Experiment set3IT087 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Vancomycin Hydrochloride Hydrate 1 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_12500 -3.7 -2.5 shikimate kinase compare
AO353_22685 -3.6 -4.3 peroxidase compare
AO353_09240 -3.4 -4.0 acetylglutamate kinase compare
AO353_13100 -3.4 -3.2 GTPase RsgA compare
AO353_02660 -3.3 -6.6 peptidase P60 compare
AO353_06415 -3.2 -6.7 hypothetical protein compare
AO353_09745 -3.0 -3.5 hypothetical protein compare
AO353_03580 -3.0 -4.0 ATP-dependent DNA helicase RuvB compare
AO353_15905 -2.9 -8.3 outer membrane protein assembly factor BamB compare
AO353_11770 -2.9 -2.8 molecular chaperone Hsp33 compare
AO353_07355 -2.9 -5.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_06585 -2.7 -9.0 hypothetical protein compare
AO353_17035 -2.6 -6.7 hypothetical protein compare
AO353_18540 -2.6 -3.4 pseudouridine synthase compare
AO353_10930 -2.6 -10.7 DNA polymerase I compare
AO353_09000 -2.5 -7.2 argininosuccinate lyase compare
AO353_09040 -2.5 -2.8 diaminopimelate epimerase compare
AO353_01990 -2.4 -8.9 UDP-N-acetylglucosamine 2-epimerase compare
AO353_08685 -2.4 -9.7 N-acetylglutamate synthase compare
AO353_03590 -2.4 -4.9 crossover junction endodeoxyribonuclease RuvC compare
AO353_07155 -2.4 -8.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_08350 -2.4 -9.8 hypothetical protein compare
AO353_08165 -2.3 -4.1 pyrroline-5-carboxylate reductase compare
AO353_16805 -2.3 -6.9 recombinase RecA compare
AO353_03670 -2.3 -6.2 ornithine acetyltransferase compare
AO353_01975 -2.2 -8.7 glycosyl transferase compare
AO353_14220 -2.2 -2.5 ribosomal large subunit pseudouridine synthase D compare
AO353_12915 -2.2 -9.0 carbamoyltransferase compare
AO353_14495 -2.2 -11.8 acetolactate synthase 3 catalytic subunit compare
AO353_04490 -2.2 -10.6 murein transglycosylase compare
AO353_12115 -2.1 -3.2 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_02070 -2.1 -8.1 prephenate dehydratase compare
AO353_10670 -2.1 -7.5 shikimate dehydrogenase compare
AO353_12935 -2.1 -5.6 glycosyltransferase compare
AO353_25550 -2.1 -5.8 4-amino-4-deoxy-L-arabinose transferase compare
AO353_06040 -2.1 -4.1 exodeoxyribonuclease V subunit alpha compare
AO353_09235 -2.1 -9.2 phosphoglucomutase compare
AO353_00430 -2.1 -4.8 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_12950 -2.1 -9.7 polymerase compare
AO353_02250 -2.0 -4.2 chorismate synthase compare
AO353_02010 -2.0 -7.1 glycosyl transferase family 1 compare
AO353_01985 -2.0 -10.5 hypothetical protein compare
AO353_06495 -2.0 -5.8 gamma-glutamyl phosphate reductase compare
AO353_02020 -1.9 -5.6 hypothetical protein compare
AO353_01410 -1.9 -3.9 ribonuclease E compare
AO353_02025 -1.9 -10.6 mannose-1-phosphate guanyltransferase compare
AO353_05625 -1.9 -1.3 transcription elongation factor GreA compare
AO353_04190 -1.9 -2.5 glycerol-3-phosphate dehydrogenase compare
AO353_00825 -1.8 -4.5 porin compare
AO353_06045 -1.8 -7.4 exodeoxyribonuclease V subunit beta compare
AO353_18630 -1.8 -8.5 beta-ketoacyl-ACP synthase compare
AO353_18170 -1.8 -7.4 aspartyl beta-hydroxylase compare
AO353_01995 -1.8 -12.3 hypothetical protein compare
AO353_12930 -1.8 -4.6 GlcNAc-PI de-N-acetylase compare
AO353_02015 -1.8 -7.7 acetyltransferase compare
AO353_15900 -1.8 -2.8 GTP-binding protein compare
AO353_26870 -1.8 -2.7 AP endonuclease compare
AO353_14740 -1.7 -4.4 GTP-binding protein compare
AO353_10455 -1.7 -2.7 tRNA modification GTPase MnmE compare
AO353_03585 -1.7 -3.3 ATP-dependent DNA helicase RuvA compare
AO353_04565 -1.7 -5.5 nucleoid-associated protein compare
AO353_00495 -1.7 -2.1 DNA topoisomerase I compare
AO353_22700 -1.7 -3.3 LexA family transcriptional regulator compare
AO353_10445 -1.7 -3.1 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_27650 -1.7 -4.9 cell division protein FtsK compare
AO353_04105 -1.7 -8.3 argininosuccinate synthase compare
AO353_20170 -1.7 -5.4 trigger factor compare
AO353_04355 -1.6 -2.5 homoserine dehydrogenase compare
AO353_14475 -1.6 -12.5 penicillin-binding protein 1B conserved
AO353_09890 -1.6 -5.3 phosphate ABC transporter ATP-binding protein compare
AO353_10055 -1.6 -10.4 DNA helicase II compare
AO353_05225 -1.6 -11.4 hypothetical protein compare
AO353_20565 -1.6 -1.6 tRNA-Ala compare
AO353_16940 -1.6 -6.1 deoxycytidine triphosphate deaminase compare
AO353_09315 -1.6 -8.3 LysR family transcriptional regulator compare
AO353_02060 -1.5 -4.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO353_01970 -1.5 -8.9 hypothetical protein compare
AO353_11730 -1.5 -8.6 glutamate--cysteine ligase compare
AO353_04360 -1.5 -5.1 protein-disulfide isomerase conserved
AO353_05420 -1.4 -2.2 peptide chain release factor 3 compare
AO353_00835 -1.4 -5.5 transporter compare
AO353_20685 -1.4 -6.5 colicin V production CvpA compare
AO353_25990 -1.4 -5.9 aspartyl beta-hydroxylase compare
AO353_09250 -1.4 -3.4 exodeoxyribonuclease III compare
AO353_03710 -1.4 -2.8 formyltetrahydrofolate deformylase compare
AO353_14500 -1.4 -5.8 acetolactate synthase 3 regulatory subunit compare
AO353_17940 -1.4 -3.6 hypothetical protein compare
AO353_06050 -1.4 -6.2 exodeoxyribonuclease V subunit gamma compare
AO353_09900 -1.4 -9.2 phosphate ABC transporter permease compare
AO353_23735 -1.3 -6.0 AAA family ATPase compare
AO353_08880 -1.3 -2.8 exopolyphosphatase compare
AO353_09320 -1.3 -7.1 ATP-dependent DNA helicase RecG compare
AO353_02000 -1.3 -3.7 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_08115 -1.3 -5.0 energy transducer TonB compare
AO353_07900 -1.3 -3.9 hypothetical protein compare
AO353_00515 -1.3 -3.4 hypothetical protein compare
AO353_09905 -1.3 -6.9 phosphate-binding protein compare
AO353_19205 -1.3 -3.7 hypothetical protein compare
AO353_23725 -1.3 -4.7 hypothetical protein compare
AO353_19770 -1.3 -2.5 peptidase compare
AO353_27090 -1.3 -2.5 hypothetical protein compare
AO353_13225 -1.3 -3.3 50S ribosomal protein L9 compare
AO353_08245 -1.3 -3.7 cell division ATP-binding protein FtsE compare
AO353_20185 -1.2 -4.9 DNA-binding protein compare
AO353_16810 -1.2 -3.4 recombinase RecX compare
AO353_13140 -1.2 -4.8 tRNA dimethylallyltransferase compare
AO353_15185 -1.2 -4.4 ATPase compare
AO353_14420 -1.2 -3.8 molecular chaperone DnaK compare
AO353_16495 -1.2 -4.5 zinc metallopeptidase RseP compare
AO353_14480 -1.2 -6.8 hypothetical protein compare
AO353_23710 -1.2 -4.3 protein BatD compare
AO353_00660 -1.2 -2.7 transcriptional regulator compare
AO353_03795 -1.2 -3.1 fumarate hydratase compare
AO353_10435 -1.1 -6.9 chromosome partitioning protein compare
AO353_14975 -1.1 -4.1 hypothetical protein compare
AO353_14115 -1.1 -4.5 gamma-glutamyl kinase compare
AO353_21945 -1.1 -2.5 protein nirL compare
AO353_05690 -1.1 -2.6 SsrA-binding protein compare
AO353_02280 -1.1 -2.2 DNA mismatch repair protein MutS compare
AO353_22810 -1.1 -1.4 hypothetical protein compare
AO353_13200 -1.1 -7.4 exoribonuclease R compare
AO353_23720 -1.1 -2.2 BatB protein compare
AO353_23730 -1.1 -1.6 hypothetical protein compare
AO353_07075 -1.1 -3.5 elongation factor Tu compare
AO353_07610 -1.1 -1.8 hypothetical protein compare
AO353_07325 -1.1 -1.7 diadenosine tetraphosphatase compare
AO353_21640 -1.1 -1.8 cobalt transporter compare
AO353_27855 -1.1 -1.3 MarR family transcriptional regulator compare
AO353_05550 -1.1 -4.0 pseudouridine synthase compare
AO353_21465 -1.1 -1.8 cation:proton antiporter compare
AO353_03545 -1.0 -5.1 hypothetical protein compare
AO353_00635 -1.0 -2.8 hypothetical protein compare
AO353_07140 -1.0 -8.4 peptidase M23 compare
AO353_02685 -1.0 -3.2 phosphoribosylglycinamide formyltransferase compare
AO353_24130 -1.0 -2.2 hypothetical protein compare
AO353_21410 -1.0 -2.3 hypothetical protein compare
AO353_27130 -1.0 -2.2 hypothetical protein compare
AO353_13925 -1.0 -1.8 XRE family transcriptional regulator compare
AO353_23715 -1.0 -4.6 hypothetical protein compare
AO353_19250 -1.0 -1.5 molybdenum cofactor guanylyltransferase compare
AO353_10945 -1.0 -2.2 cytochrome C compare
AO353_09400 -1.0 -2.6 hypothetical protein compare
AO353_04365 -1.0 -3.0 recombinase XerD compare
AO353_27720 -1.0 -2.9 cupin compare
AO353_20800 -1.0 -1.2 hypothetical protein compare
AO353_04055 -1.0 -1.6 methionine--tRNA ligase compare
AO353_17675 -1.0 -3.3 hypothetical protein compare
AO353_03615 -1.0 -2.7 cold-shock protein compare
AO353_20505 -1.0 -4.0 cytidyltransferase compare
AO353_04520 -1.0 -3.5 elongation factor 4 compare
AO353_17880 -0.9 -3.2 hypothetical protein compare
AO353_08980 -0.9 -2.7 heme biosynthesis operon protein HemX compare
AO353_13685 -0.9 -3.8 3-dehydroquinate dehydratase compare
AO353_27500 -0.9 -1.2 hypothetical protein compare
AO353_12345 -0.9 -1.8 twin-arginine protein translocation system subunit TatC compare
AO353_19060 -0.9 -3.5 CysB family transcriptional regulator compare
AO353_21420 -0.9 -3.0 hypothetical protein compare
AO353_29285 -0.9 -4.2 XRE family transcriptional regulator compare
AO353_26100 -0.9 -1.7 lysozyme compare
AO353_12940 -0.9 -4.3 glycosyl transferase compare
AO353_25530 -0.9 -3.4 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase compare
AO353_21625 -0.9 -1.5 Fe/S biogenesis protein NfuA compare
AO353_09050 -0.9 -2.7 recombinase XerC compare
AO353_09060 -0.9 -2.1 hypothetical protein compare
AO353_09895 -0.9 -4.1 phosphate ABC transporter permease compare
AO353_22920 -0.8 -3.2 GntR family transcriptional regulator compare
AO353_17680 -0.8 -3.1 MBL fold metallo-hydrolase compare
AO353_24440 -0.8 -1.4 reactive intermediate/imine deaminase compare
AO353_20390 -0.8 -3.1 rhodanese compare
AO353_23140 -0.8 -2.1 aspartate dehydrogenase compare
AO353_27155 -0.8 -1.3 hypothetical protein compare
AO353_19750 -0.8 -1.5 diaminopimelate epimerase compare
AO353_19145 -0.8 -2.8 protease HtpX compare
AO353_20865 -0.8 -1.1 cold-shock protein compare
AO353_08620 -0.8 -1.5 hypothetical protein compare
AO353_27460 -0.8 -2.3 hypothetical protein compare
AO353_02235 -0.8 -3.5 acireductone dioxygenase compare
AO353_04175 -0.8 -2.9 glycerol uptake facilitator GlpF compare
AO353_13640 -0.8 -3.2 histidine kinase compare
AO353_08600 -0.8 -2.2 TetR family transcriptional regulator compare
AO353_08110 -0.8 -3.9 glutathione synthetase compare
AO353_09885 -0.8 -2.1 transcriptional regulator PhoU compare
AO353_06795 -0.8 -1.8 Isochorismatase compare
AO353_17175 -0.8 -1.9 beta-ketoadipyl CoA thiolase compare
AO353_02300 -0.8 -1.4 MarR family transcriptional regulator compare
AO353_02190 -0.8 -5.3 hypothetical protein compare
AO353_26815 -0.8 -2.3 transcriptional regulator compare
AO353_06775 -0.8 -3.0 dTDP-4-dehydrorhamnose reductase compare
AO353_12765 -0.8 -2.1 transcriptional regulator compare
AO353_27695 -0.7 -4.1 isocitrate dehydrogenase compare
AO353_27440 -0.7 -2.4 hypothetical protein compare
AO353_27580 -0.7 -2.7 hypothetical protein compare
AO353_17410 -0.7 -1.8 arylsulfate sulfotransferase compare
AO353_11470 -0.7 -3.1 hypothetical protein compare
AO353_06455 -0.7 -1.8 D-alanyl-D-alanine carboxypeptidase compare
AO353_17645 -0.7 -5.0 peptidase M48 compare
AO353_24745 -0.7 -1.7 hypothetical protein compare
AO353_07905 -0.7 -2.9 hypothetical protein compare
AO353_27410 -0.7 -1.9 hypothetical protein compare
AO353_18765 -0.7 -2.5 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For stress Vancomycin Hydrochloride Hydrate in Pseudomonas fluorescens FW300-N2E3

For stress Vancomycin Hydrochloride Hydrate across organisms