Experiment set3IT085 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -5.2 -6.6 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_4352 -4.5 -5.3 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4416 -3.0 -3.7 Tyrosine recombinase XerC compare
Pf6N2E2_3461 -2.5 -2.9 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_178 -2.4 -2.2 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_4162 -2.1 -2.9 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_3460 -2.0 -2.7 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5242 -1.9 -2.6 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf6N2E2_4181 -1.9 -2.1 Organic hydroperoxide resistance protein compare
Pf6N2E2_2181 -1.6 -2.8 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_5527 -1.6 -2.6 Cold shock protein CspC compare
Pf6N2E2_5155 -1.5 -3.4 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_5006 -1.5 -8.6 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_4153 -1.4 -2.4 Sensory box histidine kinase compare
Pf6N2E2_2753 -1.3 -3.2 HtrA protease/chaperone protein compare
Pf6N2E2_156 -1.3 -2.9 Carbon storage regulator compare
Pf6N2E2_3908 -1.2 -5.5 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_5001 -1.2 -2.6 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_5428 -1.2 -5.5 DNA recombination and repair protein RecO compare
Pf6N2E2_5316 -1.2 -2.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_2318 -1.1 -6.5 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_2992 -1.1 -4.0 Regulatory protein RecX compare
Pf6N2E2_4197 -1.1 -6.2 DNA recombination and repair protein RecF compare
Pf6N2E2_5014 -1.1 -1.3 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4353 -1.1 -3.5 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2325 -1.1 -4.3 Recombination protein RecR compare
Pf6N2E2_3351 -1.1 -3.4 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_2277 -1.1 -2.2 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_5536 -1.1 -1.6 Holliday junction DNA helicase RuvA compare
Pf6N2E2_2552 -1.0 -5.0 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_2940 -1.0 -5.3 OmpA family protein compare
Pf6N2E2_3027 -1.0 -1.9 Baseplate assembly protein V compare
Pf6N2E2_5555 -1.0 -1.6 Cold shock protein CspA compare
Pf6N2E2_3454 -1.0 -2.5 hypothetical protein compare
Pf6N2E2_3782 -1.0 -3.7 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_5338 -1.0 -5.9 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_5705 -1.0 -2.3 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf6N2E2_4159 -1.0 -3.5 Cytochrome c4 compare
Pf6N2E2_4454 -1.0 -4.2 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_2320 -1.0 -1.6 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_4678 -0.9 -1.1 hypothetical protein compare
Pf6N2E2_1797 -0.9 -2.2 Transcriptional regulator compare
Pf6N2E2_5677 -0.9 -1.7 Carbon storage regulator compare
Pf6N2E2_4362 -0.9 -2.4 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_2217 -0.9 -4.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_3192 -0.9 -3.7 tRNA:Cm32/Um32 methyltransferase compare
Pf6N2E2_4273 -0.9 -4.2 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_2527 -0.9 -3.6 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_3656 -0.9 -4.1 Probable transcription regulator Mig-14 compare
Pf6N2E2_5339 -0.9 -4.0 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2646 -0.9 -1.2 FIG00953416: hypothetical protein compare
Pf6N2E2_469 -0.9 -2.0 lipoprotein, putative compare
Pf6N2E2_3876 -0.9 -3.1 Agmatine deiminase (EC 3.5.3.12) compare
Pf6N2E2_1323 -0.8 -2.3 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_4204 -0.8 -1.0 rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB compare
Pf6N2E2_4545 -0.8 -1.7 hypothetical protein compare
Pf6N2E2_2912 -0.8 -1.9 FIG00954094: hypothetical protein compare
Pf6N2E2_2317 -0.8 -3.3 Putative analog of CcoH, COG3198 compare
Pf6N2E2_5237 -0.8 -2.2 Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8) compare
Pf6N2E2_4025 -0.8 -1.6 hypothetical protein compare
Pf6N2E2_3786 -0.8 -2.6 Twin-arginine translocation protein TatC compare
Pf6N2E2_1778 -0.8 -2.2 Positive regulator of CheA protein activity (CheW) compare
Pf6N2E2_4205 -0.8 -2.3 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_290 -0.8 -1.9 Cold shock protein CspD compare
Pf6N2E2_3696 -0.8 -1.0 hypothetical protein compare
Pf6N2E2_2126 -0.7 -3.6 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_2127 -0.7 -2.6 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_754 -0.7 -1.9 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_5967 -0.7 -3.0 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf6N2E2_2139 -0.7 -2.6 Paraquat-inducible protein A compare
Pf6N2E2_2397 -0.7 -2.1 Two-component system response regulator QseB compare
Pf6N2E2_3737 -0.7 -2.0 General secretion pathway protein M compare
Pf6N2E2_2549 -0.7 -1.2 hypothetical protein compare
Pf6N2E2_367 -0.7 -2.2 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_2310 -0.7 -4.6 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_4886 -0.7 -5.3 Catalase (EC 1.11.1.6) compare
Pf6N2E2_3261 -0.7 -3.0 hypothetical protein compare
Pf6N2E2_5499 -0.7 -1.0 hypothetical protein compare
Pf6N2E2_3665 -0.7 -0.8 serine/threonine protein kinase compare
Pf6N2E2_5430 -0.7 -3.7 Transglycosylase, Slt family compare
Pf6N2E2_601 -0.7 -2.4 GlpG protein (membrane protein of glp regulon) compare
Pf6N2E2_698 -0.7 -1.2 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_2586 -0.7 -1.4 Hpt domain protein compare
Pf6N2E2_2286 -0.7 -2.2 FIG00953287: hypothetical protein compare
Pf6N2E2_1399 -0.7 -2.1 Transcriptional regulator, LuxR family compare
Pf6N2E2_1705 -0.7 -1.4 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_4187 -0.7 -2.6 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_1545 -0.6 -2.1 N-carbamoylputrescine amidase (EC 3.5.1.53) compare
Pf6N2E2_342 -0.6 -1.0 DNA-binding response regulator compare
Pf6N2E2_4591 -0.6 -2.7 tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) compare
Pf6N2E2_3255 -0.6 -2.7 YrbA protein compare
Pf6N2E2_5632 -0.6 -2.5 Aromatic amino acid transport protein AroP compare
Pf6N2E2_4397 -0.6 -2.7 Xanthine phosphoribosyltransferase (EC 2.4.2.22) compare
Pf6N2E2_2311 -0.6 -4.3 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf6N2E2_2200 -0.6 -1.2 RNA polymerase sigma-54 factor RpoN compare
Pf6N2E2_1506 -0.6 -1.9 Putative alkanesulfonate metabolism utilization regulator compare
Pf6N2E2_2313 -0.6 -2.2 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf6N2E2_3534 -0.6 -1.9 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_75 -0.6 -1.1 Colicin V production protein compare
Pf6N2E2_2428 -0.6 -2.4 Thiol-disulfide isomerase and thioredoxins compare
Pf6N2E2_4797 -0.6 -0.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) compare
Pf6N2E2_5156 -0.6 -1.3 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_795 -0.6 -2.7 ABC transporter ATP-binding protein uup compare
Pf6N2E2_5728 -0.6 -2.3 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf6N2E2_43 -0.6 -2.9 Histidine permease YuiF compare
Pf6N2E2_5261 -0.6 -1.0 FIG00956983: hypothetical protein compare
Pf6N2E2_4474 -0.6 -4.3 FIG006231: RNA-binding protein compare
Pf6N2E2_3132 -0.6 -1.8 FIG00954548: hypothetical protein compare
Pf6N2E2_5241 -0.6 -1.3 Aminopeptidase N compare
Pf6N2E2_5506 -0.6 -3.8 Exodeoxyribonuclease I (EC 3.1.11.1) compare
Pf6N2E2_4615 -0.6 -1.3 type IV pili signal transduction protein PilI compare
Pf6N2E2_5906 -0.6 -1.9 Flp pilus assembly protein, pilin Flp compare
Pf6N2E2_4710 -0.6 -1.0 hypothetical protein compare
Pf6N2E2_2261 -0.6 -3.1 VacJ-like lipoprotein precursor compare
Pf6N2E2_2128 -0.6 -3.2 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_1136 -0.6 -1.3 Transcriptional regulator, TetR family compare
Pf6N2E2_1860 -0.6 -1.6 Ferredoxin, 2Fe-2S compare
Pf6N2E2_5020 -0.6 -2.4 FIG00955339: hypothetical protein compare
Pf6N2E2_4216 -0.6 -1.3 Transcriptional regulator of glmS gene, DeoR family compare
Pf6N2E2_5841 -0.6 -0.9 GlcG protein compare
Pf6N2E2_5943 -0.6 -1.7 hypothetical protein compare
Pf6N2E2_3198 -0.6 -1.2 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_1131 -0.6 -2.3 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf6N2E2_5725 -0.6 -3.0 nucleoprotein/polynucleotide-associated enzyme compare
Pf6N2E2_58 -0.6 -1.0 tRNA-dihydrouridine synthase C (EC 1.-.-.-) compare
Pf6N2E2_3206 -0.5 -1.1 hypothetical protein compare
Pf6N2E2_374 -0.5 -1.9 FIG00953249: hypothetical protein compare
Pf6N2E2_5862 -0.5 -1.4 Lipoprotein, putative compare
Pf6N2E2_5633 -0.5 -4.6 Aromatic amino acid transport protein AroP compare
Pf6N2E2_1463 -0.5 -1.7 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_2309 -0.5 -2.0 hypothetical protein compare
Pf6N2E2_922 -0.5 -1.2 FIG00794167: hypothetical protein compare
Pf6N2E2_2219 -0.5 -1.3 Cell division trigger factor (EC 5.2.1.8) compare
Pf6N2E2_3370 -0.5 -4.0 DNA repair protein RecN compare
Pf6N2E2_5594 -0.5 -3.1 Endonuclease III (EC 4.2.99.18) compare
Pf6N2E2_2465 -0.5 -2.7 Cys regulon transcriptional activator CysB compare
Pf6N2E2_1072 -0.5 -3.0 LmbE-like protein compare
Pf6N2E2_319 -0.5 -1.6 DUF1850 domain-containing protein compare
Pf6N2E2_3655 -0.5 -3.9 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_2605 -0.5 -3.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_3039 -0.5 -3.4 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_33 -0.5 -0.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_4372 -0.5 -2.0 FIG00460773: hypothetical protein compare
Pf6N2E2_2189 -0.5 -2.4 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Pf6N2E2_3264 -0.5 -1.6 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_3516 -0.5 -1.2 Probable transmembrane protein compare
Pf6N2E2_1124 -0.5 -1.7 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_500 -0.5 -1.5 Beta-ureidopropionase (EC 3.5.1.6) compare
Pf6N2E2_630 -0.5 -1.7 Epimerase KguE compare
Pf6N2E2_1141 -0.5 -1.3 Lipid-A-disaccharide synthase (EC 2.4.1.182) compare
Pf6N2E2_5554 -0.5 -2.3 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_2063 -0.5 -2.0 Predicted cobalt transporter CbtA compare
Pf6N2E2_4659 -0.5 -2.6 Lipoprotein, putative compare
Pf6N2E2_603 -0.5 -2.3 FIG00953934: hypothetical protein compare
Pf6N2E2_2503 -0.5 -1.4 Glycosyl transferase, group 1 family protein compare
Pf6N2E2_423 -0.5 -1.2 Putative phosphatase YfbT compare
Pf6N2E2_478 -0.5 -1.4 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) compare
Pf6N2E2_5749 -0.5 -2.0 hypothetical protein compare
Pf6N2E2_2073 -0.5 -2.8 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf6N2E2_3666 -0.5 -2.2 InaA protein compare
Pf6N2E2_1683 -0.5 -1.0 Fe2+-dicitrate sensor, membrane component compare
Pf6N2E2_2300 -0.5 -1.9 LSU rRNA 2'-O-methyl-C2498 methyltransferase RlmM compare
Pf6N2E2_4059 -0.5 -0.7 DNA-binding protein HU-alpha compare
Pf6N2E2_3060 -0.5 -1.3 Outer membrane protein H precursor compare
Pf6N2E2_2656 -0.5 -2.3 Undecaprenyl pyrophosphate synthase compare
Pf6N2E2_5704 -0.5 -2.3 Transcriptional regulatory protein PhoP compare
Pf6N2E2_3897 -0.5 -2.2 hypothetical protein compare
Pf6N2E2_3120 -0.5 -2.1 Chemotaxis signal transduction protein compare
Pf6N2E2_2074 -0.5 -1.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
Pf6N2E2_1667 -0.5 -1.6 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_2057 -0.5 -3.4 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipi n synthases and related enzymes compare
Pf6N2E2_122 -0.5 -0.9 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_5158 -0.5 -2.2 FIG00954153: hypothetical protein compare
Pf6N2E2_447 -0.5 -2.4 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_1633 -0.5 -2.3 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf6N2E2_2316 -0.5 -3.2 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf6N2E2_1433 -0.5 -1.9 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_348 -0.5 -2.8 Transcriptional regulator, LysR family compare
Pf6N2E2_3313 -0.5 -1.9 Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) compare
Pf6N2E2_5508 -0.5 -1.0 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_1844 -0.4 -2.2 MaoC-related acyl dehydratase compare
Pf6N2E2_1049 -0.4 -2.0 hypothetical protein compare
Pf6N2E2_1148 -0.4 -1.7 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf6N2E2_5843 -0.4 -1.5 hypothetical protein compare
Pf6N2E2_2606 -0.4 -2.5 hypothetical protein compare
Pf6N2E2_5272 -0.4 -1.9 Dihydroneopterin triphosphate epimerase compare
Pf6N2E2_1441 -0.4 -0.8 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_5435 -0.4 -2.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_160 -0.4 -1.6 hypothetical protein compare
Pf6N2E2_5756 -0.4 -0.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf6N2E2_288 -0.4 -0.7 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf6N2E2_5381 -0.4 -2.6 Alginate lyase precursor (EC 4.2.2.3) compare
Pf6N2E2_2252 -0.4 -2.1 NreA-like protein compare
Pf6N2E2_361 -0.4 -1.7 Peptide ABC transporter, permease protein compare
Pf6N2E2_3305 -0.4 -1.7 hypothetical protein compare
Pf6N2E2_5300 -0.4 -3.4 Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) compare
Pf6N2E2_5876 -0.4 -2.1 Lipase (EC 3.1.1.3) compare
Pf6N2E2_1905 -0.4 -2.3 Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16) compare
Pf6N2E2_4630 -0.4 -2.2 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf6N2E2_1298 -0.4 -2.4 Xanthine transporter,putative compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments