Experiment set3IT087 for Pseudomonas fluorescens FW300-N2E2

Compare to:

inner cut, LB soft agar motility assay

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2578 -6.7 -3.5 Flagellar biosynthesis protein FliR compare
Pf6N2E2_2627 -6.5 -4.5 Flagellar basal-body rod protein FlgG compare
Pf6N2E2_2625 -6.2 -4.3 Flagellar P-ring protein FlgI compare
Pf6N2E2_2597 -6.2 -9.4 Flagellar regulatory protein FleQ compare
Pf6N2E2_2624 -6.0 -4.1 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
Pf6N2E2_2582 -5.9 -3.7 Flagellar motor switch protein FliN compare
Pf6N2E2_5695 -5.9 -7.0 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_5694 -5.9 -4.1 Flagellar basal-body rod protein FlgB compare
Pf6N2E2_4710 -5.8 -3.1 hypothetical protein compare
Pf6N2E2_2622 -5.8 -5.6 Flagellar hook-associated protein FlgL conserved
Pf6N2E2_5006 -5.7 -5.6 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2602 -5.7 -6.8 Flagellin protein FlaA compare
Pf6N2E2_2575 -5.6 -7.7 Flagellar biosynthesis protein FlhF compare
Pf6N2E2_2590 -5.6 -8.6 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_2573 -5.5 -3.8 RNA polymerase sigma factor for flagellar operon conserved
Pf6N2E2_2317 -5.4 -3.8 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2628 -5.4 -5.3 Flagellar basal-body rod protein FlgF compare
Pf6N2E2_2592 -5.4 -5.3 Flagellar motor switch protein FliG compare
Pf6N2E2_2623 -5.4 -10.9 Flagellar hook-associated protein FlgK conserved
Pf6N2E2_75 -5.2 -4.4 Colicin V production protein compare
Pf6N2E2_2580 -5.2 -3.6 Flagellar biosynthesis protein FliP compare
Pf6N2E2_5589 -5.2 -7.9 Sodium-type flagellar protein motY precursor conserved
Pf6N2E2_2579 -5.2 -5.0 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_2626 -5.2 -10.1 Flagellar L-ring protein FlgH compare
Pf6N2E2_2572 -5.1 -3.0 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5691 -5.1 -9.0 Flagellar basal-body P-ring formation protein FlgA compare
Pf6N2E2_2710 -5.1 -5.6 FIG00953701: hypothetical protein compare
Pf6N2E2_156 -5.1 -2.6 Carbon storage regulator compare
Pf6N2E2_2583 -5.1 -7.5 Flagellar motor switch protein FliM compare
Pf6N2E2_4159 -5.0 -3.4 Cytochrome c4 compare
Pf6N2E2_2593 -5.0 -6.8 Flagellar M-ring protein FliF compare
Pf6N2E2_2563 -4.9 -15.2 FIG00953562: hypothetical protein compare
Pf6N2E2_2585 -4.9 -7.6 Flagellar hook-length control protein FliK conserved
Pf6N2E2_2577 -4.9 -6.7 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_5771 -4.9 -6.7 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_5430 -4.9 -7.5 Transglycosylase, Slt family compare
Pf6N2E2_5689 -4.9 -5.3 Flagellar biosynthesis protein FlgN compare
Pf6N2E2_5697 -4.8 -14.0 Flagellar hook protein FlgE compare
Pf6N2E2_5338 -4.7 -5.7 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2594 -4.7 -7.3 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_3791 -4.7 -6.4 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_445 -4.7 -5.6 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_4451 -4.7 -5.6 FIG139438: lipoprotein B compare
Pf6N2E2_2754 -4.7 -4.6 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_2823 -4.6 -3.2 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_2570 -4.6 -7.1 Signal transduction histidine kinase CheA (EC 2.7.3.-) conserved
Pf6N2E2_5252 -4.6 -2.4 FIG00956396: hypothetical protein compare
Pf6N2E2_4987 -4.6 -1.4 MaoC-like domain protein compare
Pf6N2E2_4181 -4.6 -1.4 Organic hydroperoxide resistance protein compare
Pf6N2E2_2320 -4.6 -3.1 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2576 -4.5 -13.5 Flagellar biosynthesis protein FlhA compare
Pf6N2E2_2755 -4.5 -2.0 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_5705 -4.4 -3.0 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_2591 -4.4 -6.0 Flagellar assembly protein FliH compare
Pf6N2E2_2564 -4.4 -6.2 Positive regulator of CheA protein activity (CheW) conserved
Pf6N2E2_3655 -4.3 -13.4 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_3753 -4.3 -16.6 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_2565 -4.3 -11.5 CheW domain protein conserved
Pf6N2E2_3677 -4.2 -13.0 Sensory box/GGDEF family protein compare
Pf6N2E2_5160 -4.2 -1.8 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_2506 -4.2 -11.6 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_2569 -4.2 -8.5 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) conserved
Pf6N2E2_5014 -4.1 -1.3 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_2599 -4.1 -7.7 Flagellar biosynthesis protein FliS conserved
Pf6N2E2_2753 -4.1 -2.8 HtrA protease/chaperone protein compare
Pf6N2E2_69 -4.0 -7.4 Probable type IV pilus assembly FimV-related transmembrane protein conserved
Pf6N2E2_5129 -4.0 -15.9 ClpB protein conserved
Pf6N2E2_2318 -4.0 -8.8 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2176 -4.0 -2.9 Amidases related to nicotinamidase compare
Pf6N2E2_3656 -4.0 -8.1 Probable transcription regulator Mig-14 compare
Pf6N2E2_3617 -3.9 -5.4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_2510 -3.9 -2.7 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_5337 -3.9 -5.3 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_2568 -3.8 -6.4 Flagellar motor rotation protein MotA conserved
Pf6N2E2_3792 -3.8 -5.9 Glucans biosynthesis protein G precursor compare
Pf6N2E2_2824 -3.8 -8.9 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_5893 -3.8 -8.3 FIG00956448: hypothetical protein conserved
Pf6N2E2_2507 -3.8 -5.2 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2600 -3.8 -11.8 Flagellar hook-associated protein FliD conserved
Pf6N2E2_4678 -3.8 -1.2 hypothetical protein compare
Pf6N2E2_6082 -3.7 -4.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3569 -3.7 -2.6 hypothetical protein compare
Pf6N2E2_3665 -3.7 -1.1 serine/threonine protein kinase compare
Pf6N2E2_5245 -3.7 -7.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_2509 -3.6 -1.4 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_4803 -3.6 -2.2 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_4584 -3.6 -2.5 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_2574 -3.6 -2.2 Flagellar synthesis regulator FleN compare
Pf6N2E2_3027 -3.6 -1.6 Baseplate assembly protein V compare
Pf6N2E2_4810 -3.6 -7.7 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_5527 -3.6 -2.4 Cold shock protein CspC compare
Pf6N2E2_5001 -3.5 -2.3 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2180 -3.5 -3.4 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_5242 -3.5 -2.4 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_2986 -3.5 -3.3 Transcriptional regulator, LuxR family compare
Pf6N2E2_5316 -3.5 -2.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_5693 -3.5 -8.3 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) conserved
Pf6N2E2_2310 -3.5 -10.5 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_5049 -3.4 -2.3 acetyltransferase, GNAT family compare
Pf6N2E2_2277 -3.4 -2.6 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_5340 -3.4 -4.0 Stringent starvation protein A compare
Pf6N2E2_4153 -3.4 -1.7 Sensory box histidine kinase compare
Pf6N2E2_2340 -3.3 -5.0 Transcriptional regulator, GntR family compare
Pf6N2E2_5963 -3.2 -5.8 lipoprotein, putative conserved
Pf6N2E2_3761 -3.2 -15.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_5339 -3.2 -6.9 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2825 -3.2 -3.1 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_2527 -3.2 -5.7 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_81 -3.2 -3.2 hypothetical protein compare
Pf6N2E2_2552 -3.2 -6.8 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_2567 -3.2 -4.6 Flagellar motor rotation protein MotB conserved
Pf6N2E2_4417 -3.2 -4.2 Protein of unknown function DUF484 compare
Pf6N2E2_2281 -3.1 -1.8 Beta N-acetyl-glucosaminidase (EC 3.2.1.52) compare
Pf6N2E2_4369 -3.1 -2.2 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3611 -3.1 -1.7 HflC protein compare
Pf6N2E2_5069 -3.1 -6.1 putative Cytochrome bd2, subunit II compare
Pf6N2E2_4204 -3.1 -1.8 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_4889 -3.1 -8.0 Putative transport protein compare
Pf6N2E2_4205 -3.1 -4.2 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2303 -3.1 -6.1 Aerotaxis receptor Aer conserved
Pf6N2E2_4077 -3.0 -2.4 cytosolic long-chain acyl-CoA thioester hydrolase family protein compare
Pf6N2E2_3257 -3.0 -3.0 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_3151 -3.0 -4.6 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_2589 -3.0 -3.2 Flagellar protein FliJ compare
Pf6N2E2_2513 -3.0 -5.0 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_4187 -3.0 -5.0 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_4585 -3.0 -11.5 Cell division protein FtsX compare
Pf6N2E2_4838 -3.0 -9.3 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.-) compare
Pf6N2E2_5186 -3.0 -8.8 FIG00954491: hypothetical protein conserved
Pf6N2E2_3537 -3.0 -4.6 Cobalt-precorrin-6x reductase (EC 1.3.1.54) compare
Pf6N2E2_3661 -2.9 -4.5 hypothetical protein compare
Pf6N2E2_5291 -2.9 -15.7 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_4352 -2.9 -3.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4120 -2.9 -10.7 Trk system potassium uptake protein TrkA compare
Pf6N2E2_2274 -2.9 -5.8 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_4579 -2.9 -2.3 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_2566 -2.9 -5.4 Chromosome (plasmid) partitioning protein ParA conserved
Pf6N2E2_2707 -2.8 -2.8 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_4611 -2.8 -4.7 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5178 -2.8 -1.9 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_4273 -2.8 -7.6 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_4372 -2.8 -5.0 FIG00460773: hypothetical protein compare
Pf6N2E2_5150 -2.8 -3.4 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5390 -2.7 -8.6 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf6N2E2_2311 -2.7 -7.8 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_4416 -2.7 -3.3 Tyrosine recombinase XerC compare
Pf6N2E2_3460 -2.7 -1.6 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_3607 -2.7 -7.9 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2189 -2.7 -5.7 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_5184 -2.7 -9.5 Chromosome segregation ATPases conserved
Pf6N2E2_2313 -2.7 -4.1 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_5068 -2.7 -10.0 putative Cytochrome bd2, subunit I compare
Pf6N2E2_5505 -2.6 -2.5 hypothetical protein compare
Pf6N2E2_2752 -2.6 -8.3 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_5331 -2.6 -7.0 ATPase, AFG1 family compare
Pf6N2E2_4638 -2.5 -3.5 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_1625 -2.5 -3.5 Ferric reductase (1.6.99.14) compare
Pf6N2E2_3847 -2.5 -3.7 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf6N2E2_3258 -2.5 -4.5 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2321 -2.5 -6.9 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
Pf6N2E2_3039 -2.5 -6.1 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_2261 -2.5 -6.4 VacJ-like lipoprotein precursor compare
Pf6N2E2_4047 -2.4 -5.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_6100 -2.4 -2.0 tRNA-Val-TAC compare
Pf6N2E2_2708 -2.4 -4.1 Lactam utilization protein LamB compare
Pf6N2E2_3844 -2.4 -1.8 hypothetical protein compare
Pf6N2E2_5111 -2.4 -2.0 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf6N2E2_2399 -2.4 -5.0 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase compare
Pf6N2E2_4206 -2.4 -1.4 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_3486 -2.4 -4.6 FIG00953575: hypothetical protein conserved
Pf6N2E2_3118 -2.4 -3.0 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_2514 -2.4 -4.4 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_2852 -2.3 -7.1 GGDEF domain/EAL domain protein compare
Pf6N2E2_4059 -2.3 -1.0 DNA-binding protein HU-alpha compare
Pf6N2E2_2519 -2.3 -1.2 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_3906 -2.3 -8.5 Transcription accessory protein (S1 RNA-binding domain) conserved
Pf6N2E2_5733 -2.3 -3.5 NLP/P60 family protein compare
Pf6N2E2_1774 -2.3 -1.3 DNA-binding response regulator, LuxR family, near polyamine transporter compare
Pf6N2E2_4809 -2.3 -10.9 COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases compare
Pf6N2E2_3303 -2.3 -4.3 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_3586 -2.3 -4.8 NAD synthetase (EC 6.3.1.5) compare
Pf6N2E2_2526 -2.3 -4.4 Similar to phosphoglycolate phosphatase, clustered with ubiquinone biosynthesis SAM-dependent O-methyltransferase compare
Pf6N2E2_2309 -2.3 -2.0 hypothetical protein compare
Pf6N2E2_4276 -2.3 -4.4 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_6064 -2.2 -5.1 2-methylaconitate isomerase compare
Pf6N2E2_2508 -2.2 -3.2 hypothetical protein compare
Pf6N2E2_4763 -2.2 -5.8 Biotin synthesis protein BioC compare
Pf6N2E2_586 -2.2 -6.9 Membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) compare
Pf6N2E2_3839 -2.2 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf6N2E2_248 -2.2 -7.4 hypothetical protein compare
Pf6N2E2_622 -2.2 -3.2 BatA (Bacteroides aerotolerance operon) compare
Pf6N2E2_338 -2.1 -1.5 Transcriptional regulator, AraC family compare
Pf6N2E2_2634 -2.1 -8.9 Potassium uptake protein TrkH compare
Pf6N2E2_2706 -2.1 -1.7 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) compare
Pf6N2E2_4759 -2.1 -8.1 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_4279 -2.1 -7.7 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf6N2E2_3040 -2.1 -5.5 5-nucleotidase SurE (EC 3.1.3.5) compare
Pf6N2E2_624 -2.1 -4.8 hypothetical protein PA3071 compare
Pf6N2E2_5679 -2.1 -4.5 hypothetical protein compare
Pf6N2E2_1694 -2.1 -1.2 FMN reductase (EC 1.5.1.29) compare


Specific Phenotypes

For 59 genes in this experiment

For motility Agar in Pseudomonas fluorescens FW300-N2E2

For motility Agar across organisms