Experiment set3IT087 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Cobalt chloride hexahydrate 0.04 mM

200 most important genes:

  gene name fitness t score description  
Ga0059261_4186 -4.1 -3.9 Phosphopantetheine attachment site compare
Ga0059261_0170 -3.7 -7.3 Uncharacterized protein involved in biosynthesis of c-type cytochromes compare
Ga0059261_1258 -3.7 -27.6 TonB-dependent siderophore receptor compare
Ga0059261_1545 -3.5 -8.4 Fe2+/Zn2+ uptake regulation proteins compare
Ga0059261_0172 -3.4 -12.1 Cytochrome c biogenesis factor compare
Ga0059261_0175 -3.3 -11.4 heme exporter protein CcmC compare
Ga0059261_2707 -3.2 -10.0 fructose-1,6-bisphosphatase, class II compare
Ga0059261_1257 -3.2 -9.7 Uncharacterized iron-regulated protein compare
Ga0059261_0349 -3.2 -6.9 MarR family compare
Ga0059261_0613 -3.0 -6.1 FecR family protein compare
Ga0059261_4188 -3.0 -9.6 pyridoxal-dependent decarboxylase, exosortase A system-associated compare
Ga0059261_3615 -2.9 -2.7 hypothetical protein compare
Ga0059261_4187 -2.8 -13.1 acyl-CoA ligase (AMP-forming), exosortase A-associated compare
Ga0059261_3637 -2.7 -4.0 Uncharacterized protein conserved in bacteria compare
Ga0059261_1507 -2.7 -4.6 deoxycytidine triphosphate deaminase compare
Ga0059261_2189 -2.6 -11.1 uncharacterized domain 1 compare
Ga0059261_0171 -2.6 -3.9 Thiol-disulfide isomerase and thioredoxins compare
Ga0059261_0163 -2.6 -5.1 Major Facilitator Superfamily compare
Ga0059261_2490 -2.6 -7.9 Small protein A (tmRNA-binding) compare
Ga0059261_0790 -2.5 -3.7 putative membrane protein insertion efficiency factor compare
Ga0059261_2444 -2.1 -6.5 5-aminolevulinic acid synthase compare
Ga0059261_1560 -2.1 -4.4 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain compare
Ga0059261_2417 -2.0 -4.9 phytoene desaturase compare
Ga0059261_0474 -1.9 -14.2 cation diffusion facilitator family transporter compare
Ga0059261_0290 -1.8 -6.9 3-dehydroquinate dehydratase (EC 4.2.1.10) compare
Ga0059261_3276 -1.8 -8.8 ABC-type multidrug transport system, ATPase and permease components compare
Ga0059261_0245 -1.6 -2.5 pseudouridine synthase compare
Ga0059261_2179 -1.6 -9.6 Phospholipid N-methyltransferase compare
Ga0059261_1872 -1.5 -6.5 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
Ga0059261_0875 -1.5 -2.8 Leucyl aminopeptidase compare
Ga0059261_2190 -1.5 -3.1 PTS IIA-like nitrogen-regulatory protein PtsN compare
Ga0059261_2285 -1.5 -2.6 Fe2+ transport system protein A compare
Ga0059261_1696 -1.4 -4.9 Pyridine nucleotide-disulphide oxidoreductase/Reductase C-terminal compare
Ga0059261_1564 -1.4 -5.3 cytochrome bo3 quinol oxidase subunit 3 (EC 1.10.3.-) compare
Ga0059261_1563 -1.4 -3.2 cytochrome bo3 quinol oxidase subunit 4 (EC 1.10.3.-) compare
Ga0059261_1868 -1.4 -3.1 ABC-type uncharacterized transport system, auxiliary component compare
Ga0059261_2194 -1.4 -4.5 shikimate dehydrogenase (EC 1.1.1.25) (from data) compare
Ga0059261_1369 -1.4 -8.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
Ga0059261_2458 -1.3 -7.9 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases compare
Ga0059261_0136 -1.3 -4.3 Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation compare
Ga0059261_3488 -1.3 -1.7 Histidine kinase/HAMP domain compare
Ga0059261_1565 -1.3 -9.6 cytochrome bo3 quinol oxidase subunit 1 apoprotein (EC 1.10.3.-) compare
Ga0059261_3097 -1.3 -6.1 Calcineurin-like phosphoesterase compare
Ga0059261_2013 -1.2 -9.4 signal peptidase I, bacterial type compare
Ga0059261_1382 -1.2 -6.7 periplasmic serine protease, Do/DeqQ family compare
Ga0059261_0121 -1.2 -1.9 Sporulation related domain compare
Ga0059261_1871 -1.2 -7.7 ABC transport permease subunit compare
Ga0059261_3502 -1.2 -3.1 Fatty acid desaturase compare
Ga0059261_0239 -1.1 -2.3 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
Ga0059261_1566 -1.1 -6.8 cytochrome o ubiquinol oxidase subunit II compare
Ga0059261_3945 -1.1 -7.6 type II secretion system protein D compare
Ga0059261_0321 -1.1 -2.2 hypothetical protein compare
Ga0059261_1869 -1.1 -5.5 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
Ga0059261_3119 -1.1 -3.9 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_3125 -1.1 -2.5 Imidazoleglycerol-phosphate synthase compare
Ga0059261_3896 -1.1 -3.9 integration host factor, beta subunit compare
Ga0059261_0174 -1.1 -2.0 hypothetical protein compare
Ga0059261_3114 -1.1 -6.7 hypothetical protein compare
Ga0059261_1605 -1.1 -6.4 transcriptional regulator, TetR family compare
Ga0059261_0037 -1.1 -7.4 hypothetical protein compare
Ga0059261_2501 -1.1 -5.8 C-terminal peptidase (prc) compare
Ga0059261_1870 -1.1 -5.2 ABC-type transport system involved in resistance to organic solvents, ATPase component compare
Ga0059261_1370 -1.1 -6.4 Signal transduction histidine kinase compare
Ga0059261_2514 -1.0 -8.3 phosphoenolpyruvate-protein phosphotransferase compare
Ga0059261_2005 -1.0 -4.4 protoheme IX farnesyltransferase compare
Ga0059261_3130 -1.0 -5.9 Lipid A core - O-antigen ligase and related enzymes compare
Ga0059261_1612 -1.0 -1.6 hypothetical protein compare
Ga0059261_3127 -1.0 -5.6 hypothetical protein compare
Ga0059261_3156 -1.0 -4.9 peptidoglycan-associated lipoprotein compare
Ga0059261_3341 -0.9 -5.3 ATP-dependent protease HslVU, peptidase subunit compare
Ga0059261_3101 -0.9 -3.4 nucleotide sugar dehydrogenase compare
Ga0059261_0918 -0.9 -4.6 Phosphotransferase system, mannose/fructose-specific component IIA compare
Ga0059261_0889 -0.9 -2.8 Cold shock proteins compare
Ga0059261_2286 -0.9 -4.9 Fe2+ transport system protein B compare
Ga0059261_3956 -0.9 -4.6 amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-) compare
Ga0059261_3129 -0.9 -6.2 SLBB domain/Polysaccharide biosynthesis/export protein compare
Ga0059261_2295 -0.9 -1.9 DUF218 domain compare
Ga0059261_3208 -0.9 -2.2 hypothetical protein compare
Ga0059261_3211 -0.9 -5.9 hypothetical protein compare
Ga0059261_1611 -0.9 -7.1 Glucose/sorbosone dehydrogenases compare
Ga0059261_3128 -0.8 -6.6 capsular exopolysaccharide family compare
Ga0059261_1293 -0.8 -6.5 (p)ppGpp synthetase, RelA/SpoT family compare
Ga0059261_1601 -0.8 -2.0 protein-(glutamine-N5) methyltransferase, release factor-specific compare
Ga0059261_1360 -0.8 -6.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
Ga0059261_2145 -0.8 -4.2 ribosome-binding factor A compare
Ga0059261_3159 -0.8 -3.0 TolR protein compare
Ga0059261_2324 -0.8 -4.0 integration host factor, alpha subunit compare
Ga0059261_1453 -0.8 -5.0 Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs compare
Ga0059261_3506 -0.8 -1.7 Predicted permeases compare
Ga0059261_0246 -0.8 -1.2 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
Ga0059261_1287 -0.8 -5.4 poly(R)-hydroxyalkanoic acid synthase, class I compare
Ga0059261_1035 -0.8 -1.6 hypothetical protein compare
Ga0059261_3748 -0.8 -2.7 ribosomal protein L15, bacterial/organelle compare
Ga0059261_1909 -0.8 -4.6 MAF protein compare
Ga0059261_1562 -0.8 -3.2 Uncharacterized conserved protein compare
Ga0059261_1928 -0.8 -3.3 Predicted permeases compare
Ga0059261_0852 -0.8 -4.6 Transcriptional regulators compare
Ga0059261_3339 -0.7 -4.1 ATP-dependent protease HslVU, ATPase subunit compare
Ga0059261_3671 -0.7 -1.5 Citrate lyase beta subunit compare
Ga0059261_1451 -0.7 -3.0 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) compare
Ga0059261_1190 -0.7 -3.3 hypothetical protein compare
Ga0059261_3121 -0.7 -4.0 asparagine synthase (glutamine-hydrolyzing) compare
Ga0059261_0657 -0.7 -1.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_1929 -0.7 -3.4 Putative transmembrane protein (Alph_Pro_TM) compare
Ga0059261_3124 -0.7 -3.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
Ga0059261_0087 -0.7 -2.4 hypothetical protein compare
Ga0059261_2314 -0.7 -2.1 Protein-disulfide isomerase compare
Ga0059261_2191 -0.7 -3.4 ribosomal subunit interface protein compare
Ga0059261_3103 -0.7 -2.6 Glycosyltransferase compare
Ga0059261_3191 -0.7 -3.7 Glycosyltransferases involved in cell wall biogenesis compare
Ga0059261_4054 -0.7 -2.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_0255 -0.6 -1.9 SurA N-terminal domain/PPIC-type PPIASE domain compare
Ga0059261_0664 -0.6 -1.6 pseudouridine synthase, RluA family compare
Ga0059261_3437 -0.6 -1.2 hypothetical protein compare
Ga0059261_1846 -0.6 -4.5 Xaa-Pro aminopeptidase compare
Ga0059261_0493 -0.6 -1.3 hypothetical protein compare
Ga0059261_0817 -0.6 -3.4 GTP-binding protein TypA/BipA compare
Ga0059261_3609 -0.6 -3.1 Protein of unknown function (DUF2945) compare
Ga0059261_2391 -0.6 -1.5 Helix-turn-helix domain compare
Ga0059261_3160 -0.6 -2.1 TolQ protein compare
Ga0059261_0627 -0.6 -1.1 cobalamin-5'-phosphate synthase (EC 2.7.8.26) compare
Ga0059261_0120 -0.6 -4.6 lytic murein transglycosylase compare
Ga0059261_2418 -0.6 -3.0 lycopene cyclase compare
Ga0059261_2034 -0.6 -4.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_3955 -0.6 -3.3 hypothetical protein compare
Ga0059261_3866 -0.6 -4.7 cytochrome bd-I ubiquinol oxidase subunit 2 apoprotein (EC 1.10.3.10) compare
Ga0059261_3938 -0.6 -3.8 Imidazolonepropionase and related amidohydrolases compare
Ga0059261_0725 -0.6 -1.9 Fructose-1,6-bisphosphate aldolase compare
Ga0059261_3157 -0.6 -5.0 tol-pal system beta propeller repeat protein TolB compare
Ga0059261_2086 -0.6 -1.3 SAF-like compare
Ga0059261_3865 -0.6 -4.0 cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10) compare
Ga0059261_2277 -0.6 -1.6 hypothetical protein compare
Ga0059261_3946 -0.6 -2.7 Type IV pilus biogenesis/PDZ domain compare
Ga0059261_3871 -0.6 -1.7 formate dehydrogenase family accessory protein FdhD compare
Ga0059261_1830 -0.6 -1.5 hypothetical protein compare
Ga0059261_0920 -0.6 -2.5 rRNA methylases compare
Ga0059261_0204 -0.6 -2.5 protein RecA compare
Ga0059261_3604 -0.5 -2.2 Uncharacterized protein conserved in bacteria compare
Ga0059261_3207 -0.5 -3.0 Disulfide bond chaperones of the HSP33 family compare
Ga0059261_2021 -0.5 -4.5 Protein of unknown function (DUF2029) compare
Ga0059261_2008 -0.5 -4.8 cytochrome c oxidase, subunit I compare
Ga0059261_3939 -0.5 -3.0 transcriptional regulator, TetR family compare
Ga0059261_1600 -0.5 -2.1 Domain of unknown function (DUF4167) compare
Ga0059261_2268 -0.5 -3.9 Cytochrome c2 compare
Ga0059261_3659 -0.5 -3.2 PqqD family protein, HPr-rel-A system compare
Ga0059261_3340 -0.5 -3.4 Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) compare
Ga0059261_2204 -0.5 -3.9 tRNA modification GTPase trmE compare
Ga0059261_1431 -0.5 -1.7 hypothetical protein compare
Ga0059261_0796 -0.5 -1.4 Uncharacterized conserved protein, contains double-stranded beta-helix domain compare
Ga0059261_2700 -0.5 -4.2 Putative Zn-dependent protease, contains TPR repeats compare
Ga0059261_1032 -0.5 -2.4 protein CrcB compare
Ga0059261_0258 -0.5 -2.7 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54) compare
Ga0059261_2498 -0.5 -2.0 hypothetical protein compare
Ga0059261_1021 -0.5 -1.0 hypothetical protein compare
Ga0059261_2181 -0.5 -4.0 penicillin-binding protein, 1A family compare
Ga0059261_1544 -0.5 -3.3 transcriptional regulator, TetR family compare
Ga0059261_0853 -0.5 -1.2 peroxiredoxin, Ohr subfamily compare
Ga0059261_3947 -0.5 -1.6 type II secretion system protein I (GspI) compare
Ga0059261_1080 -0.5 -2.0 Chemotaxis signal transduction protein compare
Ga0059261_1017 -0.5 -2.5 tRNA-guanine transglycosylase compare
Ga0059261_4204 -0.5 -2.1 transcriptional regulator, TetR family compare
Ga0059261_1756 -0.5 -1.6 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes compare
Ga0059261_1795 -0.5 -2.8 Predicted nucleoside-diphosphate-sugar epimerases compare
Ga0059261_3335 -0.5 -1.7 hypothetical protein compare
Ga0059261_1610 -0.5 -2.5 CBS domain/Transporter associated domain compare
Ga0059261_1312 -0.5 -2.5 amino acid/peptide transporter (Peptide:H+ symporter), bacterial compare
Ga0059261_3807 -0.5 -2.7 Uncharacterized conserved protein compare
Ga0059261_2002 -0.5 -2.6 Heme/copper-type cytochrome/quinol oxidase, subunit 3 compare
Ga0059261_3284 -0.5 -3.6 acetyl-CoA acetyltransferases compare
Ga0059261_2913 -0.5 -1.3 Type IV secretory pathway, VirB2 components (pilins) compare
Ga0059261_0159 -0.5 -3.2 Transcriptional regulator compare
Ga0059261_0770 -0.5 -1.3 hypothetical protein compare
Ga0059261_1739 -0.5 -1.9 Conjugal transfer protein TraD compare
Ga0059261_0153 -0.5 -1.4 Serine acetyltransferase compare
Ga0059261_2244 -0.5 -3.7 DNA polymerase I (EC 2.7.7.7) compare
Ga0059261_2897 -0.5 -1.9 hypothetical protein compare
Ga0059261_0169 -0.5 -2.7 hypothetical protein compare
Ga0059261_2048 -0.5 -2.9 Thiol-disulfide isomerase and thioredoxins compare
Ga0059261_3190 -0.5 -4.1 3-isopropylmalate dehydrogenase compare
Ga0059261_1561 -0.5 -2.6 Signal transduction histidine kinase compare
Ga0059261_0369 -0.4 -1.2 ribosomal protein L9 compare
Ga0059261_3432 -0.4 -1.9 leucyl/phenylalanyl-tRNA--protein transferase compare
Ga0059261_0623 -0.4 -2.2 ABC-type Fe3+-siderophore transport system, permease component compare
Ga0059261_0357 -0.4 -1.7 hypothetical protein compare
Ga0059261_3038 -0.4 -1.9 hypothetical protein compare
Ga0059261_1729 -0.4 -2.1 Surface presentation of antigens (SPOA) compare
Ga0059261_3965 -0.4 -2.5 formimidoylglutamate deiminase (EC 3.5.3.13) compare
Ga0059261_2213 -0.4 -2.0 Domain of unknown function (DUF3576) compare
Ga0059261_3520 -0.4 -3.0 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
Ga0059261_3633 -0.4 -3.7 Acyl-CoA dehydrogenases compare
Ga0059261_2540 -0.4 -1.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_1791 -0.4 -0.5 hypothetical protein compare
Ga0059261_2146 -0.4 -2.5 Glyoxalase-like domain compare
Ga0059261_3650 -0.4 -1.4 hypothetical protein compare
Ga0059261_2846 -0.4 -2.5 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ga0059261_3374 -0.4 -1.9 NAD-dependent aldehyde dehydrogenases compare
Ga0059261_4055 -0.4 -3.0 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) compare
Ga0059261_1811 -0.4 -1.0 ATP:cob(I)alamin adenosyltransferase compare
Ga0059261_3562 -0.4 -1.4 Glycosyltransferase compare
Ga0059261_1206 -0.4 -3.4 Arabinose efflux permease compare


Specific Phenotypes

None in this experiment

For Sphingomonas koreensis DSMZ 15582 in stress experiments

For stress Cobalt chloride hexahydrate across organisms