Experiment set3IT087 for Pseudomonas fluorescens FW300-N2E2

Compare to:

inner cut, LB soft agar motility assay

Genes with specific phenotypes:

  gene name fitness t score description  
Pf6N2E2_2622 -5.8 -5.6 Flagellar hook-associated protein FlgL conserved
Pf6N2E2_2602 -5.7 -6.8 Flagellin protein FlaA compare
Pf6N2E2_2575 -5.6 -7.7 Flagellar biosynthesis protein FlhF compare
Pf6N2E2_2623 -5.4 -10.9 Flagellar hook-associated protein FlgK conserved
Pf6N2E2_5589 -5.2 -7.9 Sodium-type flagellar protein motY precursor conserved
Pf6N2E2_2710 -5.1 -5.6 FIG00953701: hypothetical protein compare
Pf6N2E2_2563 -4.9 -15.2 FIG00953562: hypothetical protein compare
Pf6N2E2_2585 -4.9 -7.6 Flagellar hook-length control protein FliK conserved
Pf6N2E2_5689 -4.9 -5.3 Flagellar biosynthesis protein FlgN compare
Pf6N2E2_2570 -4.6 -7.1 Signal transduction histidine kinase CheA (EC 2.7.3.-) conserved
Pf6N2E2_2564 -4.4 -6.2 Positive regulator of CheA protein activity (CheW) conserved
Pf6N2E2_2565 -4.3 -11.5 CheW domain protein conserved
Pf6N2E2_2569 -4.2 -8.5 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) conserved
Pf6N2E2_2599 -4.1 -7.7 Flagellar biosynthesis protein FliS conserved
Pf6N2E2_69 -4.0 -7.4 Probable type IV pilus assembly FimV-related transmembrane protein conserved
Pf6N2E2_5129 -4.0 -15.9 ClpB protein conserved
Pf6N2E2_2568 -3.8 -6.4 Flagellar motor rotation protein MotA conserved
Pf6N2E2_5893 -3.8 -8.3 FIG00956448: hypothetical protein conserved
Pf6N2E2_2600 -3.8 -11.8 Flagellar hook-associated protein FliD conserved
Pf6N2E2_5693 -3.5 -8.3 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) conserved
Pf6N2E2_5963 -3.2 -5.8 lipoprotein, putative conserved
Pf6N2E2_2303 -3.1 -6.1 Aerotaxis receptor Aer conserved
Pf6N2E2_5186 -3.0 -8.8 FIG00954491: hypothetical protein conserved
Pf6N2E2_2566 -2.9 -5.4 Chromosome (plasmid) partitioning protein ParA conserved
Pf6N2E2_5390 -2.7 -8.6 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf6N2E2_5184 -2.7 -9.5 Chromosome segregation ATPases conserved
Pf6N2E2_3906 -2.3 -8.5 Transcription accessory protein (S1 RNA-binding domain) conserved
Pf6N2E2_4809 -2.3 -10.9 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases compare
Pf6N2E2_582 -2.0 -5.3 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) compare
Pf6N2E2_3433 -1.9 -5.6 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf6N2E2_2596 -1.9 -5.7 Flagellar sensor histidine kinase FleS conserved
Pf6N2E2_2763 -1.8 -7.5 Predicted signal transduction protein conserved
Pf6N2E2_5685 -1.8 -5.9 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf6N2E2_584 -1.7 -7.9 ABC transporter, periplasmic substrate-binding protein conserved
Pf6N2E2_2595 -1.7 -6.0 Flagellar regulatory protein FleQ conserved
Pf6N2E2_2305 -1.5 -6.4 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_2030 -1.3 -6.9 ABC transporter, periplasmic substrate-binding protein compare
Pf6N2E2_5684 -1.3 -5.4 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_2032 -1.2 -5.1 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) compare
Pf6N2E2_3345 -1.1 -5.3 Thymidine phosphorylase (EC 2.4.2.4) compare
Pf6N2E2_2612 +1.1 6.8 O-antigen biosynthesis protein compare
Pf6N2E2_2621 +1.2 7.8 glycosyl transferase, group 2 family protein compare
Pf6N2E2_1678 +1.2 6.1 Major facilitator family transporter compare
Pf6N2E2_2587 +1.5 8.3 Serine phosphatase RsbU, regulator of sigma subunit conserved
Pf6N2E2_4926 +1.6 9.6 hypothetical protein compare
Pf6N2E2_5278 +1.6 8.7 Signal transduction histidine kinase compare
Pf6N2E2_4617 +1.8 9.8 Signal transduction histidine kinase CheA (EC 2.7.3.-) conserved
Pf6N2E2_816 +2.0 10.3 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf6N2E2_3871 +2.2 15.0 FIG00553872: hypothetical protein compare
Pf6N2E2_2601 +2.3 5.5 Flagellin protein FlaG conserved
Pf6N2E2_2329 +2.5 12.7 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) conserved
Pf6N2E2_818 +2.6 9.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_4616 +2.7 11.8 type IV pilus biogenesis protein PilJ conserved
Pf6N2E2_5873 +2.7 8.7 FIG00953467: hypothetical protein compare
Pf6N2E2_815 +2.8 14.3 Signal transduction histidine kinase compare
Pf6N2E2_5692 +2.8 6.6 Chemotaxis protein CheV (EC 2.7.3.-) conserved
Pf6N2E2_5872 +3.2 8.7 Sensor histidine kinase/response regulator compare
Pf6N2E2_3508 +4.1 27.9 Probable two-component response regulator conserved
Pf6N2E2_3827 +4.3 6.8 FIG00955429: hypothetical protein conserved


Specific phenotypes for motility Agar across organisms