Experiment set3IT086 for Methanococcus maripaludis S2

Compare to:

H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2

200 most important genes:

  gene name fitness t score description  
MMP_RS01385 -5.3 -1.6 imidazole glycerol phosphate synthase subunit HisH compare
MMP_RS07005 -3.9 -1.6 4Fe-4S binding protein compare
MMP_RS00300 -3.7 -1.9 6 7-dimethyl-8-ribityllumazine synthase compare
MMP_RS03315 -3.7 -2.9 ferrous iron transport protein A compare
MMP_RS05285 -3.7 -15.2 MMPL family transporter compare
MMP_RS01005 -3.7 -3.8 riboflavin synthase compare
MMP_RS05280 -3.6 -18.6 COG1361 S-layer family protein compare
MMP_RS02010 -3.4 -13.8 PHP domain-containing protein compare
MMP_RS08720 -3.3 -3.3 4Fe-4S binding protein compare
MMP_RS05920 -3.1 -1.6 50S ribosomal protein L37e compare
MMP_RS08820 -3.1 -9.3 hypothetical protein compare
MMP_RS06285 -3.1 -4.1 precorrin-6Y C5 15-methyltransferase (decarboxylating) subunit CbiT compare
MMP_RS06315 -3.0 -2.5 cobalt-precorrin-7 (C(5))-methyltransferase compare
MMP_RS07845 -3.0 -5.8 LL-diaminopimelate aminotransferase compare
MMP_RS01380 -3.0 -8.7 PHP domain-containing protein compare
MMP_RS01225 -2.9 -9.4 DUF5379 domain-containing protein compare
MMP_RS00895 -2.9 -8.4 hypothetical protein compare
MMP_RS01500 -2.8 -6.1 CBS domain-containing protein compare
MMP_RS01175 -2.8 -4.6 triphosphoribosyl-dephospho-CoA synthase compare
MMP_RS05290 -2.8 -11.3 TetR/AcrR family transcriptional regulator compare
MMP_RS03700 -2.8 -11.9 sodium:proton antiporter compare
MMP_RS06355 -2.7 -4.2 molybdenum cofactor biosynthesis protein MoaE compare
MMP_RS00110 -2.7 -6.0 hypothetical protein compare
MMP_RS03035 -2.7 -7.9 4-hydroxy-tetrahydrodipicolinate synthase compare
MMP_RS08745 -2.6 -11.2 CDP-2 3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMP_RS07635 -2.6 -8.5 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMP_RS07730 -2.5 -3.4 pyruvate synthase subunit beta compare
MMP_RS02195 -2.5 -6.9 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-methylthiotransferase compare
MMP_RS08635 -2.5 -3.4 UbiA family prenyltransferase compare
MMP_RS02900 -2.5 -1.4 imidazoleglycerol-phosphate dehydratase HisB compare
MMP_RS06120 -2.5 -5.2 UPF0147 family protein compare
MMP_RS08300 -2.4 -2.8 metal-sulfur cluster assembly factor compare
MMP_RS04605 -2.4 -5.7 cobalt ECF transporter T component CbiQ compare
MMP_RS08790 -2.4 -5.1 translation initiation factor IF-2 subunit alpha compare
MMP_RS02800 -2.4 -7.4 nucleotidyltransferase domain-containing protein compare
MMP_RS05515 -2.4 -14.7 cyclic pyranopterin monophosphate synthase MoaC compare
MMP_RS07545 -2.4 -2.2 HTH domain-containing protein compare
MMP_RS01020 -2.4 -2.4 3 4-dihydroxy-2-butanone-4-phosphate synthase compare
MMP_RS01220 -2.4 -9.4 hypothetical protein compare
MMP_RS01755 -2.4 -3.1 DUF2097 domain-containing protein compare
MMP_RS07750 -2.4 -8.3 DUF357 domain-containing protein compare
MMP_RS00515 -2.3 -1.9 DUF655 domain-containing protein compare
MMP_RS07390 -2.3 -5.5 cell division protein FtsZ compare
MMP_RS07755 -2.3 -3.2 DUF555 domain-containing protein compare
MMP_RS04710 -2.3 -3.8 hypothetical protein compare
MMP_RS02240 -2.3 -5.9 methanogenesis marker 7 protein compare
MMP_RS02245 -2.3 -7.1 hypothetical protein compare
MMP_RS06350 -2.3 -7.8 HesA/MoeB/ThiF family protein compare
MMP_RS06925 -2.2 -5.0 ribonuclease VapC4 compare
MMP_RS07075 -2.2 -7.2 phosphomannomutase/phosphoglucomutase compare
MMP_RS06670 -2.2 -8.0 glucose-6-phosphate isomerase compare
MMP_RS06625 -2.2 -5.3 DNA primase compare
MMP_RS04615 -2.2 -5.0 PDGLE domain-containing protein compare
MMP_RS06885 -2.2 -5.1 50S ribosome-binding GTPase compare
MMP_RS03475 -2.2 -1.4 hypothetical protein compare
MMP_RS06900 -2.2 -4.8 coenzyme F420-reducing hydrogenase FrhD protein compare
MMP_RS02135 -2.2 -8.0 DUF5612 domain-containing protein compare
MMP_RS03015 -2.2 -12.8 GTP 3' 8-cyclase MoaA compare
MMP_RS06295 -2.2 -9.0 methanogenesis marker 14 protein compare
MMP_RS00685 -2.2 -7.1 2-phospho-L-lactate guanylyltransferase compare
MMP_RS01610 -2.2 -5.9 hypothetical protein compare
MMP_RS08105 -2.2 -10.4 6-carboxyhexanoate--CoA ligase compare
MMP_RS05815 -2.1 -3.9 NOL1/NOP2/sun family putative RNA methylase compare
MMP_RS04685 -2.1 -5.5 DUF126 domain-containing protein compare
MMP_RS04500 -2.1 -15.4 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMP_RS08435 -2.1 -4.8 Era-like GTP-binding protein compare
MMP_RS06270 -2.1 -8.2 TIGR00300 family protein compare
MMP_RS05640 -2.1 -7.9 UTP--glucose-1-phosphate uridylyltransferase GalU compare
MMP_RS05930 -2.1 -4.5 3-isopropylmalate dehydratase large subunit compare
MMP_RS03960 -2.1 -2.2 hypothetical protein compare
MMP_RS02355 -2.1 -6.0 30S ribosomal protein S27ae compare
MMP_RS08210 -2.1 -3.9 phosphatidylglycerophosphatase A compare
MMP_RS08715 -2.1 -3.6 formylmethanofuran dehydrogenase subunit B compare
MMP_RS06340 -2.1 -10.6 phosphoadenosine phosphosulfate reductase family protein compare
MMP_RS03400 -2.1 -4.9 archease compare
MMP_RS02345 -2.1 -6.0 GTP-dependent dephospho-CoA kinase family protein compare
MMP_RS07630 -2.1 -2.8 ATP-binding cassette domain-containing protein compare
MMP_RS02280 -2.0 -1.7 DUF211 domain-containing protein compare
MMP_RS08460 -2.0 -4.0 proteasome-activating nucleotidase compare
MMP_RS06730 -2.0 -3.9 phosphopantothenate/pantothenate synthetase compare
MMP_RS05555 -2.0 -2.8 DUF4040 domain-containing protein compare
MMP_RS01725 -2.0 -6.6 class I SAM-dependent methyltransferase family protein compare
MMP_RS05250 -2.0 -2.9 NFYB/HAP3 family transcription factor subunit compare
MMP_RS08100 -2.0 -9.8 8-amino-7-oxononanoate synthase compare
MMP_RS08440 -2.0 -5.7 cell division protein SepF compare
MMP_RS07645 -2.0 -8.2 aldehyde dehydrogenase family protein compare
MMP_RS08095 -2.0 -9.9 dethiobiotin synthase compare
MMP_RS03435 -2.0 -4.1 ketol-acid reductoisomerase compare
MMP_RS06370 -2.0 -6.7 biotin synthase BioB compare
MMP_RS04720 -2.0 -6.2 DedA family protein compare
MMP_RS09020 -1.9 -2.9 hypothetical protein compare
MMP_RS00810 -1.9 -9.8 topoisomerase DNA-binding C4 zinc finger domain-containing protein compare
MMP_RS00115 -1.9 -12.6 radical SAM protein compare
MMP_RS01830 -1.9 -3.6 tRNA-Val compare
MMP_RS02190 -1.9 -5.7 sulfopyruvate decarboxylase subunit alpha compare
MMP_RS07350 -1.9 -3.0 preprotein translocase subunit Sec61beta compare
MMP_RS07605 -1.9 -6.1 diadenylate cyclase compare
MMP_RS06020 -1.9 -6.3 archaeoflavoprotein AfpA compare
MMP_RS03445 -1.9 -2.2 methanogenesis marker 17 protein compare
MMP_RS01365 -1.8 -3.6 archaeal proteasome endopeptidase complex subunit alpha compare
MMP_RS03640 -1.8 -5.7 archaeal proteasome endopeptidase complex subunit beta compare
MMP_RS07695 -1.8 -7.6 DUF3236 domain-containing protein compare
MMP_RS03600 -1.8 -4.7 triose-phosphate isomerase compare
MMP_RS00725 -1.8 -9.9 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC compare
MMP_RS03155 -1.8 -8.8 precorrin-6A reductase compare
MMP_RS03580 -1.8 -5.3 signal recognition particle-docking protein FtsY compare
MMP_RS07600 -1.8 -4.8 Ni-sirohydrochlorin a c-diamide synthase compare
MMP_RS06895 -1.8 -3.1 selenocysteine-specific translation elongation factor compare
MMP_RS03095 -1.8 -10.2 diphthine synthase compare
MMP_RS06400 -1.8 -3.1 4Fe-4S binding protein compare
MMP_RS07580 -1.7 -5.7 DUF356 domain-containing protein compare
MMP_RS04780 -1.7 -3.6 ribonuclease P compare
MMP_RS04775 -1.7 -5.9 adenosylhomocysteinase compare
MMP_RS00320 -1.7 -4.3 class I SAM-dependent methyltransferase compare
MMP_RS01800 -1.7 -6.4 TIGR00303 family protein compare
MMP_RS07380 -1.7 -3.2 transcription elongation factor Spt5 compare
MMP_RS00305 -1.7 -4.2 phosphoribosyl-ATP diphosphatase compare
MMP_RS06865 -1.7 -3.2 HypC/HybG/HupF family hydrogenase formation chaperone compare
MMP_RS03025 -1.7 -6.8 molybdenum cofactor guanylyltransferase compare
MMP_RS04585 -1.7 -9.9 AIR synthase related protein compare
MMP_RS04850 -1.6 -13.5 UPF0254 family protein compare
MMP_RS00735 -1.6 -6.3 5 10-methenyltetrahydromethanopterin hydrogenase compare
MMP_RS06630 -1.6 -2.0 UPF0058 family protein compare
MMP_RS06475 -1.6 -5.5 FAD-dependent oxidoreductase compare
MMP_RS05425 -1.6 -4.8 monovalent cation/H+ antiporter complex subunit F compare
MMP_RS03110 -1.6 -6.9 glycosyltransferase family 2 protein compare
MMP_RS06215 -1.6 -5.2 30S ribosomal protein S6e compare
MMP_RS00730 -1.6 -9.6 5 10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdB compare
MMP_RS06980 -1.6 -7.9 tRNA 2-thiocytidine biosynthesis TtcA family protein compare
MMP_RS07195 -1.6 -11.2 M20 family metallo-hydrolase compare
MMP_RS01325 -1.6 -2.7 dihydroneopterin aldolase family protein compare
MMP_RS07735 -1.5 -1.5 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha compare
MMP_RS04955 -1.5 -6.8 DNA topoisomerase I compare
MMP_RS08165 -1.5 -1.9 phosphoglycerate dehydrogenase compare
MMP_RS07425 -1.5 -6.6 GTP-binding protein compare
MMP_RS00520 -1.5 -2.5 RNA polymerase Rpb4 family protein compare
MMP_RS02145 -1.5 -6.8 winged helix-turn-helix transcriptional regulator compare
MMP_RS06105 -1.5 -8.9 hydrogenase maturation peptidase HycI compare
MMP_RS01960 -1.4 -0.9 hypothetical protein compare
MMP_RS04620 -1.4 -7.6 cobalt transporter CbiM compare
MMP_RS01955 -1.4 -2.2 hypothetical protein compare
MMP_RS00050 -1.4 -7.9 AarF/UbiB family protein compare
MMP_RS05345 -1.4 -7.3 hypothetical protein compare
MMP_RS03385 -1.4 -1.8 cation diffusion facilitator family transporter compare
MMP_RS02875 -1.4 -9.2 chorismate pyruvate-lyase family protein compare
MMP_RS06395 -1.4 -3.6 ThiF family adenylyltransferase compare
MMP_RS04890 -1.4 -1.2 adenylyltransferase/cytidyltransferase family protein compare
MMP_RS06940 -1.4 -3.4 polyprenyl diphosphate synthase compare
MMP_RS04870 -1.4 -5.2 TIGR02253 family HAD-type hydrolase compare
MMP_RS07575 -1.4 -2.3 RNA ligase partner protein compare
MMP_RS01840 -1.3 -6.6 TIGR00289 family protein compare
MMP_RS07420 -1.3 -4.4 metalloregulator ArsR/SmtB family transcription factor compare
MMP_RS06110 -1.3 -3.4 ATP-dependent protease LonB compare
MMP_RS01905 -1.3 -9.5 glycosyltransferase compare
MMP_RS06130 -1.3 -4.8 peptidylprolyl isomerase compare
MMP_RS07540 -1.3 -4.2 CBS domain-containing protein compare
MMP_RS03140 -1.3 -9.9 hypothetical protein compare
MMP_RS00695 -1.3 -1.2 biotin--[acetyl-CoA-carboxylase] ligase compare
MMP_RS05540 -1.3 -3.7 hypothetical protein compare
MMP_RS00720 -1.3 -8.5 metal-dependent hydrolase compare
MMP_RS01665 -1.3 -3.3 DUF2111 domain-containing protein compare
MMP_RS01795 -1.3 -2.0 methanogenesis marker 6 protein compare
MMP_RS01910 -1.3 -7.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMP_RS01900 -1.3 -9.0 hypothetical protein compare
MMP_RS00750 -1.3 -4.2 fumarate hydratase compare
MMP_RS01915 -1.3 -8.7 DUF354 domain-containing protein compare
MMP_RS07200 -1.2 -7.7 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMP_RS08445 -1.2 -5.1 DUF2099 family protein compare
MMP_RS00060 -1.2 -1.6 3-dehydroquinate synthase II compare
MMP_RS08650 -1.2 -4.5 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMP_RS05925 -1.2 -5.8 small nuclear ribonucleoprotein compare
MMP_RS05525 -1.2 -5.9 calcium/sodium antiporter compare
MMP_RS01920 -1.1 -8.4 glycosyltransferase family 2 protein compare
MMP_RS06230 -1.1 -2.7 helix-turn-helix domain-containing protein compare
MMP_RS01925 -1.1 -5.7 DUF1616 domain-containing protein compare
MMP_RS07700 -1.1 -7.8 DUF1188 domain-containing protein compare
MMP_RS04875 -1.1 -3.7 energy-converting hydrogenase B subunit P compare
MMP_RS08330 -1.1 -5.3 NADH-quinone oxidoreductase subunit H compare
MMP_RS06770 -1.1 -7.0 DHH family phosphoesterase compare
MMP_RS08195 -1.1 -6.6 hypothetical protein compare
MMP_RS00325 -1.1 -2.4 RNA-binding protein compare
MMP_RS01335 -1.1 -3.6 prefoldin subunit beta compare
MMP_RS06725 -1.0 -7.9 hypothetical protein compare
MMP_RS01415 -1.0 -4.1 DUF2067 domain-containing protein compare
MMP_RS07525 -1.0 -6.8 4Fe-4S binding protein compare
MMP_RS03145 -1.0 -5.9 fibrillarin-like rRNA/tRNA 2'-O-methyltransferase compare
MMP_RS02165 -1.0 -6.3 tRNA-dihydrouridine synthase compare
MMP_RS01895 -1.0 -7.7 flippase compare
MMP_RS05845 -1.0 -1.9 tRNA-intron lyase compare
MMP_RS07090 -1.0 -6.9 tRNA (adenine-N1)-methyltransferase compare
MMP_RS05450 -1.0 -4.2 CoB--CoM heterodisulfide reductase subunit C compare
MMP_RS05440 -1.0 -6.3 winged helix-turn-helix transcriptional regulator compare
MMP_RS00985 -1.0 -4.7 CDC48 family AAA ATPase compare
MMP_RS01045 -0.9 -6.4 diphthamide biosynthesis enzyme Dph2 compare
MMP_RS05445 -0.9 -5.5 CoB--CoM heterodisulfide reductase subunit B compare
MMP_RS07385 -0.9 -1.1 protein translocase SEC61 complex subunit gamma compare
MMP_RS08785 -0.9 -1.7 RNA-protein complex protein Nop10 compare
MMP_RS08595 -0.9 -1.6 flagellar protein C compare
MMP_RS00315 -0.9 -3.5 Nif3-like dinuclear metal center hexameric protein compare
MMP_RS08915 -0.9 -2.7 2 5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate reductase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis S2 in rich t1 experiments