Experiment set3IT086 for Pseudomonas fluorescens FW300-N2E2

Compare to:

inner cut, LB soft agar motility assay

Genes with specific phenotypes:

  gene name fitness t score description  
Pf6N2E2_2585 -6.4 -7.7 Flagellar hook-length control protein FliK conserved
Pf6N2E2_2570 -6.2 -6.0 Signal transduction histidine kinase CheA (EC 2.7.3.-) conserved
Pf6N2E2_2602 -6.1 -8.3 Flagellin protein FlaA compare
Pf6N2E2_2622 -5.4 -13.0 Flagellar hook-associated protein FlgL conserved
Pf6N2E2_2575 -5.3 -9.6 Flagellar biosynthesis protein FlhF compare
Pf6N2E2_2623 -5.3 -14.4 Flagellar hook-associated protein FlgK conserved
Pf6N2E2_2563 -5.1 -15.5 FIG00953562: hypothetical protein compare
Pf6N2E2_2710 -4.8 -5.9 FIG00953701: hypothetical protein compare
Pf6N2E2_2600 -4.6 -13.0 Flagellar hook-associated protein FliD conserved
Pf6N2E2_2568 -4.4 -7.4 Flagellar motor rotation protein MotA conserved
Pf6N2E2_2565 -4.4 -11.4 CheW domain protein conserved
Pf6N2E2_5693 -4.3 -11.2 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) conserved
Pf6N2E2_2569 -4.2 -7.8 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) conserved
Pf6N2E2_2303 -3.8 -7.2 Aerotaxis receptor Aer conserved
Pf6N2E2_69 -3.5 -8.1 Probable type IV pilus assembly FimV-related transmembrane protein conserved
Pf6N2E2_2566 -3.3 -6.8 Chromosome (plasmid) partitioning protein ParA conserved
Pf6N2E2_2567 -3.2 -5.0 Flagellar motor rotation protein MotB conserved
Pf6N2E2_5589 -3.2 -5.7 Sodium-type flagellar protein motY precursor conserved
Pf6N2E2_5129 -2.7 -11.8 ClpB protein conserved
Pf6N2E2_5390 -2.5 -10.2 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf6N2E2_5893 -2.4 -6.5 FIG00956448: hypothetical protein conserved
Pf6N2E2_5184 -2.0 -7.6 Chromosome segregation ATPases conserved
Pf6N2E2_584 -2.0 -7.7 ABC transporter, periplasmic substrate-binding protein conserved
Pf6N2E2_2596 -1.9 -6.9 Flagellar sensor histidine kinase FleS conserved
Pf6N2E2_2194 -1.9 -7.6 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) compare
Pf6N2E2_582 -1.8 -6.7 Oligopeptide transport system permease protein OppC (TC 3.A.1.5.1) compare
Pf6N2E2_2192 -1.8 -7.4 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data) compare
Pf6N2E2_2399 -1.7 -5.7 Cytochrome c-type biogenesis protein CcmG/DsbE, thiol:disulfide oxidoreductase compare
Pf6N2E2_583 -1.7 -6.6 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf6N2E2_2763 -1.6 -5.9 Predicted signal transduction protein conserved
Pf6N2E2_2305 -1.3 -6.5 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_5491 +1.3 8.5 FOG: GGDEF domain conserved
Pf6N2E2_4926 +1.3 8.5 hypothetical protein compare
Pf6N2E2_5278 +1.3 8.1 Signal transduction histidine kinase compare
Pf6N2E2_1678 +1.4 6.9 Major facilitator family transporter compare
Pf6N2E2_2302 +1.6 5.3 CAAX amino terminal protease family protein compare
Pf6N2E2_816 +1.7 8.0 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf6N2E2_818 +1.8 6.7 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_4616 +1.9 9.2 type IV pilus biogenesis protein PilJ conserved
Pf6N2E2_2329 +2.0 11.4 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) conserved
Pf6N2E2_815 +2.2 12.6 Signal transduction histidine kinase compare
Pf6N2E2_3871 +2.2 13.0 FIG00553872: hypothetical protein compare
Pf6N2E2_5872 +2.6 8.0 Sensor histidine kinase/response regulator compare
Pf6N2E2_5873 +3.0 8.6 FIG00953467: hypothetical protein compare
Pf6N2E2_3508 +3.0 21.9 Probable two-component response regulator conserved
Pf6N2E2_3827 +3.4 7.5 FIG00955429: hypothetical protein conserved


Specific phenotypes for motility Agar across organisms