Experiment set3IT088 for Caulobacter crescentus NA1000

Compare to:

PYE with Paraquat dichloride 0.03 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
CCNA_02037 +6.1 39.9 ATP-dependent endopeptidase Lon compare
CCNA_03858 +5.8 35.6 protein translocase subunit secB compare
CCNA_00011 +5.5 8.8 chaperone protein DnaJ compare
CCNA_00296 +4.9 35.4 phosphate regulon response regulator PhoB compare
CCNA_01525 +4.6 16.4 flagellar biosynthesis repressor flbT compare
CCNA_02030 +4.6 15.3 hypothetical protein compare
CCNA_00389 +4.4 8.9 aminomethyltransferase family protein compare
CCNA_01059 +4.2 15.5 S-layer protein rsaA compare
CCNA_02028 +4.2 14.4 NTF2 superfamily protein compare
CCNA_02328 +4.1 2.6 cell cycle regulatory protein GcrA compare
CCNA_01583 +4.0 8.9 phosphate-binding protein compare
CCNA_01815 +3.8 25.3 nitrogen assimilation regulatory protein NtrC compare
CCNA_02448 +3.8 20.9 hypothetical protein compare
CCNA_02026 +3.7 21.8 hypothetical protein compare
CCNA_02447 +3.5 20.6 PspA/IM30 family regulatory protein compare
CCNA_01061 +3.4 14.9 type I secretion adaptor protein RsaE compare
CCNA_02552 +3.4 10.0 ATP-dependent Clp protease adaptor protein ClpS compare
CCNA_01060 +3.3 16.2 type I protein secretion ATP-binding protein RsaD compare
CCNA_00013 +3.3 28.0 protein-PII uridylyltransferase compare
CCNA_01237 +3.2 1.9 hypothetical protein compare
CCNA_02553 +3.2 22.3 ATP-dependent clp protease ATP-binding subunit ClpA compare
CCNA_00497 +3.2 17.7 putative rhamnosyl transferase compare
CCNA_03643 +3.2 6.9 succinate dehydrogenase membrane anchor subunit compare
CCNA_00292 +3.1 7.1 phosphate transport system permease protein pstC compare
CCNA_03689 +3.1 14.7 alanine dehydrogenase compare
CCNA_01199 +3.1 17.1 glucose-1-phosphate thymidylyltransferase compare
CCNA_02576 +3.1 19.7 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_02000 +3.0 8.6 SSU ribosomal protein S2P compare
CCNA_02419 +3.0 10.3 TonB1 protein compare
CCNA_02242 +3.0 18.2 PHB granule-associated protein, phasin2 compare
CCNA_01553 +3.0 14.5 undecaprenyl-phosphate beta-N-acetyl-D-fucosaminephosphotransferase compare
CCNA_00846 +3.0 23.6 proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase compare
CCNA_03824 +2.9 18.0 2-polyprenylphenol 6-hydroxylase accessory protein UbiB compare
CCNA_02957 +2.9 13.3 ArsR-family transcriptional regulator compare
CCNA_00769 +2.8 12.2 TetR family transcriptional regulator compare
CCNA_02387 +2.8 22.1 glutathione reductase compare
CCNA_00756 +2.8 4.8 hypothetical protein compare
CCNA_01968 +2.8 9.6 pentapeptide repeats containing protein compare
CCNA_02225 +2.7 16.4 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_03961 +2.7 10.5 hypothetical protein compare
CCNA_01780 +2.7 18.5 exopolyphosphatase compare
CCNA_01453 +2.7 10.6 electron transport complex I subunit, NADH-ubiquinone oxidoreductase compare
CCNA_01814 +2.7 16.5 nitrogen regulation protein ntrB compare
CCNA_03681 +2.6 15.3 ABC transporter ATP-binding protein compare
CCNA_03808 +2.6 17.5 organic solvent resistance transport system Ttg2C protein compare
CCNA_03043 +2.6 8.1 type IV pilin protein pilA compare
CCNA_01181 +2.6 13.1 hypothetical protein compare
CCNA_03863 +2.6 6.6 hypothetical protein compare
CCNA_03612 +2.6 16.0 HTH XRE-family transcriptional regulator compare
CCNA_03271 +2.6 17.7 methionine gamma-lyase compare
CCNA_00264 +2.6 13.3 C4-dicarboxylate transport protein compare
CCNA_02324 +2.6 12.5 heat shock protein 33 hsp33 compare
CCNA_02339 +2.6 15.5 methyltransferase compare
CCNA_02575 +2.5 6.6 hypothetical protein compare
CCNA_02732 +2.5 4.1 hypothetical protein compare
CCNA_01763 +2.5 14.3 multifunctional aminopeptidase compare
CCNA_00872 +2.5 6.8 glutaredoxin compare
CCNA_01712 +2.5 19.4 CopY/TcrY family transcriptional repressor compare
CCNA_02980 +2.5 15.7 tryptophan 2,3-dioxygenase compare
CCNA_01058 +2.5 17.2 helix-turn-helix transcriptional regulator compare
CCNA_00161 +2.5 20.0 hypothetical protein compare
CCNA_00392 +2.5 16.5 dihydroorotase compare
CCNA_01086 +2.5 14.9 GTP-binding protein lepA compare
CCNA_01242 +2.5 16.1 amino acid permease compare
CCNA_01851 +2.4 19.8 quinol cytochrome oxidase polypeptide II compare
CCNA_03062 +2.4 14.4 cell wall hydrolase family protein compare
CCNA_02646 +2.4 5.2 cell division protein MraZ compare
CCNA_02081 +2.4 9.0 Sec-independent protein translocase protein tatB compare
CCNA_00215 +2.4 12.5 SapC surface layer protein compare
CCNA_02025 +2.4 7.9 hypothetical protein compare
CCNA_02021 +2.4 8.3 hypothetical protein compare
CCNA_02103 +2.4 18.4 hypothetical protein compare
CCNA_03680 +2.4 20.3 aminopeptidase N compare
CCNA_02619 +2.4 15.7 stomatin/prohibitin-related protein compare
CCNA_01393 +2.4 16.1 soluble lytic murein transglycosylase compare
CCNA_00699 +2.3 14.1 LSU ribosomal protein L28P compare
CCNA_01506 +2.3 12.2 cystine transport ATP-binding protein compare
CCNA_01295 +2.3 13.9 integral membrane protein compare
CCNA_03129 +2.3 14.9 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_00072 +2.3 14.8 hypothetical protein compare
CCNA_00073 +2.3 16.2 HemY domain membrane protein compare
CCNA_01964 +2.3 9.8 NADH dehydrogenase compare
CCNA_00562 +2.3 15.4 dihydroorotate dehydrogenase compare
CCNA_03807 +2.3 12.5 organic solvent resistance transport system Ttg2D protein compare
CCNA_00189 +2.2 4.9 zinc-finger domain protein compare
CCNA_01508 +2.2 9.7 cystine-binding protein compare
CCNA_03108 +2.2 17.4 TonB-dependent outer membrane receptor compare
CCNA_02171 +2.2 14.4 nucleoside permease nupC compare
CCNA_03064 +2.2 8.2 PadR-family transcriptional regulator compare
CCNA_01624 +2.2 5.8 orotate phosphoribosyltransferase compare
CCNA_00781 +2.2 15.2 two-component receiver protein CpdR compare
CCNA_00924 +2.2 12.6 MarR/EmrR family transcriptional regulator compare
CCNA_00920 +2.2 5.5 hypothetical protein compare
CCNA_00512 +2.1 8.7 GTP-binding protein, probable translation factor compare
CCNA_00162 +2.1 10.9 hypothetical protein compare
CCNA_00518 +2.1 10.0 LSU ribosomal protein L25P compare
CCNA_03557 +2.1 7.8 hypothetical protein compare
CCNA_00521 +2.1 5.0 antitoxin protein compare
CCNA_03252 +2.1 16.6 CopY/TcrY-family transcriptional regulator compare
CCNA_00079 +2.1 7.3 MerR-family transcriptional regulator compare
CCNA_02199 +2.1 16.2 methyltransferase compare
CCNA_01643 +2.1 10.1 arginine-tRNA-protein transferase compare
CCNA_01751 +2.1 8.2 aminodeoxychorismate lyase compare
CCNA_03280 +2.0 17.7 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_01995 +2.0 3.7 phosphatidate cytidylyltransferase compare
CCNA_03806 +2.0 12.8 outer membrane lipoprotein compare
CCNA_02287 +2.0 11.0 TetR-family transcriptional regulator compare
CCNA_03316 +2.0 13.3 UDP-N-acetylglucosamine 4,6-dehydratase/UDP-D-quinovosamine 4-dehydrogenase compare
CCNA_01526 +2.0 8.5 flagellar biosynthesis regulatory protein flaF compare
CCNA_03289 +2.0 8.4 HicB-family RNA-binding protein compare
CCNA_01164 +2.0 12.6 O-linked N-acetylglucosamine transferase compare
CCNA_03325 +2.0 9.0 hypothetical protein compare
CCNA_01931 +2.0 13.2 TetR-family transcriptional regulator compare
CCNA_01507 +2.0 7.1 cystine transport system permease protein compare
CCNA_01979 +2.0 5.4 LexA repressor compare
CCNA_00153 +2.0 5.1 adenine nucleotide exchange factor GrpE compare
CCNA_R0037 +2.0 5.0 tRNA-Glu compare
CCNA_03740 +2.0 8.3 cysteine synthase compare
CCNA_00255 +2.0 3.9 esterase compare
CCNA_03989 +1.9 15.0 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_03519 +1.9 10.3 PadR-family transcriptional regulator compare
CCNA_03805 +1.9 9.4 PadR-family transcriptional regulator compare
CCNA_03936 +1.9 6.7 hypothetical protein compare
CCNA_00078 +1.9 14.3 acyl-CoA dehydrogenase compare
CCNA_02866 +1.9 7.2 hypothetical protein compare
CCNA_03205 +1.9 13.0 M28-family zinc peptidase compare
CCNA_01840 +1.9 14.0 MerR-family transcriptional regulator compare
CCNA_03524 +1.9 9.2 di-/tripeptide transporter compare
CCNA_01361 +1.9 5.5 PepSY superfamily protein compare
CCNA_02941 +1.9 6.8 transcription elongation factor greA compare
CCNA_03810 +1.8 11.3 organic solvent resistance transport system ATP-binding protein compare
CCNA_02416 +1.8 10.9 DNA-binding protein HU compare
CCNA_01801 +1.8 7.8 hypothetical protein compare
CCNA_00324 +1.8 3.3 ExbD-family protein compare
CCNA_01593 +1.8 10.6 Xaa-pro aminopeptidase compare
CCNA_03479 +1.8 11.4 MarR-family transcriptional regulator compare
CCNA_02567 +1.8 12.5 sensory transduction histidine kinase pleC compare
CCNA_02073 +1.8 7.8 cupin domain transcriptional regulator compare
CCNA_02330 +1.8 8.5 hypothetical protein compare
CCNA_03748 +1.8 9.9 dTDP-4-dehydrorhamnose 3,5-epimerase compare
CCNA_01175 +1.8 7.1 uroporphyrin-III C-methyltransferase compare
CCNA_00999 +1.8 8.0 PAS-family motility and cell cycle regulatory protein MopJ compare
CCNA_03464 +1.8 6.7 glycine cleavage system H protein compare
CCNA_00459 +1.8 10.3 Na+/H+ antiporter nhaA compare
CCNA_02614 +1.8 9.8 fumarylacetoacetase superfamily protein compare
CCNA_01826 +1.7 9.4 vitamin B12 receptor compare
CCNA_01918 +1.7 9.9 cyclic di-GMP effector protein PopA compare
CCNA_00149 +1.7 4.7 Cro/CI-family transcriptional regulator compare
CCNA_00505 +1.7 9.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
CCNA_03614 +1.7 7.4 hypothetical protein compare
CCNA_00291 +1.7 10.5 phosphate regulon sensor protein phoR compare
CCNA_01008 +1.7 12.1 urocanate hydratase compare
CCNA_02644 +1.7 5.2 cell division protein FtsL compare
CCNA_02617 +1.7 14.0 histidinol-phosphate aminotransferase compare
CCNA_00527 +1.7 10.5 hypothetical protein compare
CCNA_01573 +1.7 8.4 ArsR-family transcriptional regulator compare
CCNA_03287 +1.7 10.5 PadR-family transcriptional regulator compare
CCNA_01186 +1.7 7.4 hypothetical protein compare
CCNA_03223 +1.7 9.6 TetR-family transcriptional regulator conserved
CCNA_03744 +1.7 10.7 dTDP-glucose 4,6-dehydratase compare
CCNA_00939 +1.7 6.9 MarR-family transcriptional regulator compare
CCNA_03955 +1.7 2.2 hypothetical protein compare
CCNA_03123 +1.7 10.8 ArsR-family transcriptional regulator compare
CCNA_01949 +1.7 9.0 bactofilin A BacA compare
CCNA_03012 +1.6 7.8 peroxiredoxin compare
CCNA_03105 +1.6 8.9 DnaJ domain protein compare
CCNA_02004 +1.6 3.8 SOS-induced inhibitor of cell division SidA compare
CCNA_01913 +1.6 10.5 MarR-family transcriptional regulator compare
CCNA_01193 +1.6 12.2 amylosucrase compare
CCNA_00210 +1.6 13.1 TonB-dependent receptor compare
CCNA_02591 +1.6 7.9 glutaredoxin compare
CCNA_01619 +1.6 8.5 NYN domain protein compare
CCNA_00752 +1.6 9.4 3-hydroxybutyryl-CoA dehydrogenase compare
CCNA_01094 +1.6 6.6 hypothetical protein compare
CCNA_01850 +1.6 12.3 quinol cytochrome oxidase polypeptide I compare
CCNA_00150 +1.6 9.1 PDZ domain family protein compare
CCNA_01849 +1.6 9.6 quinol cytochrome oxidase polypeptide III compare
CCNA_00834 +1.6 7.4 flagellin FljM compare
CCNA_02243 +1.6 11.3 D-alanyl-D-alanine serine-type carboxypeptidase compare
CCNA_01959 +1.6 3.8 3-dehydroquinate dehydratase compare
CCNA_00368 +1.6 10.5 phosphonates transport system permease protein phnE compare
CCNA_03215 +1.6 11.1 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_01655 +1.6 8.3 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_03030 +1.6 7.5 cytochrome c2 compare
CCNA_01176 +1.5 2.4 hypothetical protein compare
CCNA_03372 +1.5 5.5 bacterioferritin-associated ferredoxin compare
CCNA_00950 +1.5 11.7 flagellar M-ring protein FliF compare
CCNA_03970 +1.5 1.6 hypothetical protein compare
CCNA_01062 +1.5 10.6 GDP-mannose 4,6 dehydratase compare
CCNA_03136 +1.5 6.2 flagellar export protein FliJ compare
CCNA_02467 +1.5 9.9 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_03089 +1.5 9.5 hypothetical protein compare
CCNA_03959 +1.5 1.5 hypothetical protein compare
CCNA_02616 +1.5 10.6 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_00447 +1.5 8.6 chemotaxis protein cheD compare
CCNA_00032 +1.5 6.1 antitoxin protein VapB compare
CCNA_03832 +1.5 6.9 TetR-family transcriptional regulator compare
CCNA_01804 +1.5 10.0 glutathione peroxidase compare
CCNA_00847 +1.5 8.3 leucine-responsive regulatory protein compare
CCNA_02379 +1.5 8.4 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For stress Paraquat dichloride in Caulobacter crescentus NA1000

For stress Paraquat dichloride across organisms