Experiment set3IT087 for Sphingomonas koreensis DSMZ 15582

Compare to:

LB with Cobalt chloride hexahydrate 0.04 mM

200 most detrimental genes:

  gene name fitness t score description  
Ga0059261_3579 +1.4 6.1 hypothetical protein compare
Ga0059261_0208 +1.0 5.1 Response regulator receiver domain compare
Ga0059261_4120 +1.0 2.2 Stress responsive A/B Barrel Domain compare
Ga0059261_3581 +1.0 6.3 Alpha/beta hydrolase family compare
Ga0059261_3492 +0.8 4.0 RNA polymerase sigma factor, sigma-70 family compare
Ga0059261_3490 +0.8 4.7 Response regulator receiver domain/Sigma-70, region 4 compare
Ga0059261_0685 +0.8 2.3 pyruvate kinase compare
Ga0059261_0390 +0.7 1.9 Ribbon-helix-helix protein, copG family compare
Ga0059261_3491 +0.7 4.9 hypothetical protein compare
Ga0059261_0266 +0.7 2.3 hypothetical protein compare
Ga0059261_0045 +0.6 2.3 hypothetical protein compare
Ga0059261_1260 +0.6 5.2 cobaltochelatase CobT subunit (EC 6.6.1.2) compare
Ga0059261_1259 +0.6 3.0 Ribbon-helix-helix domain compare
Ga0059261_0059 +0.6 1.4 Stress-induced morphogen (activity unknown) compare
Ga0059261_4185 +0.6 1.5 hypothetical protein compare
Ga0059261_2471 +0.5 1.2 hypothetical protein compare
Ga0059261_3885 +0.5 1.2 K+-transporting ATPase, C subunit compare
Ga0059261_1408 +0.5 1.5 Domain of unknown function (DUF4168) compare
Ga0059261_3507 +0.5 4.4 His Kinase A (phospho-acceptor) domain/Response regulator receiver domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/CHASE3 domain compare
Ga0059261_0451 +0.5 2.3 hypothetical protein compare
Ga0059261_3755 +0.5 1.3 Protein of unknown function (DUF2798) compare
Ga0059261_0215 +0.5 2.8 Acetyltransferase (GNAT) family compare
Ga0059261_2188 +0.5 1.7 Uncharacterized conserved protein compare
Ga0059261_1527 +0.5 1.2 hypothetical protein compare
Ga0059261_1262 +0.5 3.9 cobaltochelatase CobS subunit (EC 6.6.1.2) compare
Ga0059261_1349 +0.4 1.1 hypothetical protein compare
Ga0059261_0354 +0.4 1.4 6-phosphogluconate dehydratase (EC 4.2.1.12) compare
Ga0059261_0921 +0.4 1.2 hypothetical protein compare
Ga0059261_2368 +0.4 1.9 Phage baseplate assembly protein W compare
Ga0059261_2019 +0.4 2.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_1292 +0.4 1.2 hypothetical protein compare
Ga0059261_2730 +0.4 1.4 Sortase and related acyltransferases compare
Ga0059261_0556 +0.4 1.8 Signal transduction histidine kinase compare
Ga0059261_1183 +0.4 1.4 Protein of unknown function (DUF2958) compare
Ga0059261_2018 +0.4 3.4 hypothetical protein compare
Ga0059261_0038 +0.4 1.9 Transcriptional regulators compare
Ga0059261_1772 +0.4 1.7 MobA/MobL family compare
Ga0059261_1652 +0.4 0.9 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily compare
Ga0059261_4122 +0.4 1.0 Gluconate 2-dehydrogenase subunit 3 compare
Ga0059261_1837 +0.4 1.3 Staphylococcal nuclease homologue compare
Ga0059261_3859 +0.4 1.4 MgtC family compare
Ga0059261_3634 +0.4 2.1 Predicted membrane protein compare
Ga0059261_0887 +0.4 1.8 Predicted transcriptional regulators compare
Ga0059261_1119 +0.4 0.9 Chemotaxis signal transduction protein compare
Ga0059261_2987 +0.4 1.2 hypothetical protein compare
Ga0059261_2547 +0.3 0.7 tRNA compare
Ga0059261_1169 +0.3 1.8 hypothetical protein compare
Ga0059261_3359 +0.3 1.3 Zn-dependent hydrolases, including glyoxylases compare
Ga0059261_0864 +0.3 1.5 hypothetical protein compare
Ga0059261_3518 +0.3 2.8 RND family efflux transporter, MFP subunit compare
Ga0059261_2229 +0.3 1.4 Predicted transcriptional regulators compare
Ga0059261_1253 +0.3 1.1 Uncharacterized protein conserved in bacteria compare
Ga0059261_3261 +0.3 2.4 Protein of unknown function (DUF938) compare
Ga0059261_0673 +0.3 1.7 hypothetical protein compare
Ga0059261_1049 +0.3 1.8 PEP-CTERM protein-sorting domain compare
Ga0059261_0671 +0.3 1.8 Uncharacterized conserved protein compare
Ga0059261_2768 +0.3 0.9 hypothetical protein compare
Ga0059261_3783 +0.3 1.9 hypothetical protein compare
Ga0059261_1056 +0.3 2.1 Etoposide-induced protein 2 compare
Ga0059261_0060 +0.3 1.3 Uncharacterized conserved protein compare
Ga0059261_3308 +0.3 1.5 Uncharacterized conserved protein compare
Ga0059261_2774 +0.3 1.1 Transcription elongation factor compare
Ga0059261_2886 +0.3 1.6 electron transfer flavoprotein beta subunit compare
Ga0059261_3602 +0.3 1.4 Glutaredoxin, GrxC family compare
Ga0059261_0449 +0.3 1.8 Uncharacterized protein, homolog of Cu resistance protein CopC compare
Ga0059261_1396 +0.3 1.5 EF-hand domain pair compare
Ga0059261_2429 +0.3 2.0 2'-5' RNA ligase superfamily compare
Ga0059261_2951 +0.3 1.2 Heavy-metal resistance compare
Ga0059261_3838 +0.3 1.6 Hemerythrin HHE cation binding domain compare
Ga0059261_0600 +0.3 1.8 CDP-glucose 4,6-dehydratase compare
Ga0059261_0223 +0.3 0.9 Peptidase inhibitor I78 family compare
Ga0059261_0244 +0.3 1.2 FOG: CheY-like receiver compare
Ga0059261_1999 +0.3 1.9 threonine synthase compare
Ga0059261_3317 +0.3 2.3 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs compare
Ga0059261_2907 +0.3 1.4 Acyl-CoA dehydrogenases compare
Ga0059261_0379 +0.3 1.3 DNA binding domain, excisionase family compare
Ga0059261_1438 +0.3 1.8 Membrane proteins related to metalloendopeptidases compare
Ga0059261_1577 +0.3 2.5 L-glutamine and L-histidine transporter (from data) compare
Ga0059261_1769 +0.3 1.7 hypothetical protein compare
Ga0059261_3144 +0.3 1.1 Transcriptional regulator compare
Ga0059261_1597 +0.3 1.5 hypothetical protein compare
Ga0059261_4053 +0.3 1.2 hypothetical protein compare
Ga0059261_2074 +0.3 2.0 Sigma-54 interaction domain/Bacterial regulatory protein, Fis family compare
Ga0059261_3196 +0.3 0.5 Transcriptional regulator compare
Ga0059261_2912 +0.3 1.3 P-type conjugative transfer ATPase TrbB compare
Ga0059261_4189 +0.3 1.6 hypothetical protein compare
Ga0059261_2079 +0.3 2.2 NIPSNAP compare
Ga0059261_2708 +0.3 1.3 hypothetical protein compare
Ga0059261_4217 +0.3 0.9 hypothetical protein compare
Ga0059261_1109 +0.3 1.5 Flagellar biosynthesis protein, FliO compare
Ga0059261_1212 +0.2 2.1 Outer membrane protein compare
Ga0059261_2618 +0.2 1.2 Protein of unknown function (DUF2721) compare
Ga0059261_0675 +0.2 0.9 hypothetical protein compare
Ga0059261_0579 +0.2 2.1 Neutral trehalase compare
Ga0059261_3169 +0.2 1.8 phosphoglycerate mutase, BPG-dependent, family 1 compare
Ga0059261_1209 +0.2 1.8 HupE / UreJ protein compare
Ga0059261_1939 +0.2 0.6 putative phosphoesterase compare
Ga0059261_0450 +0.2 1.3 Putative copper export protein compare
Ga0059261_1732 +0.2 1.1 Flagellar hook capping protein - N-terminal region compare
Ga0059261_0440 +0.2 1.7 Uncharacterized conserved protein compare
Ga0059261_0585 +0.2 1.4 Predicted membrane protein (DUF2306) compare
Ga0059261_3605 +0.2 0.8 tRNA compare
Ga0059261_1261 +0.2 1.0 hypothetical protein compare
Ga0059261_3906 +0.2 1.5 Transcriptional regulator compare
Ga0059261_4051 +0.2 1.2 Transcriptional regulator compare
Ga0059261_2345 +0.2 1.7 hypothetical protein compare
Ga0059261_1840 +0.2 1.5 hypothetical protein compare
Ga0059261_0983 +0.2 2.2 TonB dependent receptor/TonB-dependent Receptor Plug Domain compare
Ga0059261_3139 +0.2 1.4 Predicted membrane protein compare
Ga0059261_2810 +0.2 1.8 Predicted metal-dependent hydrolase of the TIM-barrel fold compare
Ga0059261_2259 +0.2 1.4 hypothetical protein compare
Ga0059261_1707 +0.2 1.3 hypothetical protein compare
Ga0059261_3706 +0.2 1.3 RF-1 domain compare
Ga0059261_2260 +0.2 1.8 TIGR01244 family protein compare
Ga0059261_3161 +0.2 1.3 tol-pal system-associated acyl-CoA thioesterase compare
Ga0059261_0264 +0.2 1.7 HAD superfamily, subfamily IIIB (Acid phosphatase) compare
Ga0059261_3280 +0.2 0.6 Uncharacterized conserved protein compare
Ga0059261_2570 +0.2 1.0 Type IV secretory pathway, TrbD component compare
Ga0059261_1050 +0.2 0.7 hypothetical protein compare
Ga0059261_3020 +0.2 1.5 Copper binding periplasmic protein CusF compare
Ga0059261_2658 +0.2 0.9 Transcriptional regulators compare
Ga0059261_1381 +0.2 1.3 Membrane protease subunits, stomatin/prohibitin homologs compare
Ga0059261_1881 +0.2 1.2 Predicted membrane protein compare
Ga0059261_1950 +0.2 1.4 hypothetical protein compare
Ga0059261_1523 +0.2 1.6 Transcriptional regulator compare
Ga0059261_1075 +0.2 0.5 Uncharacterized protein conserved in bacteria compare
Ga0059261_2763 +0.2 1.0 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Ga0059261_0220 +0.2 1.7 L-serine dehydratase, iron-sulfur-dependent, single chain form compare
Ga0059261_0832 +0.2 1.9 Predicted permease compare
Ga0059261_2461 +0.2 1.4 hypothetical protein compare
Ga0059261_1784 +0.2 1.7 Transcriptional regulator compare
Ga0059261_2220 +0.2 1.2 exodeoxyribonuclease III (xth) compare
Ga0059261_2068 +0.2 1.3 hypothetical protein compare
Ga0059261_0304 +0.2 0.6 Bacterioferritin-associated ferredoxin compare
Ga0059261_0690 +0.2 0.7 Acetyltransferases compare
Ga0059261_1578 +0.2 1.4 Rhodanese-like domain compare
Ga0059261_3920 +0.2 1.2 phosphonoacetaldehyde hydrolase (EC 3.11.1.1) compare
Ga0059261_3975 +0.2 1.2 Predicted ATPase/kinase involved in NAD metabolism compare
Ga0059261_4223 +0.2 1.7 3-isopropylmalate dehydratase, large subunit compare
Ga0059261_0218 +0.2 1.5 Protein of unknown function (DUF2971) compare
Ga0059261_4015 +0.2 1.3 Putative transcriptional regulator compare
Ga0059261_3027 +0.2 1.1 Predicted transcriptional regulators compare
Ga0059261_3891 +0.2 1.3 SapC compare
Ga0059261_0389 +0.2 1.2 P-type conjugative transfer ATPase TrbB compare
Ga0059261_1406 +0.2 1.0 Acetyltransferase (GNAT) family compare
Ga0059261_0896 +0.2 1.1 Citrate lyase beta subunit compare
Ga0059261_3444 +0.2 1.7 Uncharacterized protein conserved in bacteria compare
Ga0059261_2262 +0.2 1.5 Predicted acetyltransferase compare
Ga0059261_4082 +0.2 1.7 Membrane protein involved in the export of O-antigen and teichoic acid compare
Ga0059261_3236 +0.2 1.8 pyruvate phosphate dikinase (EC 2.7.9.1) compare
Ga0059261_3784 +0.2 1.7 DNA mismatch repair protein MutS compare
Ga0059261_1446 +0.2 1.3 hypothetical protein compare
Ga0059261_0925 +0.2 1.5 Phosphoglycerate dehydrogenase and related dehydrogenases compare
Ga0059261_3072 +0.2 1.4 P-type conjugative transfer ATPase TrbB compare
Ga0059261_1991 +0.2 1.1 hypothetical protein compare
Ga0059261_1278 +0.2 1.0 hypothetical protein compare
Ga0059261_1238 +0.2 1.7 His Kinase A (phospho-acceptor) domain/Response regulator receiver domain/Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase compare
Ga0059261_3914 +0.2 1.3 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
Ga0059261_3327 +0.2 1.1 hypothetical protein compare
Ga0059261_0035 +0.2 0.4 Uncharacterized protein conserved in bacteria compare
Ga0059261_3395 +0.2 0.9 hypothetical protein compare
Ga0059261_2098 +0.2 1.0 flagellar hook-associated protein FlgK compare
Ga0059261_0604 +0.2 1.5 Nucleoside-diphosphate-sugar epimerases compare
Ga0059261_3153 +0.2 0.8 Uncharacterized protein conserved in bacteria compare
Ga0059261_0351 +0.2 1.5 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
Ga0059261_3441 +0.2 0.7 hypothetical protein compare
Ga0059261_3834 +0.2 1.3 Molecular chaperone (small heat shock protein) compare
Ga0059261_2709 +0.2 1.2 hypothetical protein compare
Ga0059261_2020 +0.2 1.5 Glycosyltransferase compare
Ga0059261_3332 +0.2 1.2 Predicted membrane protein compare
Ga0059261_0346 +0.2 1.5 DNA-binding winged-HTH domains compare
Ga0059261_4214 +0.2 0.9 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_0344 +0.2 0.8 Molecular chaperone (small heat shock protein) compare
Ga0059261_2683 +0.2 1.2 Protein of unknown function (DUF3572) compare
Ga0059261_3833 +0.2 0.7 hypothetical protein compare
Ga0059261_2156 +0.2 1.5 hypothetical protein compare
Ga0059261_3649 +0.2 1.3 hypothetical protein compare
Ga0059261_1844 +0.2 1.3 O-6-methylguanine DNA methyltransferase compare
Ga0059261_2032 +0.2 1.6 Heat shock protein compare
Ga0059261_0737 +0.2 1.3 PRC-barrel domain compare
Ga0059261_3427 +0.2 1.2 Uncharacterized conserved protein compare
Ga0059261_0848 +0.2 1.5 transcriptional regulator, TetR family compare
Ga0059261_0439 +0.2 0.8 hypothetical protein compare
Ga0059261_4118 +0.2 1.4 Glycerophosphoryl diester phosphodiesterase compare
Ga0059261_2847 +0.2 1.2 Enoyl-CoA hydratase/carnithine racemase compare
Ga0059261_1488 +0.2 1.3 Uncharacterized protein conserved in bacteria compare
Ga0059261_2552 +0.2 1.0 Phosphotransacetylase compare
Ga0059261_1894 +0.2 1.0 D-xylose 1-dehydrogenase (EC 1.1.1.175) (from data) compare
Ga0059261_0224 +0.2 0.9 Exopolyphosphatase compare
Ga0059261_0501 +0.2 1.4 Uncharacterized conserved protein compare
Ga0059261_4012 +0.2 0.6 AMP nucleosidase compare
Ga0059261_1336 +0.2 1.2 transcriptional regulator, HxlR family compare
Ga0059261_4134 +0.2 0.9 tRNA compare
Ga0059261_1717 +0.2 0.8 hypothetical protein compare
Ga0059261_2695 +0.2 1.5 Methyltransferase domain compare
Ga0059261_0112 +0.2 1.4 Acetyltransferase (GNAT) family compare
Ga0059261_0426 +0.2 1.5 hypothetical protein compare
Ga0059261_3535 +0.2 1.7 Methyltransferase domain compare
Ga0059261_2966 +0.2 0.8 2-deoxy-D-gluconate 3-dehydrogenase compare
Ga0059261_0749 +0.2 1.0 Membrane transporters of cations and cationic drugs compare


Specific Phenotypes

None in this experiment

For Sphingomonas koreensis DSMZ 15582 in stress experiments

For stress Cobalt chloride hexahydrate across organisms