Experiment set3IT088 for Dyella japonica UNC79MFTsu3.2

Compare to:

L-Proline nitrogen source

200 most important genes:

  gene name fitness t score description  
ABZR86_RS08340 -6.9 -6.7 adenylosuccinate synthase compare
ABZR86_RS09635 -6.1 -5.1 phosphoglycerate dehydrogenase compare
ABZR86_RS14100 -5.1 -8.6 DNA adenine methylase compare
ABZR86_RS05690 -4.7 -1.9 RnfH family protein compare
ABZR86_RS12885 -4.5 -3.1 magnesium-translocating P-type ATPase compare
ABZR86_RS10830 -4.4 -3.8 Holliday junction branch migration DNA helicase RuvB compare
ABZR86_RS12070 -4.2 -5.7 anthranilate phosphoribosyltransferase compare
ABZR86_RS09885 -4.2 -2.9 trypsin-like peptidase domain-containing protein compare
ABZR86_RS10715 -3.8 -12.6 serine hydroxymethyltransferase compare
ABZR86_RS08700 -3.7 -7.3 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
ABZR86_RS15980 -3.7 -3.5 homoserine kinase (EC 2.7.1.39) (from data) compare
ABZR86_RS02815 -3.5 -14.0 asparagine synthase B compare
ABZR86_RS02220 -3.4 -13.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR86_RS15460 -3.4 -3.1 type I glutamate--ammonia ligase compare
ABZR86_RS10480 -3.4 -4.2 3-dehydroquinate synthase compare
ABZR86_RS08000 -3.3 -13.1 tryptophan synthase subunit beta compare
ABZR86_RS08040 -3.2 -6.6 chorismate synthase compare
ABZR86_RS08730 -3.2 -8.8 N-acetylornithine carbamoyltransferase compare
ABZR86_RS08705 -3.2 -8.6 N-acetylglutamate synthase; N-acetylglutamate kinase (EC 2.3.1.1; EC 2.7.2.8) (from data) compare
ABZR86_RS08710 -3.1 -6.4 N-acetylcitrulline deacetylase (EC 3.5.1.-) (from data) compare
ABZR86_RS14700 -3.1 -6.6 glucose-6-phosphate dehydrogenase compare
ABZR86_RS20980 -3.1 -3.4 hypothetical protein compare
ABZR86_RS10215 -3.1 -5.9 inositol monophosphatase family protein compare
ABZR86_RS00685 -3.0 -2.4 carbon storage regulator CsrA compare
ABZR86_RS02225 -3.0 -6.5 prephenate dehydratase compare
ABZR86_RS06710 -2.9 -5.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABZR86_RS12215 -2.9 -4.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABZR86_RS08010 -2.8 -7.4 phosphoribosylanthranilate isomerase compare
ABZR86_RS02230 -2.8 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR86_RS19725 -2.8 -12.3 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR86_RS00830 -2.8 -9.1 glucose-6-phosphate isomerase compare
ABZR86_RS05995 -2.7 -14.6 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
ABZR86_RS08715 -2.7 -10.4 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
ABZR86_RS06275 -2.7 -3.1 DUF6165 family protein compare
ABZR86_RS08695 -2.7 -9.1 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
ABZR86_RS19865 -2.6 -4.3 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS15945 -2.6 -3.8 dihydroxy-acid dehydratase compare
ABZR86_RS05875 -2.6 -6.5 cysteine synthase A compare
ABZR86_RS11570 -2.6 -8.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR86_RS15950 -2.6 -5.7 3-isopropylmalate dehydrogenase compare
ABZR86_RS15960 -2.6 -9.9 3-isopropylmalate dehydratase large subunit compare
ABZR86_RS17180 -2.5 -8.7 glycosyltransferase compare
ABZR86_RS10475 -2.5 -5.8 shikimate kinase compare
ABZR86_RS15940 -2.5 -8.0 ketol-acid reductoisomerase compare
ABZR86_RS14985 -2.5 -10.7 shikimate dehydrogenase compare
ABZR86_RS14690 -2.5 -5.2 phosphogluconate dehydratase compare
ABZR86_RS12065 -2.5 -5.6 indole-3-glycerol phosphate synthase TrpC compare
ABZR86_RS15955 -2.4 -6.1 3-isopropylmalate dehydratase small subunit compare
ABZR86_RS06720 -2.4 -4.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABZR86_RS15935 -2.4 -10.7 biosynthetic-type acetolactate synthase large subunit compare
ABZR86_RS15315 -2.4 -10.0 phenylalanine 4-monooxygenase compare
ABZR86_RS06000 -2.3 -4.2 poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABZR86_RS15975 -2.3 -9.1 threonine synthase (EC 4.2.3.1) (from data) compare
ABZR86_RS06730 -2.3 -5.9 histidinol dehydrogenase compare
ABZR86_RS09845 -2.3 -10.5 DUF1631 domain-containing protein compare
ABZR86_RS07665 -2.3 -4.3 exodeoxyribonuclease V subunit beta compare
ABZR86_RS19030 -2.3 -7.0 cystathionine gamma-synthase compare
ABZR86_RS06260 -2.3 -6.3 MBL fold metallo-hydrolase compare
ABZR86_RS19025 -2.3 -3.9 homoserine O-succinyltransferase compare
ABZR86_RS08250 -2.3 -1.9 phosphate signaling complex protein PhoU compare
ABZR86_RS06715 -2.2 -5.5 imidazole glycerol phosphate synthase subunit HisH compare
ABZR86_RS19800 -2.1 -8.7 RNase adapter RapZ compare
ABZR86_RS15515 -2.1 -4.8 nitrogen regulation protein NR(I) compare
ABZR86_RS17085 -2.1 -4.8 type II 3-dehydroquinate dehydratase compare
ABZR86_RS07180 -2.0 -4.5 RNA polymerase sigma factor RpoE compare
ABZR86_RS12180 -1.9 -12.2 anthranilate synthase component I compare
ABZR86_RS18655 -1.9 -6.6 transketolase compare
ABZR86_RS13920 -1.9 -9.8 CDP-glycerol glycerophosphotransferase family protein compare
ABZR86_RS13850 -1.9 -5.6 phosphoribosylamine--glycine ligase compare
ABZR86_RS15970 -1.9 -6.9 2-isopropylmalate synthase compare
ABZR86_RS21575 -1.9 -5.5 [protein-PII] uridylyltransferase compare
ABZR86_RS15965 -1.8 -6.1 branched-chain amino acid transaminase compare
ABZR86_RS19235 -1.8 -3.7 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS06705 -1.7 -5.5 imidazole glycerol phosphate synthase subunit HisF compare
ABZR86_RS13915 -1.7 -8.5 glycosyltransferase family 2 protein compare
ABZR86_RS15640 -1.7 -1.8 orotate phosphoribosyltransferase compare
ABZR86_RS06700 -1.7 -4.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABZR86_RS06735 -1.6 -6.0 ATP phosphoribosyltransferase compare
ABZR86_RS10530 -1.6 -1.5 H-NS histone family protein compare
ABZR86_RS06725 -1.6 -5.3 histidinol-phosphate transaminase compare
ABZR86_RS12780 -1.6 -6.1 pteridine reductase compare
ABZR86_RS07340 -1.5 -2.8 tRNA-Leu compare
ABZR86_RS13905 -1.5 -8.0 glycosyltransferase family 1 protein compare
ABZR86_RS11485 -1.5 -4.6 hypothetical protein compare
ABZR86_RS19560 -1.5 -3.0 aspartate kinase / diaminopimelate decarboxylase (EC 4.1.1.20; EC 2.7.2.4) (from data) compare
ABZR86_RS06740 -1.5 -2.4 YerC/YecD family TrpR-related protein compare
ABZR86_RS06775 -1.5 -9.7 amidophosphoribosyltransferase compare
ABZR86_RS05885 -1.4 -5.5 LysR substrate-binding domain-containing protein compare
ABZR86_RS12940 -1.4 -9.3 bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA compare
ABZR86_RS19225 -1.4 -3.2 site-specific tyrosine recombinase XerD compare
ABZR86_RS07560 -1.4 -6.1 NAD-glutamate dehydrogenase domain-containing protein compare
ABZR86_RS07995 -1.4 -5.6 tryptophan synthase subunit alpha compare
ABZR86_RS10840 -1.4 -3.2 Holliday junction branch migration protein RuvA compare
ABZR86_RS16490 -1.4 -6.9 amino acid aminotransferase compare
ABZR86_RS12435 -1.4 -7.6 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS12005 -1.3 -0.7 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS06270 -1.3 -4.0 glycosyltransferase family 9 protein compare
ABZR86_RS03035 -1.3 -1.3 CBS domain-containing protein compare
ABZR86_RS11825 -1.3 -1.3 citrate synthase compare
ABZR86_RS02305 -1.2 -2.6 hypothetical protein compare
ABZR86_RS13880 -1.2 -1.7 peptide deformylase compare
ABZR86_RS19815 -1.2 -7.2 RNA polymerase factor sigma-54 compare
ABZR86_RS05900 -1.2 -6.0 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABZR86_RS15695 -1.2 -1.0 23S ribosomal RNA compare
ABZR86_RS13575 -1.2 -1.4 phosphopantetheine-binding protein compare
ABZR86_RS18715 -1.2 -4.8 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABZR86_RS18805 -1.1 -2.0 hypothetical protein compare
ABZR86_RS19860 -1.1 -6.3 phosphoribosylglycinamide formyltransferase compare
ABZR86_RS05905 -1.1 -3.8 assimilatory sulfite reductase (NADPH) flavoprotein subunit compare
ABZR86_RS13910 -1.1 -7.6 glycosyltransferase compare
ABZR86_RS07660 -1.1 -4.6 exodeoxyribonuclease V subunit gamma compare
ABZR86_RS20775 -1.1 -3.1 TetR/AcrR family transcriptional regulator compare
ABZR86_RS05890 -1.1 -5.8 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase compare
ABZR86_RS12410 -1.1 -2.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABZR86_RS20560 -1.0 -2.2 hypothetical protein compare
ABZR86_RS20700 -1.0 -1.1 transcriptional repressor AgaR compare
ABZR86_RS09660 -1.0 -1.6 MerR family transcriptional regulator compare
ABZR86_RS06190 -1.0 -1.3 YceD family protein compare
ABZR86_RS21335 -1.0 -0.9 response regulator transcription factor compare
ABZR86_RS00570 -1.0 -2.2 acetoacetyl-CoA reductase compare
ABZR86_RS05545 -1.0 -5.2 glycosyltransferase family 4 protein compare
ABZR86_RS15985 -1.0 -3.5 homoserine dehydrogenase compare
ABZR86_RS15020 -0.9 -1.5 DUF484 family protein compare
ABZR86_RS21020 -0.9 -5.0 ATP-binding protein compare
ABZR86_RS09840 -0.9 -0.8 Trm112 family protein compare
ABZR86_RS05540 -0.9 -4.5 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABZR86_RS12200 -0.9 -3.3 ribulose-phosphate 3-epimerase compare
ABZR86_RS13900 -0.9 -3.9 glycosyltransferase compare
ABZR86_RS15025 -0.9 -2.5 tyrosine recombinase XerC compare
ABZR86_RS09265 -0.9 -6.1 hypothetical protein compare
ABZR86_RS13515 -0.9 -2.8 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
ABZR86_RS01885 -0.9 -0.9 DUF5668 domain-containing protein compare
ABZR86_RS13055 -0.9 -5.4 glucokinase compare
ABZR86_RS02885 -0.9 -4.5 sulfate ABC transporter permease subunit CysT compare
ABZR86_RS18450 -0.9 -1.8 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
ABZR86_RS12045 -0.8 -5.5 cAMP-activated global transcriptional regulator CRP compare
ABZR86_RS18830 -0.8 -2.9 electron transfer flavoprotein-ubiquinone oxidoreductase compare
ABZR86_RS12280 -0.8 -1.2 dihydrolipoyl dehydrogenase compare
ABZR86_RS10205 -0.8 -2.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABZR86_RS18775 -0.8 -0.7 nucleotidyltransferase family protein compare
ABZR86_RS08435 -0.8 -2.2 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR86_RS01730 -0.8 -1.1 DUF3820 family protein compare
ABZR86_RS11720 -0.8 -1.3 ABC transporter ATP-binding protein compare
ABZR86_RS07585 -0.8 -4.7 homocysteine S-methyltransferase family protein compare
ABZR86_RS05550 -0.7 -1.8 lipopolysaccharide assembly protein LapB compare
ABZR86_RS18725 -0.7 -1.8 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR86_RS04920 -0.7 -1.0 pentapeptide repeat-containing protein compare
ABZR86_RS14270 -0.7 -3.5 isochorismatase family protein compare
ABZR86_RS01755 -0.7 -2.7 helix-turn-helix domain-containing protein compare
ABZR86_RS02545 -0.7 -1.6 Ref family recombination enhancement nuclease compare
ABZR86_RS04835 -0.7 -2.4 hypothetical protein compare
ABZR86_RS07105 -0.7 -1.1 hypoxanthine-guanine phosphoribosyltransferase compare
ABZR86_RS05820 -0.7 -2.7 GntR family transcriptional regulator compare
ABZR86_RS10440 -0.7 -2.7 secondary thiamine-phosphate synthase enzyme YjbQ compare
ABZR86_RS12915 -0.7 -1.3 twin transmembrane helix small protein compare
ABZR86_RS15740 -0.7 -5.7 DUF1481 domain-containing protein compare
ABZR86_RS10340 -0.7 -1.1 chemotaxis protein CheB compare
ABZR86_RS20180 -0.7 -1.3 FliH/SctL family protein compare
ABZR86_RS15510 -0.7 -1.8 ATP-binding protein compare
ABZR86_RS07320 -0.7 -4.8 endopeptidase La compare
ABZR86_RS00660 -0.7 -1.9 recombinase RecA compare
ABZR86_RS16745 -0.7 -1.3 hypothetical protein compare
ABZR86_RS19075 -0.7 -1.4 YceI family protein compare
ABZR86_RS18585 -0.7 -2.3 polysaccharide biosynthesis/export family protein compare
ABZR86_RS14800 -0.7 -4.7 MASE1 domain-containing protein compare
ABZR86_RS07590 -0.7 -5.1 methionine synthase compare
ABZR86_RS11655 -0.7 -2.6 SLC13 family permease compare
ABZR86_RS10315 -0.6 -2.1 Imm42 family immunity protein compare
ABZR86_RS10870 -0.6 -1.0 FmdB family zinc ribbon protein compare
ABZR86_RS09055 -0.6 -0.9 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
ABZR86_RS13180 -0.6 -1.5 K(+)-transporting ATPase subunit F compare
ABZR86_RS14965 -0.6 -1.8 hypothetical protein compare
ABZR86_RS18735 -0.6 -2.3 dTDP-glucose 4,6-dehydratase compare
ABZR86_RS09985 -0.6 -4.2 glycosyltransferase compare
ABZR86_RS00600 -0.6 -2.4 AEC family transporter compare
ABZR86_RS06690 -0.6 -2.2 acireductone synthase compare
ABZR86_RS20110 -0.6 -0.8 flagellar basal body P-ring protein FlgI compare
ABZR86_RS08480 -0.6 -2.5 methylisocitrate lyase compare
ABZR86_RS05895 -0.6 -3.6 phosphoadenylyl-sulfate reductase compare
ABZR86_RS00050 -0.6 -1.6 AraC family transcriptional regulator compare
ABZR86_RS19930 -0.6 -1.6 YbaL family putative K(+) efflux transporter compare
ABZR86_RS20340 -0.6 -0.7 nuclear transport factor 2 family protein compare
ABZR86_RS02890 -0.6 -2.4 sulfate ABC transporter permease subunit CysW compare
ABZR86_RS02795 -0.6 -0.9 phosphoglycerate mutase compare
ABZR86_RS10425 -0.6 -2.0 pyrroline-5-carboxylate reductase compare
ABZR86_RS07140 -0.6 -2.7 DNA repair protein RecO compare
ABZR86_RS01690 -0.6 -2.3 LacI family DNA-binding transcriptional regulator compare
ABZR86_RS02700 -0.6 -2.3 hypothetical protein compare
ABZR86_RS06630 -0.6 -1.7 phosphopyruvate hydratase compare
ABZR86_RS04495 -0.6 -0.6 hypothetical protein compare
ABZR86_RS17940 -0.6 -2.5 FUSC family protein compare
ABZR86_RS19520 -0.6 -1.6 (2Fe-2S)-binding protein compare
ABZR86_RS02200 -0.6 -4.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR86_RS21345 -0.6 -4.0 GNAT family N-acetyltransferase compare
ABZR86_RS10030 -0.5 -3.0 glycosyltransferase family 2 protein compare
ABZR86_RS18150 -0.5 -3.4 universal stress protein compare
ABZR86_RS02900 -0.5 -3.5 MASE1 domain-containing protein compare
ABZR86_RS03500 -0.5 -4.3 TonB-dependent siderophore receptor compare
ABZR86_RS07900 -0.5 -1.6 transcriptional repressor compare
ABZR86_RS16540 -0.5 -1.3 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source L-Proline in Dyella japonica UNC79MFTsu3.2

For nitrogen source L-Proline across organisms