Experiment set3IT086 for Pseudomonas fluorescens FW300-N2E2

Compare to:

inner cut, LB soft agar motility assay

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2578 -7.3 -3.8 Flagellar biosynthesis protein FliR compare
Pf6N2E2_2628 -7.1 -4.9 Flagellar basal-body rod protein FlgF compare
Pf6N2E2_5695 -6.7 -6.6 Flagellar basal-body rod protein FlgC compare
Pf6N2E2_2582 -6.5 -3.9 Flagellar motor switch protein FliN compare
Pf6N2E2_2592 -6.5 -4.5 Flagellar motor switch protein FliG compare
Pf6N2E2_2585 -6.4 -7.7 Flagellar hook-length control protein FliK conserved
Pf6N2E2_2627 -6.2 -7.2 Flagellar basal-body rod protein FlgG compare
Pf6N2E2_2579 -6.2 -4.3 Flagellar biosynthesis protein FliQ compare
Pf6N2E2_2570 -6.2 -6.0 Signal transduction histidine kinase CheA (EC 2.7.3.-) conserved
Pf6N2E2_2573 -6.2 -4.3 RNA polymerase sigma factor for flagellar operon conserved
Pf6N2E2_2602 -6.1 -8.3 Flagellin protein FlaA compare
Pf6N2E2_2583 -5.9 -8.2 Flagellar motor switch protein FliM compare
Pf6N2E2_2580 -5.8 -4.0 Flagellar biosynthesis protein FliP compare
Pf6N2E2_2176 -5.8 -3.5 Amidases related to nicotinamidase compare
Pf6N2E2_2591 -5.8 -6.3 Flagellar assembly protein FliH compare
Pf6N2E2_2626 -5.8 -11.1 Flagellar L-ring protein FlgH compare
Pf6N2E2_2597 -5.5 -9.9 Flagellar regulatory protein FleQ compare
Pf6N2E2_2590 -5.5 -11.9 Flagellum-specific ATP synthase FliI compare
Pf6N2E2_5697 -5.4 -16.1 Flagellar hook protein FlgE compare
Pf6N2E2_2622 -5.4 -13.0 Flagellar hook-associated protein FlgL conserved
Pf6N2E2_2624 -5.3 -8.2 Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-) compare
Pf6N2E2_2318 -5.3 -9.5 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2575 -5.3 -9.6 Flagellar biosynthesis protein FlhF compare
Pf6N2E2_5691 -5.3 -8.4 Flagellar basal-body P-ring formation protein FlgA compare
Pf6N2E2_2623 -5.3 -14.4 Flagellar hook-associated protein FlgK conserved
Pf6N2E2_4579 -5.3 -3.2 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_445 -5.2 -6.2 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Pf6N2E2_4451 -5.2 -6.2 FIG139438: lipoprotein B compare
Pf6N2E2_3792 -5.2 -7.1 Glucans biosynthesis protein G precursor compare
Pf6N2E2_2320 -5.2 -3.6 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_2576 -5.1 -15.8 Flagellar biosynthesis protein FlhA compare
Pf6N2E2_2563 -5.1 -15.5 FIG00953562: hypothetical protein compare
Pf6N2E2_5694 -4.9 -7.1 Flagellar basal-body rod protein FlgB compare
Pf6N2E2_4181 -4.9 -1.5 Organic hydroperoxide resistance protein compare
Pf6N2E2_2507 -4.9 -4.7 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_2625 -4.9 -5.3 Flagellar P-ring protein FlgI compare
Pf6N2E2_5150 -4.9 -6.7 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf6N2E2_5006 -4.9 -8.7 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4160 -4.8 -1.5 Cytochrome c5 compare
Pf6N2E2_3677 -4.8 -14.7 Sensory box/GGDEF family protein compare
Pf6N2E2_3791 -4.8 -10.2 Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-) compare
Pf6N2E2_5340 -4.8 -3.3 Stringent starvation protein A compare
Pf6N2E2_2710 -4.8 -5.9 FIG00953701: hypothetical protein compare
Pf6N2E2_5689 -4.7 -5.0 Flagellar biosynthesis protein FlgN compare
Pf6N2E2_2753 -4.7 -3.3 HtrA protease/chaperone protein compare
Pf6N2E2_5771 -4.6 -8.1 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_2600 -4.6 -13.0 Flagellar hook-associated protein FliD conserved
Pf6N2E2_5160 -4.6 -1.9 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_5014 -4.5 -1.3 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_2568 -4.4 -7.4 Flagellar motor rotation protein MotA conserved
Pf6N2E2_2593 -4.4 -6.0 Flagellar M-ring protein FliF compare
Pf6N2E2_5338 -4.4 -10.8 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2565 -4.4 -11.4 CheW domain protein conserved
Pf6N2E2_2181 -4.3 -2.2 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_5693 -4.3 -11.2 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) conserved
Pf6N2E2_2574 -4.3 -2.5 Flagellar synthesis regulator FleN compare
Pf6N2E2_5339 -4.2 -7.1 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2189 -4.2 -6.5 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_2577 -4.2 -7.8 Flagellar biosynthesis protein FlhB compare
Pf6N2E2_2569 -4.2 -7.8 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) conserved
Pf6N2E2_2506 -4.2 -13.8 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_5527 -4.2 -2.8 Cold shock protein CspC compare
Pf6N2E2_2823 -4.1 -5.6 Multidrug efflux RND membrane fusion protein MexC compare
Pf6N2E2_2825 -4.1 -2.8 RND efflux system, outer membrane lipoprotein CmeC compare
Pf6N2E2_2869 -4.0 -2.1 Peptide deformylase (EC 3.5.1.88) compare
Pf6N2E2_3656 -4.0 -7.4 Probable transcription regulator Mig-14 compare
Pf6N2E2_4159 -4.0 -4.5 Cytochrome c4 compare
Pf6N2E2_1136 -4.0 -2.2 Transcriptional regulator, TetR family compare
Pf6N2E2_5430 -4.0 -11.2 Transglycosylase, Slt family compare
Pf6N2E2_4153 -4.0 -2.0 Sensory box histidine kinase compare
Pf6N2E2_2564 -4.0 -4.6 Positive regulator of CheA protein activity (CheW) conserved
Pf6N2E2_2594 -3.9 -8.1 Flagellar hook-basal body complex protein FliE compare
Pf6N2E2_2180 -3.9 -4.6 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
Pf6N2E2_2277 -3.8 -3.5 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_75 -3.8 -4.0 Colicin V production protein compare
Pf6N2E2_4369 -3.8 -2.6 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_4611 -3.8 -5.1 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_2303 -3.8 -7.2 Aerotaxis receptor Aer conserved
Pf6N2E2_3611 -3.7 -1.9 HflC protein compare
Pf6N2E2_2317 -3.7 -5.2 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2824 -3.7 -10.9 RND efflux system, inner membrane transporter CmeB compare
Pf6N2E2_3655 -3.7 -12.5 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_2755 -3.6 -2.0 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_1776 -3.6 -3.1 Chemotaxis protein CheD compare
Pf6N2E2_2586 -3.6 -2.1 Hpt domain protein compare
Pf6N2E2_69 -3.5 -8.1 Probable type IV pilus assembly FimV-related transmembrane protein conserved
Pf6N2E2_2510 -3.5 -5.3 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_4464 -3.5 -3.5 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases / CDP-6-deoxy-delta-3,4-glucoseen reductase-like compare
Pf6N2E2_2508 -3.4 -4.1 hypothetical protein compare
Pf6N2E2_3516 -3.4 -2.6 Probable transmembrane protein compare
Pf6N2E2_3349 -3.3 -2.9 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_2311 -3.3 -8.7 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2313 -3.3 -4.2 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_4353 -3.3 -3.7 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2566 -3.3 -6.8 Chromosome (plasmid) partitioning protein ParA conserved
Pf6N2E2_4762 -3.3 -2.9 Biotin synthesis protein BioH compare
Pf6N2E2_3617 -3.3 -4.8 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_4416 -3.2 -3.8 Tyrosine recombinase XerC compare
Pf6N2E2_2589 -3.2 -3.1 Flagellar protein FliJ compare
Pf6N2E2_5337 -3.2 -5.0 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_4810 -3.2 -8.5 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Pf6N2E2_2567 -3.2 -5.0 Flagellar motor rotation protein MotB conserved
Pf6N2E2_2509 -3.2 -1.9 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5589 -3.2 -5.7 Sodium-type flagellar protein motY precursor conserved
Pf6N2E2_4585 -3.1 -11.2 Cell division protein FtsX compare
Pf6N2E2_2754 -3.1 -4.1 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf6N2E2_4763 -3.1 -9.6 Biotin synthesis protein BioC compare
Pf6N2E2_4797 -3.1 -1.8 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_4584 -3.0 -3.3 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_4803 -3.0 -2.4 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_2599 -3.0 -4.5 Flagellar biosynthesis protein FliS conserved
Pf6N2E2_3661 -3.0 -5.8 hypothetical protein compare
Pf6N2E2_5705 -3.0 -2.8 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_2527 -2.9 -4.1 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_156 -2.9 -2.6 Carbon storage regulator compare
Pf6N2E2_2518 -2.9 -3.3 Cyclohexadienyl dehydrogenase (EC 1.3.1.12)(EC 1.3.1.43) / 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Pf6N2E2_2752 -2.8 -9.7 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_3607 -2.8 -8.7 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_2572 -2.8 -3.4 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5178 -2.8 -2.7 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_4764 -2.8 -4.9 Dethiobiotin synthetase (EC 6.3.3.3) compare
Pf6N2E2_3786 -2.8 -3.9 Twin-arginine translocation protein TatC compare
Pf6N2E2_3612 -2.8 -3.0 HflK protein compare
Pf6N2E2_4631 -2.8 -10.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Pf6N2E2_4417 -2.8 -4.2 Protein of unknown function DUF484 compare
Pf6N2E2_4352 -2.8 -4.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_5129 -2.7 -11.8 ClpB protein conserved
Pf6N2E2_4372 -2.7 -5.8 FIG00460773: hypothetical protein compare
Pf6N2E2_3658 -2.6 -7.0 Lipid A core - O-antigen ligase and related enzymes compare
Pf6N2E2_2201 -2.6 -4.3 Transmembrane regulator protein PrtR compare
Pf6N2E2_2790 -2.6 -3.0 Helix-turn-helix motif compare
Pf6N2E2_3753 -2.6 -9.8 DamX, an inner membrane protein involved in bile resistance compare
Pf6N2E2_1147 -2.6 -2.3 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
Pf6N2E2_5252 -2.6 -2.2 FIG00956396: hypothetical protein compare
Pf6N2E2_2340 -2.6 -5.3 Transcriptional regulator, GntR family compare
Pf6N2E2_3461 -2.6 -1.2 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4273 -2.5 -7.4 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_5049 -2.5 -1.8 acetyltransferase, GNAT family compare
Pf6N2E2_2646 -2.5 -1.8 FIG00953416: hypothetical protein compare
Pf6N2E2_5963 -2.5 -4.2 lipoprotein, putative conserved
Pf6N2E2_2274 -2.5 -4.5 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare
Pf6N2E2_5390 -2.5 -10.2 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf6N2E2_2999 -2.5 -1.9 probable tail fiber assembly protein compare
Pf6N2E2_4624 -2.5 -1.0 Phosphoribosyl-dephospho-CoA transferase (EC 2.7.7.-) compare
Pf6N2E2_3807 -2.5 -5.1 Histidine utilization repressor compare
Pf6N2E2_4889 -2.5 -4.8 Putative transport protein compare
Pf6N2E2_6064 -2.4 -3.9 2-methylaconitate isomerase compare
Pf6N2E2_3984 -2.4 -9.4 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf6N2E2_5584 -2.4 -2.6 Bacterioferritin-associated ferredoxin compare
Pf6N2E2_2707 -2.4 -3.8 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) compare
Pf6N2E2_2514 -2.4 -5.2 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_5893 -2.4 -6.5 FIG00956448: hypothetical protein conserved
Pf6N2E2_4276 -2.4 -5.0 Phosphogluconate repressor HexR, RpiR family compare
Pf6N2E2_288 -2.4 -2.3 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_5291 -2.4 -13.1 Fumarylacetoacetase (EC 3.7.1.2) compare
Pf6N2E2_4205 -2.3 -4.3 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2552 -2.3 -4.5 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_1834 -2.3 -1.5 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf6N2E2_4761 -2.3 -8.4 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Pf6N2E2_4987 -2.3 -1.2 MaoC-like domain protein compare
Pf6N2E2_625 -2.3 -4.4 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_5242 -2.3 -2.3 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4759 -2.2 -9.7 Biotin synthase (EC 2.8.1.6) compare
Pf6N2E2_1162 -2.2 -1.7 Transmembrane amino acid efflux protein compare
Pf6N2E2_4204 -2.2 -1.6 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_5944 -2.2 -5.3 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) compare
Pf6N2E2_4168 -2.2 -5.3 Zinc ABC transporter, inner membrane permease protein ZnuB compare
Pf6N2E2_621 -2.2 -7.2 TPR domain protein in aerotolerance operon compare
Pf6N2E2_4399 -2.2 -5.5 GGDEF domain/EAL domain protein compare
Pf6N2E2_2310 -2.2 -8.4 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_2323 -2.2 -2.1 Fumarate and nitrate reduction regulatory protein compare
Pf6N2E2_3303 -2.1 -3.2 Sensor histidine kinase PrrB (RegB) (EC 2.7.3.-) compare
Pf6N2E2_4120 -2.1 -8.0 Trk system potassium uptake protein TrkA compare
Pf6N2E2_2309 -2.1 -2.2 hypothetical protein compare
Pf6N2E2_2010 -2.1 -2.1 hypothetical protein compare
Pf6N2E2_6063 -2.1 -5.8 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf6N2E2_5088 -2.1 -1.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_919 -2.0 -1.6 FIG00954373: hypothetical protein compare
Pf6N2E2_5184 -2.0 -7.6 Chromosome segregation ATPases conserved
Pf6N2E2_70 -2.0 -3.2 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_3521 -2.0 -4.5 Sensor histidine kinase/response regulator compare
Pf6N2E2_5068 -2.0 -9.2 putative Cytochrome bd2, subunit I compare
Pf6N2E2_1987 -2.0 -1.8 hypothetical protein compare
Pf6N2E2_4047 -2.0 -4.5 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf6N2E2_584 -2.0 -7.7 ABC transporter, periplasmic substrate-binding protein conserved
Pf6N2E2_5794 -1.9 -1.7 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_2596 -1.9 -6.9 Flagellar sensor histidine kinase FleS conserved
Pf6N2E2_3151 -1.9 -4.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf6N2E2_1124 -1.9 -2.4 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_5646 -1.9 -1.3 PROBABLE MEMBRANE PROTEIN compare
Pf6N2E2_2194 -1.9 -7.6 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data) compare
Pf6N2E2_3285 -1.9 -5.1 Rod shape-determining protein MreD compare
Pf6N2E2_2013 -1.9 -1.1 hypothetical protein compare
Pf6N2E2_623 -1.9 -1.1 FIG00954674: hypothetical protein compare
Pf6N2E2_5223 -1.9 -5.0 Molybdopterin biosynthesis protein MoeB compare
Pf6N2E2_6140 -1.9 -1.0 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_40 -1.9 -3.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_204 -1.9 -1.7 hypothetical protein compare
Pf6N2E2_4206 -1.9 -1.7 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_339 -1.9 -2.6 Glutathione-regulated potassium-efflux system protein KefC compare


Specific Phenotypes

For 46 genes in this experiment

For motility Agar in Pseudomonas fluorescens FW300-N2E2

For motility Agar across organisms