Experiment set3IT087 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Sodium nitrate nitrogen source

200 most important genes:

  gene name fitness t score description  
PFLU_RS03645 -5.9 -11.3 tetratricopeptide repeat protein compare
PFLU_RS01645 -5.7 -10.3 S41 family peptidase compare
PFLU_RS28695 -4.6 -7.1 phosphoglycerate dehydrogenase compare
PFLU_RS28645 -4.6 -19.6 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS12975 -4.3 -4.2 DUF934 domain-containing protein compare
PFLU_RS26545 -4.2 -14.6 sel1 repeat family protein compare
PFLU_RS24125 -4.2 -2.9 cold-shock protein compare
PFLU_RS01895 -4.2 -7.0 phosphoribosyl-ATP diphosphatase compare
PFLU_RS14550 -4.1 -9.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS02490 -4.1 -12.8 phosphoserine phosphatase SerB compare
PFLU_RS01605 -4.0 -10.1 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS22740 -3.9 -2.7 phosphoadenylyl-sulfate reductase compare
PFLU_RS16710 -3.8 -5.1 nitrite reductase small subunit NirD compare
PFLU_RS00180 -3.7 -8.3 tryptophan synthase subunit beta compare
PFLU_RS04070 -3.7 -4.4 peptide chain release factor 3 compare
PFLU_RS20565 -3.6 -15.9 3-isopropylmalate dehydrogenase compare
PFLU_RS22105 -3.6 -5.5 cysteine synthase CysM compare
PFLU_RS25640 -3.6 -13.4 ketol-acid reductoisomerase compare
PFLU_RS04945 -3.6 -4.2 molybdopterin synthase catalytic subunit MoaE compare
PFLU_RS22095 -3.6 -21.7 GTP diphosphokinase compare
PFLU_RS01625 -3.6 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS18505 -3.5 -11.5 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS23065 -3.5 -10.8 phosphate acyltransferase PlsX compare
PFLU_RS02050 -3.5 -18.6 NAD(P)-binding protein compare
PFLU_RS01620 -3.5 -10.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS29880 -3.5 -15.9 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS25735 -3.5 -7.4 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS29875 -3.5 -17.8 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS23585 -3.4 -10.4 GntP family permease compare
PFLU_RS03995 -3.4 -2.1 hypothetical protein compare
PFLU_RS23590 -3.4 -2.4 gluconokinase compare
PFLU_RS02045 -3.4 -23.5 glutamate synthase large subunit compare
PFLU_RS28165 -3.4 -13.3 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS12980 -3.3 -11.1 nitrite/sulfite reductase compare
PFLU_RS23070 -3.3 -1.7 50S ribosomal protein L32 compare
PFLU_RS24330 -3.3 -6.6 phosphogluconate dehydratase compare
PFLU_RS01610 -3.3 -13.7 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS21240 -3.3 -2.7 hypothetical protein compare
PFLU_RS29885 -3.2 -13.2 LysR family transcriptional regulator compare
PFLU_RS02590 -3.2 -9.5 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS01900 -3.2 -9.3 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS04315 -3.2 -4.4 rod shape-determining protein MreD compare
PFLU_RS28655 -3.2 -15.4 HAD family hydrolase compare
PFLU_RS09055 -3.2 -2.2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS02365 -3.2 -15.4 glycosyltransferase compare
PFLU_RS20580 -3.2 -15.1 3-isopropylmalate dehydratase large subunit compare
PFLU_RS25760 -3.2 -14.8 glucose-6-phosphate isomerase compare
PFLU_RS28535 -3.2 -17.2 dihydroxy-acid dehydratase compare
PFLU_RS25360 -3.2 -8.8 glutamate 5-kinase compare
PFLU_RS22595 -3.2 -4.8 OmpA family protein compare
PFLU_RS23725 -3.1 -14.4 glucose-6-phosphate dehydrogenase compare
PFLU_RS25755 -3.1 -4.2 pantoate--beta-alanine ligase compare
PFLU_RS21300 -3.1 -7.2 cysteine hydrolase compare
PFLU_RS20540 -3.1 -12.8 phosphoribosylanthranilate isomerase compare
PFLU_RS23310 -3.1 -10.2 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS01685 -3.1 -6.1 nitrogen regulation protein NR(I) compare
PFLU_RS03770 -3.0 -14.0 sulfate adenylyltransferase subunit CysN compare
PFLU_RS27640 -3.0 -1.9 alpha/beta fold hydrolase compare
PFLU_RS04445 -3.0 -8.3 ABC transporter substrate-binding protein compare
PFLU_RS03765 -3.0 -12.1 sulfate adenylyltransferase subunit CysD compare
PFLU_RS03970 -3.0 -12.2 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS04470 -3.0 -13.5 histidinol dehydrogenase compare
PFLU_RS27440 -3.0 -9.0 nucleotidyltransferase family protein compare
PFLU_RS24485 -3.0 -12.2 hypothetical protein compare
PFLU_RS04435 -3.0 -7.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS08505 -2.9 -9.0 protease HtpX compare
PFLU_RS06265 -2.9 -18.7 [protein-PII] uridylyltransferase compare
PFLU_RS24765 -2.9 -18.6 2-isopropylmalate synthase compare
PFLU_RS07650 -2.9 -14.7 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS28965 -2.9 -11.5 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS27365 -2.8 -9.3 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS19175 -2.8 -10.1 trigger factor compare
PFLU_RS27370 -2.8 -13.5 anthranilate phosphoribosyltransferase compare
PFLU_RS28385 -2.7 -12.9 homoserine O-acetyltransferase compare
PFLU_RS21495 -2.7 -3.6 TlpA family protein disulfide reductase compare
PFLU_RS01690 -2.7 -8.9 nitrogen regulation protein NR(II) compare
PFLU_RS30160 -2.7 -3.7 ParB/RepB/Spo0J family partition protein compare
PFLU_RS25730 -2.7 -17.8 PAS domain S-box protein compare
PFLU_RS04465 -2.7 -8.4 ATP phosphoribosyltransferase compare
PFLU_RS20575 -2.7 -6.0 3-isopropylmalate dehydratase small subunit compare
PFLU_RS26640 -2.7 -12.4 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS20510 -2.6 -13.9 O-succinylhomoserine sulfhydrylase compare
PFLU_RS28390 -2.6 -9.0 methionine biosynthesis protein MetW compare
PFLU_RS25225 -2.6 -9.3 disulfide bond formation protein B compare
PFLU_RS00415 -2.6 -1.8 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS26770 -2.6 -12.4 DedA family protein compare
PFLU_RS25750 -2.6 -6.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS16715 -2.5 -12.2 nitrite reductase large subunit conserved
PFLU_RS27620 -2.5 -15.1 acyl-CoA dehydrogenase compare
PFLU_RS03555 -2.5 -1.3 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS20515 -2.5 -4.1 amidophosphoribosyltransferase compare
PFLU_RS04385 -2.5 -10.4 RNase adapter RapZ compare
PFLU_RS14820 -2.5 -6.6 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS24325 -2.5 -12.8 glucokinase compare
PFLU_RS20625 -2.5 -2.5 TetR/AcrR family transcriptional regulator compare
PFLU_RS29095 -2.4 -18.5 polyphosphate kinase 1 compare
PFLU_RS00175 -2.4 -9.7 tryptophan synthase subunit alpha compare
PFLU_RS04715 -2.4 -5.6 D-alanine--D-alanine ligase compare
PFLU_RS29515 -2.4 -10.4 RidA family protein compare
PFLU_RS04430 -2.4 -9.4 ATP-binding cassette domain-containing protein compare
PFLU_RS23305 -2.3 -10.4 arginine N-succinyltransferase compare
PFLU_RS09845 -2.3 -3.7 biotin carboxyl carrier domain-containing protein compare
PFLU_RS04440 -2.3 -10.5 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS26595 -2.3 -1.6 lipoprotein compare
PFLU_RS24790 -2.3 -6.1 tetratricopeptide repeat protein compare
PFLU_RS07785 -2.3 -12.1 VacJ family lipoprotein compare
PFLU_RS08620 -2.3 -5.4 molybdenum cofactor guanylyltransferase MobA compare
PFLU_RS21060 -2.3 -4.9 TetR/AcrR family transcriptional regulator compare
PFLU_RS04325 -2.2 -14.9 ribonuclease G compare
PFLU_RS01285 -2.2 -1.5 HAMP domain-containing protein compare
PFLU_RS24205 -2.2 -1.5 DNA binding protein compare
PFLU_RS13540 -2.1 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS08625 -2.1 -3.9 molybdenum cofactor biosynthesis protein B compare
PFLU_RS25715 -2.1 -9.8 RNA polymerase-binding protein DksA compare
PFLU_RS08630 -2.1 -6.3 molybdopterin molybdotransferase MoeA compare
PFLU_RS07225 -2.1 -12.6 L-aspartate oxidase compare
PFLU_RS08065 -2.1 -7.7 N-acetylmuramic acid 6-phosphate phosphatase MupP compare
PFLU_RS24785 -2.1 -10.4 outer membrane protein assembly factor BamB compare
PFLU_RS24695 -2.1 -1.5 PTS glucose transporter subunit IIB compare
PFLU_RS18655 -2.1 -2.6 NADH-quinone oxidoreductase subunit J compare
PFLU_RS24025 -2.1 -9.4 quinolinate synthase NadA compare
PFLU_RS14805 -2.1 -2.2 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF compare
PFLU_RS21360 -2.0 -2.8 MarR family transcriptional regulator compare
PFLU_RS26735 -2.0 -8.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS09980 -2.0 -13.2 peptidase S41 compare
PFLU_RS18530 -2.0 -5.3 DNA translocase FtsK compare
PFLU_RS22190 -2.0 -1.4 hypothetical protein compare
PFLU_RS16720 -2.0 -9.3 bifunctional nitrate reductase/sulfite reductase flavoprotein subunit alpha conserved
PFLU_RS22580 -2.0 -10.0 NarK/NasA family nitrate transporter conserved
PFLU_RS25645 -1.9 -1.3 acetolactate synthase small subunit compare
PFLU_RS24085 -1.9 -4.0 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS07695 -1.9 -4.3 beta-N-acetylhexosaminidase compare
PFLU_RS02775 -1.9 -1.9 urease accessory protein UreF compare
PFLU_RS23010 -1.8 -8.2 radical SAM protein compare
PFLU_RS07685 -1.8 -3.4 transcriptional repressor LexA compare
PFLU_RS22575 -1.8 -6.2 ANTAR domain-containing protein conserved
PFLU_RS28650 -1.8 -4.9 RNA pyrophosphohydrolase compare
PFLU_RS01965 -1.8 -2.0 ATP-dependent protease subunit HslV compare
PFLU_RS08410 -1.8 -6.7 HTH-type transcriptional regulator CysB compare
PFLU_RS06320 -1.8 -2.9 OmpH family outer membrane protein compare
PFLU_RS18395 -1.7 -1.9 MotA/TolQ/ExbB proton channel family protein compare
PFLU_RS24090 -1.7 -3.2 Holliday junction branch migration protein RuvA compare
PFLU_RS30165 -1.7 -7.3 ParA family protein compare
PFLU_RS28725 -1.7 -9.6 DUF2059 domain-containing protein compare
PFLU_RS08155 -1.7 -4.4 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS31490 -1.7 -1.5 hypothetical protein compare
PFLU_RS27635 -1.7 -7.7 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS19550 -1.7 -1.2 ABC transporter ATP-binding protein compare
PFLU_RS18635 -1.7 -3.2 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS31535 -1.7 -1.9 hypothetical protein compare
PFLU_RS24255 -1.7 -8.7 pyruvate kinase compare
PFLU_RS04220 -1.7 -7.4 FadR family transcriptional regulator compare
PFLU_RS08160 -1.6 -6.8 sugar transferase compare
PFLU_RS29280 -1.6 -5.7 tyrosine recombinase XerC compare
PFLU_RS28325 -1.6 -6.9 energy transducer TonB compare
PFLU_RS29275 -1.6 -5.7 DUF484 family protein compare
PFLU_RS04935 -1.6 -4.1 cyclic pyranopterin monophosphate synthase MoaC compare
PFLU_RS24095 -1.6 -2.7 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS25585 -1.6 -1.8 exodeoxyribonuclease V subunit alpha compare
PFLU_RS07810 -1.6 -10.1 tRNA dihydrouridine(20/20a) synthase DusA compare
PFLU_RS26660 -1.6 -2.3 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
PFLU_RS26905 -1.5 -6.5 transcriptional regulator NrdR compare
PFLU_RS25740 -1.5 -5.3 polynucleotide adenylyltransferase PcnB compare
PFLU_RS01650 -1.5 -6.4 murein hydrolase activator EnvC compare
PFLU_RS31590 -1.5 -1.4 hypothetical protein compare
PFLU_RS20690 -1.5 -3.8 hypothetical protein compare
PFLU_RS19170 -1.5 -3.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS18910 -1.5 -3.4 MarR family transcriptional regulator compare
PFLU_RS18675 -1.5 -2.7 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS18625 -1.5 -6.0 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS11525 -1.5 -4.5 GntR family transcriptional regulator compare
PFLU_RS28320 -1.5 -1.8 glutathione synthase compare
PFLU_RS23745 -1.5 -6.3 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC compare
PFLU_RS20520 -1.5 -6.5 colicin V production protein CvpA compare
PFLU_RS04015 -1.5 -2.4 1-phosphofructokinase compare
PFLU_RS14430 -1.5 -1.7 arsenate reductase ArsC compare
PFLU_RS27650 -1.5 -8.5 biotin synthase BioB compare
PFLU_RS24315 -1.5 -6.5 HAMP domain-containing protein compare
PFLU_RS18665 -1.5 -3.1 NADH-quinone oxidoreductase subunit L compare
PFLU_RS18670 -1.4 -1.8 NADH-quinone oxidoreductase subunit M compare
PFLU_RS02370 -1.4 -7.1 glycosyltransferase compare
PFLU_RS24145 -1.4 -3.1 mechanosensitive ion channel compare
PFLU_RS28690 -1.4 -8.2 FAD-binding oxidoreductase compare
PFLU_RS11930 -1.4 -2.9 biopolymer transporter ExbD compare
PFLU_RS26020 -1.4 -7.8 TetR/AcrR family transcriptional regulator compare
PFLU_RS24805 -1.4 -4.6 helix-turn-helix domain-containing protein compare
PFLU_RS22070 -1.4 -4.3 phosphoribosylglycinamide formyltransferase compare
PFLU_RS12800 -1.4 -1.9 amino acid ABC transporter ATP-binding protein compare
PFLU_RS09305 -1.4 -10.0 hypothetical protein compare
PFLU_RS01390 -1.4 -4.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
PFLU_RS26635 -1.4 -5.7 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS27445 -1.4 -8.3 phosphotransferase compare
PFLU_RS23680 -1.4 -9.4 long-chain fatty acid--CoA ligase compare
PFLU_RS13750 -1.4 -1.6 hypothetical protein compare
PFLU_RS08675 -1.4 -0.9 DsbE family thiol:disulfide interchange protein compare
PFLU_RS29195 -1.4 -5.6 heme biosynthesis protein HemY compare
PFLU_RS29560 -1.4 -0.9 hypothetical protein compare
PFLU_RS31785 -1.4 -3.6 hypothetical protein compare
PFLU_RS23670 -1.3 -2.7 CsbD family protein compare
PFLU_RS29900 -1.3 -7.3 DNA helicase II compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas fluorescens SBW25-INTG

For nitrogen source D-Glucose across organisms