8 hypothetical protein compare
Ga0059261_3276 -0.9 -4.4 ABC-type multidrug transport system, ATPase and permease components compare
Ga0059261_1696 -0.9 -2.7 Pyridine nucleotide-disulphide oxidoreductase/Reductase C-terminal compare
Ga0059261_3103 -0.9 -2.7 Glycosyltransferase compare
Ga0059261_3947 -0.9 -2.4 type II secretion system protein I (GspI) compare
Ga0059261_1369 -0.9 -5.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_3121 -0.8 -4.1 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_3159 -0.8 -2.8 TolR protein compare
Ga0059261_1605 -0.8 -4.4 transcriptional regulator, TetR family compare
Ga0059261_1831 -0.8 -2.3 hypothetical protein compare
Ga0059261_0321 -0.8 -1.5 hypothetical protein compare
Ga0059261_1408 -0.8 -2.0 Domain of unknown function (DUF4168) compare
Ga0059261_3502 -0.8 -1.9 Fatty acid desaturase compare
Ga0059261_3124 -0.8 -2.8 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Ga0059261_3119 -0.8 -2.4 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_2244 -0.8 -5.8 DNA polymerase I (EC 2.7.7.7) compare
Ga0059261_3211 -0.8 -4.8 hypothetical protein compare
Ga0059261_1453 -0.8 -4.8 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs compare
Ga0059261_0120 -0.8 -5.6 lytic murein transglycosylase compare
Ga0059261_0379 -0.8 -2.4 DNA binding domain, excisionase family compare
Ga0059261_1799 -0.8 -2.4 Uncharacterized protein conserved in bacteria (DUF2059) compare
Ga0059261_0197 -0.8 -1.2 hypothetical protein compare
Ga0059261_2126 -0.8 -4.0 ETC complex I subunit conserved region compare
Ga0059261_3129 -0.8 -4.2 SLBB domain/Polysaccharide biosynthesis/export protein compare
Ga0059261_3128 -0.8 -5.3 capsular exopolysaccharide family compare
Ga0059261_2987 -0.8 -1.6 hypothetical protein compare
Ga0059261_0037 -0.7 -4.6 hypothetical protein compare
Ga0059261_2350 -0.7 -1.8 hypothetical protein compare
Ga0059261_1190 -0.7 -3.2 hypothetical protein compare
Ga0059261_1417 -0.7 -1.5 transcriptional regulator, XRE family compare
Ga0059261_3083 -0.7 -2.7 hypothetical protein compare
Ga0059261_3808 -0.7 -1.8 Pyrroline-5-carboxylate reductase compare
Ga0059261_3896 -0.7 -2.2 integration host factor, beta subunit compare
Ga0059261_4013 -0.7 -1.7 hypothetical protein compare
Ga0059261_0810 -0.7 -2.3 Predicted Zn-dependent proteases and their inactivated homologs compare
Ga0059261_2314 -0.7 -2.1 Protein-disulfide isomerase compare
Ga0059261_1811 -0.7 -1.9 ATP:cob(I)alamin adenosyltransferase compare
Ga0059261_3440 -0.7 -1.1 hypothetical protein compare
Ga0059261_3208 -0.7 -1.4 hypothetical protein compare
Ga0059261_2008 -0.7 -5.8 cytochrome c oxidase, subunit I compare
Ga0059261_2145 -0.7 -2.8 ribosome-binding factor A compare
Ga0059261_1562 -0.7 -3.0 Uncharacterized conserved protein compare
Ga0059261_0494 -0.7 -1.8 ABC-type antimicrobial peptide transport system, ATPase component compare
Ga0059261_1872 -0.7 -2.3 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
Ga0059261_1561 -0.7 -3.3 Signal transduction histidine kinase compare
Ga0059261_0725 -0.7 -1.3 Fructose-1,6-bisphosphate aldolase compare
Ga0059261_3130 -0.7 -3.3 Lipid A core - O-antigen ligase and related enzymes compare
Ga0059261_3340 -0.7 -3.5 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) compare
Ga0059261_3948 -0.6 -2.0 type II secretion system protein H compare
Ga0059261_3156 -0.6 -2.9 peptidoglycan-associated lipoprotein compare
Ga0059261_3807 -0.6 -3.0 Uncharacterized conserved protein compare
Ga0059261_3939 -0.6 -2.5 transcriptional regulator, TetR family compare
Ga0059261_1601 -0.6 -1.5 protein-(glutamine-N5) methyltransferase, release factor-specific compare
Ga0059261_0255 -0.6 -1.5 SurA N-terminal domain/PPIC-type PPIASE domain compare
Ga0059261_2191 -0.6 -3.6 ribosomal subunit interface protein compare
Ga0059261_2324 -0.6 -2.2 integration host factor, alpha subunit compare
Ga0059261_1937 -0.6 -3.1 Protein of unknown function (DUF2807) compare
Ga0059261_3633 -0.6 -5.1 Acyl-CoA dehydrogenases compare
Ga0059261_3430 -0.6 -1.3 NADH:ubiquinone oxidoreductase 17.2 kD subunit compare
Ga0059261_2286 -0.6 -2.5 Fe2+ transport system protein B compare
Ga0059261_3493 -0.6 -2.2 hypothetical protein compare
Ga0059261_1998 -0.6 -4.2 Predicted SAM-dependent methyltransferases compare
Ga0059261_3965 -0.6 -3.2 formimidoylglutamate deiminase (EC 3.5.3.13) compare
Ga0059261_2840 -0.6 -1.4 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_0857 -0.6 -3.5 Phospholipid N-methyltransferase compare
Ga0059261_2204 -0.6 -3.9 tRNA modification GTPase trmE compare
Ga0059261_0633 -0.6 -1.5 Acetyltransferases, including N-acetylases of ribosomal proteins compare
Ga0059261_0671 -0.6 -2.2 Uncharacterized conserved protein compare
Ga0059261_4186 -0.6 -0.6 Phosphopantetheine attachment site compare
Ga0059261_2436 -0.6 -2.7 hypothetical protein compare
Ga0059261_2700 -0.5 -4.0 Putative Zn-dependent protease, contains TPR repeats compare
Ga0059261_2205 -0.5 -4.4 glucose-inhibited division protein A compare
Ga0059261_3233 -0.5 -2.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_2002 -0.5 -2.6 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Ga0059261_1206 -0.5 -4.6 Arabinose efflux permease compare
Ga0059261_1573 -0.5 -2.5 hypothetical protein compare
Ga0059261_3432 -0.5 -2.3 leucyl/phenylalanyl-tRNA--protein transferase compare
Ga0059261_1022 -0.5 -2.0 hypothetical protein compare
Ga0059261_3969 -0.5 -2.3 Serine hydrolase compare
Ga0059261_1363 -0.5 -2.7 PEP-CTERM-box response regulator transcription factor compare
Ga0059261_1904 -0.5 -1.0 Asparaginase compare
Ga0059261_3280 -0.5 -1.2 Uncharacterized conserved protein compare
Ga0059261_2048 -0.5 -3.3 Thiol-disulfide isomerase and thioredoxins compare
Ga0059261_3609 -0.5 -2.1 Protein of unknown function (DUF2945) compare
Ga0059261_1011 -0.5 -1.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
Ga0059261_2268 -0.5 -3.0 Cytochrome c2 compare
Ga0059261_1312 -0.5 -2.0 amino acid/peptide transporter (Peptide:H+ symporter), bacterial compare
Ga0059261_3938 -0.5 -3.0 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_0181 -0.5 -2.8 Predicted membrane-associated Zn-dependent proteases 1 compare
Ga0059261_1567 -0.5 -3.6 Arabinose efflux permease compare
Ga0059261_0357 -0.5 -1.3 hypothetical protein compare
Ga0059261_3945 -0.5 -2.9 type II secretion system protein D compare
Ga0059261_3141 -0.5 -1.4 Acetyltransferases compare
Ga0059261_0369 -0.5 -0.9 ribosomal protein L9 compare
Ga0059261_1080 -0.5 -1.5 Chemotaxis signal transduction protein compare
Ga0059261_3105 -0.5 -3.1 Methyltransferase domain compare
Ga0059261_3371 -0.5 -1.0 hypothetical protein compare
Ga0059261_4209 -0.5 -3.8 Transglycosylase SLT domain compare
Ga0059261_1547 -0.5 -2.5 Uncharacterized protein required for cytochrome oxidase assembly compare
Ga0059261_1387 -0.5 -2.8 Rhodanese-related sulfurtransferase compare
Ga0059261_3966 -0.5 -1.3 Transcriptional regulators compare
Ga0059261_3191 -0.5 -2.0 Glycosyltransferases involved in cell wall biogenesis compare
Ga0059261_1285 -0.5 -2.7 Uncharacterized conserved protein compare
Ga0059261_2166 -0.5 -3.6 Predicted acyl-CoA transferases/carnitine dehydratase compare
Ga0059261_2213 -0.4 -2.2 Domain of unknown function (DUF3576) compare
Ga0059261_1600 -0.4 -1.4 Domain of unknown function (DUF4167) compare
Ga0059261_0214 -0.4 -3.8 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Ga0059261_2295 -0.4 -1.5 DUF218 domain compare
Ga0059261_2034 -0.4 -3.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_3038 -0.4 -1.9 hypothetical protein compare
Ga0059261_2021 -0.4 -3.5 Protein of unknown function (DUF2029) compare
Ga0059261_2529 -0.4 -2.3 Predicted integral membrane protein compare
Ga0059261_1500 -0.4 -1.6 phosphoadenylylsulfate reductase (thioredoxin) (EC 1.8.4.8) compare
Ga0059261_2970 -0.4 -3.2 PAS domain S-box compare
Ga0059261_1075 -0.4 -0.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_3615 -0.4 -0.7 hypothetical protein compare
Ga0059261_3520 -0.4 -2.9 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Ga0059261_3937 -0.4 -3.2 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_3786 -0.4 -2.1 Malic enzyme compare
Ga0059261_3190 -0.4 -3.5 3-isopropylmalate dehydrogenase compare
Ga0059261_3612 -0.4 -3.0 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_3882 -0.4 -1.4 dimethyladenosine transferase (EC 2.1.1.-) compare
Ga0059261_3685 -0.4 -2.4 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_1370 -0.4 -2.2 Signal transduction histidine kinase compare
Ga0059261_3622 -0.4 -1.8 hypothetical protein compare
Ga0059261_1078 -0.4 -1.0 Response regulator receiver domain compare


Specific Phenotypes

For 1 genes in this experiment

For stress Cobalt chloride hexahydrate in Sphingomonas koreensis DSMZ 15582

For stress Cobalt chloride hexahydrate across organisms