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Experiment set3IT087 for
Pseudomonas fluorescens FW300-N2E2
Compare to:
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inner cut, LB soft agar motility assay
Genes with
specific
phenotypes:
gene
name
fitness
t score
description
Pf6N2E2
_2622
-5.8
-5.6
Flagellar hook-associated protein FlgL
conserved
Pf6N2E2
_2602
-5.7
-6.8
Flagellin protein FlaA
compare
Pf6N2E2
_2575
-5.6
-7.7
Flagellar biosynthesis protein FlhF
compare
Pf6N2E2
_2623
-5.4
-10.9
Flagellar hook-associated protein FlgK
conserved
Pf6N2E2
_5589
-5.2
-7.9
Sodium-type flagellar protein motY precursor
conserved
Pf6N2E2
_2710
-5.1
-5.6
FIG00953701: hypothetical protein
compare
Pf6N2E2
_2563
-4.9
-15.2
FIG00953562: hypothetical protein
compare
Pf6N2E2
_2585
-4.9
-7.6
Flagellar hook-length control protein FliK
conserved
Pf6N2E2
_5689
-4.9
-5.3
Flagellar biosynthesis protein FlgN
compare
Pf6N2E2
_2570
-4.6
-7.1
Signal transduction histidine kinase CheA (EC 2.7.3.-)
conserved
Pf6N2E2
_2564
-4.4
-6.2
Positive regulator of CheA protein activity (CheW)
conserved
Pf6N2E2
_2565
-4.3
-11.5
CheW domain protein
conserved
Pf6N2E2
_2569
-4.2
-8.5
Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61)
conserved
Pf6N2E2
_2599
-4.1
-7.7
Flagellar biosynthesis protein FliS
conserved
Pf6N2E2
_69
-4.0
-7.4
Probable type IV pilus assembly FimV-related transmembrane protein
conserved
Pf6N2E2
_5129
-4.0
-15.9
ClpB protein
conserved
Pf6N2E2
_2568
-3.8
-6.4
Flagellar motor rotation protein MotA
conserved
Pf6N2E2
_5893
-3.8
-8.3
FIG00956448: hypothetical protein
conserved
Pf6N2E2
_2600
-3.8
-11.8
Flagellar hook-associated protein FliD
conserved
Pf6N2E2
_5693
-3.5
-8.3
Chemotaxis protein methyltransferase CheR (EC 2.1.1.80)
conserved
Pf6N2E2
_5963
-3.2
-5.8
lipoprotein, putative
conserved
Pf6N2E2
_2303
-3.1
-6.1
Aerotaxis receptor Aer
conserved
Pf6N2E2
_5186
-3.0
-8.8
FIG00954491: hypothetical protein
conserved
Pf6N2E2
_2566
-2.9
-5.4
Chromosome (plasmid) partitioning protein ParA
conserved
Pf6N2E2
_5390
-2.7
-8.6
Uricase (urate oxidase) (EC 1.7.3.3)
compare
Pf6N2E2
_5184
-2.7
-9.5
Chromosome segregation ATPases
conserved
Pf6N2E2
_3906
-2.3
-8.5
Transcription accessory protein (S1 RNA-binding domain)
conserved
Pf6N2E2
_4809
-2.3
-10.9
COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases
compare
Pf6N2E2
_582
-2.0
-5.3
Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
compare
Pf6N2E2
_3433
-1.9
-5.6
Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)
compare
Pf6N2E2
_2596
-1.9
-5.7
Flagellar sensor histidine kinase FleS
conserved
Pf6N2E2
_2763
-1.8
-7.5
Predicted signal transduction protein
conserved
Pf6N2E2
_5685
-1.8
-5.9
Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-)
compare
Pf6N2E2
_584
-1.7
-7.9
ABC transporter, periplasmic substrate-binding protein
conserved
Pf6N2E2
_2595
-1.7
-6.0
Flagellar regulatory protein FleQ
conserved
Pf6N2E2
_2305
-1.5
-6.4
Cytochrome c oxidase subunit CcoN (EC 1.9.3.1)
compare
Pf6N2E2
_2030
-1.3
-6.9
ABC transporter, periplasmic substrate-binding protein
compare
Pf6N2E2
_5684
-1.3
-5.4
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY
compare
Pf6N2E2
_2032
-1.2
-5.1
Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1)
compare
Pf6N2E2
_3345
-1.1
-5.3
Thymidine phosphorylase (EC 2.4.2.4)
compare
Pf6N2E2
_2612
+1.1
6.8
O-antigen biosynthesis protein
compare
Pf6N2E2
_2621
+1.2
7.8
glycosyl transferase, group 2 family protein
compare
Pf6N2E2
_1678
+1.2
6.1
Major facilitator family transporter
compare
Pf6N2E2
_2587
+1.5
8.3
Serine phosphatase RsbU, regulator of sigma subunit
conserved
Pf6N2E2
_4926
+1.6
9.6
hypothetical protein
compare
Pf6N2E2
_5278
+1.6
8.7
Signal transduction histidine kinase
compare
Pf6N2E2
_4617
+1.8
9.8
Signal transduction histidine kinase CheA (EC 2.7.3.-)
conserved
Pf6N2E2
_816
+2.0
10.3
Chemotaxis protein methyltransferase CheR (EC 2.1.1.80)
compare
Pf6N2E2
_3871
+2.2
15.0
FIG00553872: hypothetical protein
compare
Pf6N2E2
_2601
+2.3
5.5
Flagellin protein FlaG
conserved
Pf6N2E2
_2329
+2.5
12.7
diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
conserved
Pf6N2E2
_818
+2.6
9.7
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY
compare
Pf6N2E2
_4616
+2.7
11.8
type IV pilus biogenesis protein PilJ
conserved
Pf6N2E2
_5873
+2.7
8.7
FIG00953467: hypothetical protein
compare
Pf6N2E2
_815
+2.8
14.3
Signal transduction histidine kinase
compare
Pf6N2E2
_5692
+2.8
6.6
Chemotaxis protein CheV (EC 2.7.3.-)
conserved
Pf6N2E2
_5872
+3.2
8.7
Sensor histidine kinase/response regulator
compare
Pf6N2E2
_3508
+4.1
27.9
Probable two-component response regulator
conserved
Pf6N2E2
_3827
+4.3
6.8
FIG00955429: hypothetical protein
conserved
Specific phenotypes for motility Agar across organisms