Experiment set3IT086 for Methanococcus maripaludis JJ

Compare to:

formate N-free with 10mM Ammonium chloride

200 most important genes:

  gene name fitness t score description  
MMJJ_RS02035 -6.1 -8.3 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS00235 -6.0 -22.8 hypothetical protein compare
MMJJ_RS08080 -4.8 -11.5 TIGR00300 family protein compare
MMJJ_RS06855 -4.6 -2.5 DUF2104 domain-containing protein compare
MMJJ_RS06625 -4.5 -3.9 pyruvate synthase subunit PorB compare
MMJJ_RS04200 -4.3 -7.6 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS06510 -4.2 -4.9 LL-diaminopimelate aminotransferase compare
MMJJ_RS05575 -4.2 -6.1 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS08320 -4.2 -3.2 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS03840 -4.0 -4.8 DHH family phosphoesterase compare
MMJJ_RS03760 -4.0 -5.2 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS01750 -4.0 -4.1 ferrous iron transport protein A compare
MMJJ_RS00125 -4.0 -2.7 KEOPS complex subunit Cgi121 compare
MMJJ_RS04485 -3.9 -10.0 riboflavin synthase compare
MMJJ_RS06695 -3.9 -5.2 amidohydrolase compare
MMJJ_RS04970 -3.9 -3.1 DUF655 domain-containing protein compare
MMJJ_RS05450 -3.8 -18.1 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS06910 -3.8 -5.1 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS06875 -3.8 -4.3 hypothetical protein compare
MMJJ_RS00275 -3.7 -3.4 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS06860 -3.7 -6.9 hypothetical protein compare
MMJJ_RS06490 -3.6 -4.6 methanogenesis marker 2 protein compare
MMJJ_RS01415 -3.6 -4.8 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS04475 -3.6 -4.4 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS03895 -3.5 -5.7 hydrogenase expression/formation protein HypE compare
MMJJ_RS08250 -3.4 -9.1 hydrogenase maturation peptidase HycI compare
MMJJ_RS00520 -3.4 -6.5 PDGLE domain-containing protein compare
MMJJ_RS03670 -3.4 -7.1 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS01600 -3.4 -4.5 radical SAM protein compare
MMJJ_RS01935 -3.4 -4.4 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS07665 -3.3 -23.6 formate dehydrogenase subunit alpha compare
MMJJ_RS03865 -3.3 -2.6 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS07670 -3.3 -18.2 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS03580 -3.3 -5.4 TIGR00303 family protein compare
MMJJ_RS05260 -3.3 -8.3 ATP-grasp domain-containing protein compare
MMJJ_RS00270 -3.3 -5.3 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS03190 -3.2 -3.8 phosphopyruvate hydratase compare
MMJJ_RS05330 -3.2 -3.7 DNA polymerase II large subunit compare
MMJJ_RS03615 -3.2 -5.2 cobalt-precorrin-8 methylmutase compare
MMJJ_RS03110 -3.2 -5.7 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS03820 -3.2 -5.7 hydrogenase formation protein HypD compare
MMJJ_RS00450 -3.2 -2.8 DUF126 domain-containing protein compare
MMJJ_RS04730 -3.2 -4.2 tyrosine decarboxylase MfnA compare
MMJJ_RS08055 -3.1 -7.7 methanogenesis marker 14 protein compare
MMJJ_RS07380 -3.1 -11.3 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS06915 -3.1 -16.5 helix-turn-helix domain-containing protein compare
MMJJ_RS08020 -3.1 -11.1 nucleotidyltransferase domain-containing protein compare
MMJJ_RS06865 -3.1 -4.6 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS06110 -3.1 -3.6 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS03200 -3.1 -2.9 uroporphyrinogen-III synthase compare
MMJJ_RS03065 -3.1 -14.6 CBS domain-containing protein compare
MMJJ_RS00070 -3.0 -6.4 CooT family nickel-binding protein compare
MMJJ_RS04790 -3.0 -6.2 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS06840 -3.0 -5.7 nickel-dependent hydrogenase large subunit compare
MMJJ_RS06390 -3.0 -3.2 NADPH-dependent F420 reductase compare
MMJJ_RS05535 -3.0 -13.9 hypothetical protein compare
MMJJ_RS07950 -3.0 -4.5 4Fe-4S binding protein compare
MMJJ_RS06485 -3.0 -4.4 phosphoglycerate kinase compare
MMJJ_RS02090 -3.0 -6.6 tyramine--L-glutamate ligase compare
MMJJ_RS06040 -3.0 -4.1 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS07655 -2.9 -16.8 hypothetical protein compare
MMJJ_RS03270 -2.9 -2.6 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS00050 -2.9 -11.9 AAA family ATPase compare
MMJJ_RS04685 -2.9 -9.6 carbamoyltransferase HypF compare
MMJJ_RS09190 -2.8 -3.0 tryptophan synthase subunit beta compare
MMJJ_RS08340 -2.8 -6.2 archaeoflavoprotein AfpA compare
MMJJ_RS06250 -2.8 -3.8 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS05190 -2.8 -8.9 gamma carbonic anhydrase family protein compare
MMJJ_RS07785 -2.8 -4.5 fumarate reductase subunit A compare
MMJJ_RS06255 -2.8 -9.3 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS05225 -2.7 -2.5 Gar1/Naf1 family protein compare
MMJJ_RS05650 -2.7 -4.1 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS05950 -2.7 -5.2 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS01200 -2.7 -4.0 PRC-barrel domain-containing protein compare
MMJJ_RS08005 -2.7 -16.5 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS01865 -2.7 -8.6 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS07660 -2.7 -8.0 carbonic anhydrase compare
MMJJ_RS05590 -2.7 -3.3 homoserine dehydrogenase compare
MMJJ_RS03875 -2.7 -4.3 CBS domain-containing protein compare
MMJJ_RS01870 -2.7 -2.8 methanogenesis marker 15 protein compare
MMJJ_RS05610 -2.7 -5.5 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS08625 -2.6 -9.1 magnesium/cobalt transporter CorA compare
MMJJ_RS06725 -2.6 -13.4 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS09130 -2.6 -2.4 NFYB/HAP3 family transcription factor subunit compare
MMJJ_RS05620 -2.6 -6.0 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS06835 -2.6 -13.8 4Fe-4S binding protein compare
MMJJ_RS08330 -2.6 -4.9 SufD family Fe-S cluster assembly protein compare
MMJJ_RS07245 -2.6 -5.9 amidohydrolase family protein compare
MMJJ_RS01755 -2.6 -3.6 ferrous iron transport protein B compare
MMJJ_RS07640 -2.6 -20.2 cache domain-containing protein compare
MMJJ_RS06785 -2.5 -8.3 RNA ligase partner protein compare
MMJJ_RS07635 -2.5 -13.7 response regulator transcription factor compare
MMJJ_RS00355 -2.5 -3.4 ribonuclease P protein component 4 compare
MMJJ_RS01565 -2.5 -6.8 TIGR00267 family protein compare
MMJJ_RS06180 -2.5 -4.3 tryptophan--tRNA ligase compare
MMJJ_RS04520 -2.5 -7.8 coenzyme F430 synthase compare
MMJJ_RS03620 -2.5 -6.2 DUF2097 domain-containing protein compare
MMJJ_RS04800 -2.5 -6.4 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS09375 -2.5 -2.0 hypothetical protein compare
MMJJ_RS07170 -2.5 -5.3 pyridoxal phosphate-dependent aminotransferase compare
MMJJ_RS04655 -2.5 -6.8 FAD-dependent oxidoreductase compare
MMJJ_RS08095 -2.4 -5.2 cobyric acid synthase CobQ compare
MMJJ_RS03660 -2.4 -4.9 DUF447 family protein compare
MMJJ_RS03150 -2.4 -8.0 2-phospho-L-lactate transferase compare
MMJJ_RS00045 -2.4 -14.0 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS03295 -2.4 -14.3 PHP domain-containing protein compare
MMJJ_RS00040 -2.4 -8.7 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS01690 -2.4 -4.6 methanogenesis marker 12 protein compare
MMJJ_RS04155 -2.4 -6.4 hypothetical protein compare
MMJJ_RS00195 -2.3 -4.1 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS00060 -2.3 -16.0 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS07705 -2.3 -4.9 GTP-binding protein EngB compare
MMJJ_RS04995 -2.3 -7.9 Tfx family DNA-binding protein compare
MMJJ_RS00075 -2.3 -12.1 AAA family ATPase compare
MMJJ_RS08660 -2.3 -4.2 acetylornithine transaminase compare
MMJJ_RS00560 -2.3 -5.3 homoisocitrate dehydrogenase compare
MMJJ_RS03225 -2.3 -2.9 4Fe-4S binding protein compare
MMJJ_RS06730 -2.3 -7.4 ATP-binding cassette domain-containing protein compare
MMJJ_RS01345 -2.2 -3.7 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS00530 -2.2 -13.7 cobalt ECF transporter T component CbiQ compare
MMJJ_RS00055 -2.2 -9.9 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS07650 -2.2 -15.6 formate/nitrite transporter family protein compare
MMJJ_RS00065 -2.2 -12.1 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS05490 -2.2 -3.7 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS00035 -2.2 -14.9 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS02200 -2.2 -10.2 chorismate pyruvate-lyase family protein compare
MMJJ_RS03920 -2.2 -12.4 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS03830 -2.2 -12.4 CBS domain-containing protein compare
MMJJ_RS08870 -2.2 -1.8 2-isopropylmalate synthase compare
MMJJ_RS02920 -2.2 -3.1 30S ribosomal protein S27ae compare
MMJJ_RS00935 -2.2 -12.6 nickel pincer cofactor biosynthesis protein LarB compare
MMJJ_RS06240 -2.2 -3.3 dihydropteroate synthase-like protein compare
MMJJ_RS05930 -2.2 -3.4 cell division protein SepF compare
MMJJ_RS05655 -2.1 -7.7 HisA/HisF family protein compare
MMJJ_RS08000 -2.1 -10.1 HesA/MoeB/ThiF family protein compare
MMJJ_RS04675 -2.1 -5.8 thiamine pyrophosphate-binding protein compare
MMJJ_RS07345 -2.1 -7.4 homocysteine biosynthesis protein compare
MMJJ_RS00080 -2.1 -11.9 DUF166 domain-containing protein compare
MMJJ_RS04875 -2.1 -2.3 tRNA-Lys compare
MMJJ_RS00515 -2.1 -11.4 cobalt transporter CbiM compare
MMJJ_RS05595 -2.1 -4.2 hypothetical protein compare
MMJJ_RS03630 -2.1 -10.8 AMP phosphorylase compare
MMJJ_RS05810 -2.1 -6.1 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS05445 -2.1 -2.8 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS05995 -2.1 -2.3 ATP-binding cassette domain-containing protein compare
MMJJ_RS02040 -2.0 -1.9 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS06185 -2.0 -5.1 cobalamin biosynthesis protein compare
MMJJ_RS00600 -2.0 -3.5 hydroxymethylbilane synthase compare
MMJJ_RS05720 -2.0 -3.4 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS00570 -2.0 -2.4 ribonuclease P compare
MMJJ_RS07410 -2.0 -3.5 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS07995 -2.0 -8.4 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS08480 -2.0 -10.2 hydroxyethylthiazole kinase compare
MMJJ_RS00215 -2.0 -2.0 CCA tRNA nucleotidyltransferase compare
MMJJ_RS04010 -2.0 -7.9 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS01360 -2.0 -2.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS04050 -2.0 -2.2 dihydroneopterin aldolase family protein compare
MMJJ_RS07155 -2.0 -7.6 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS00210 -2.0 -3.0 DUF530 family protein compare
MMJJ_RS00345 -1.9 -10.2 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS00265 -1.9 -6.4 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS07725 -1.9 -5.3 DNA primase DnaG compare
MMJJ_RS01810 -1.9 -2.1 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS06700 -1.9 -4.6 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS04110 -1.9 -4.6 hypothetical protein compare
MMJJ_RS07980 -1.9 -10.4 biotin synthase BioB compare
MMJJ_RS02045 -1.9 -3.1 molybdenum cofactor guanylyltransferase compare
MMJJ_RS02275 -1.9 -4.9 nucleotidyltransferase domain-containing protein compare
MMJJ_RS00205 -1.9 -6.1 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS03815 -1.9 -2.4 nascent polypeptide-associated complex protein compare
MMJJ_RS04670 -1.9 -5.5 DUF2117 domain-containing protein compare
MMJJ_RS03115 -1.8 -6.1 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS05360 -1.8 -5.6 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS07720 -1.8 -2.0 UPF0058 family protein compare
MMJJ_RS07975 -1.8 -9.5 ATP-dependent sacrificial sulfur transferase LarE compare
MMJJ_RS05155 -1.8 -5.2 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS00580 -1.8 -2.2 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS06705 -1.8 -4.6 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS05065 -1.8 -4.8 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS08840 -1.8 -5.1 calcium/sodium antiporter compare
MMJJ_RS08585 -1.8 -7.2 M42 family metallopeptidase compare
MMJJ_RS07355 -1.8 -5.5 MoaD/ThiS family protein compare
MMJJ_RS01830 -1.8 -2.6 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS06155 -1.7 -4.7 phosphatidylglycerophosphatase A compare
MMJJ_RS05375 -1.7 -12.1 radical SAM protein compare
MMJJ_RS03060 -1.7 -2.9 methanogenesis marker 7 protein compare
MMJJ_RS06375 -1.7 -5.4 UbiX family flavin prenyltransferase compare
MMJJ_RS05295 -1.7 -8.5 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS06000 -1.7 -5.8 cation:proton antiporter subunit C compare
MMJJ_RS06175 -1.7 -2.3 DUF1743 domain-containing protein compare
MMJJ_RS06050 -1.7 -10.2 molybdopterin molybdotransferase MoeA compare
MMJJ_RS07275 -1.6 -3.4 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS05540 -1.6 -12.3 LysR family transcriptional regulator compare
MMJJ_RS01475 -1.6 -2.6 signal recognition particle-docking protein FtsY compare
MMJJ_RS00645 -1.6 -9.4 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS03125 -1.6 -3.7 GMC oxidoreductase compare
MMJJ_RS04565 -1.6 -3.2 sirohydrochlorin nickelochelatase compare
MMJJ_RS06760 -1.6 -4.0 Ni-sirohydrochlorin a,c-diamide synthase compare
MMJJ_RS08155 -1.6 -3.2 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS07370 -1.6 -3.6 tRNA 4-thiouridine(8) synthase ThiI compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms