Experiment set3IT085 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Rifampicin 0.005 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_01220 -5.0 -3.5 hypothetical protein compare
AO353_17855 -3.9 -2.7 ribonuclease D compare
AO353_18630 -3.5 -10.1 beta-ketoacyl-ACP synthase compare
AO353_22685 -3.5 -3.4 peroxidase compare
AO353_21425 -3.5 -4.7 hypothetical protein compare
AO353_21455 -3.3 -3.1 cation:proton antiporter compare
AO353_06415 -3.1 -5.2 hypothetical protein compare
AO353_17645 -3.0 -11.1 peptidase M48 compare
AO353_00495 -3.0 -2.9 DNA topoisomerase I compare
AO353_03715 -3.0 -2.9 H-NS histone compare
AO353_08350 -2.9 -8.4 hypothetical protein compare
AO353_17675 -2.9 -5.8 hypothetical protein compare
AO353_04490 -2.8 -9.4 murein transglycosylase compare
AO353_13040 -2.8 -8.2 esterase conserved
AO353_14775 -2.8 -6.8 hypothetical protein compare
AO353_09890 -2.7 -4.2 phosphate ABC transporter ATP-binding protein compare
AO353_09950 -2.7 -5.8 aspartate ammonia-lyase compare
AO353_19250 -2.7 -2.6 molybdenum cofactor guanylyltransferase compare
AO353_09905 -2.7 -9.5 phosphate-binding protein compare
AO353_15900 -2.7 -3.1 GTP-binding protein compare
AO353_08885 -2.7 -16.1 polyphosphate kinase compare
AO353_23710 -2.6 -6.1 protein BatD compare
AO353_12105 -2.6 -6.6 peptidase S41 compare
AO353_15905 -2.5 -6.5 outer membrane protein assembly factor BamB compare
AO353_09240 -2.5 -3.4 acetylglutamate kinase compare
AO353_03615 -2.5 -3.7 cold-shock protein compare
AO353_26945 -2.4 -2.8 transcriptional regulator compare
AO353_10995 -2.4 -10.4 hypothetical protein compare
AO353_27550 -2.4 -2.3 hypothetical protein compare
AO353_23735 -2.4 -8.1 AAA family ATPase compare
AO353_00825 -2.4 -3.9 porin compare
AO353_03545 -2.3 -8.5 hypothetical protein compare
AO353_06585 -2.3 -6.9 hypothetical protein compare
AO353_02940 -2.2 -3.0 DNA-binding protein compare
AO353_09900 -2.2 -11.1 phosphate ABC transporter permease compare
AO353_18500 -2.2 -2.4 chemotaxis protein CheY compare
AO353_12115 -2.2 -2.6 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_16495 -2.2 -5.9 zinc metallopeptidase RseP compare
AO353_06775 -2.2 -6.9 dTDP-4-dehydrorhamnose reductase compare
AO353_21430 -2.2 -3.2 hypothetical protein compare
AO353_27090 -2.1 -2.8 hypothetical protein compare
AO353_04565 -2.1 -6.1 nucleoid-associated protein compare
AO353_09315 -2.1 -9.7 LysR family transcriptional regulator compare
AO353_10950 -2.1 -9.5 thiol:disulfide interchange protein compare
AO353_00310 -2.1 -9.1 transaldolase compare
AO353_05550 -2.1 -6.9 pseudouridine synthase compare
AO353_11340 -2.0 -1.9 MarR family transcriptional regulator compare
AO353_06865 -2.0 -13.1 catalase compare
AO353_23715 -2.0 -5.3 hypothetical protein compare
AO353_09045 -2.0 -1.7 hypothetical protein compare
AO353_15260 -2.0 -5.8 stringent starvation protein A compare
AO353_09345 -1.9 -2.5 hypothetical protein compare
AO353_20785 -1.9 -5.4 carbon storage regulator CsrA compare
AO353_13415 -1.9 -5.6 TetR family transcriptional regulator compare
AO353_18170 -1.9 -7.6 aspartyl beta-hydroxylase compare
AO353_17640 -1.9 -2.4 serine peptidase compare
AO353_21400 -1.9 -2.8 conjugal transfer protein TraR compare
AO353_02250 -1.9 -4.0 chorismate synthase compare
AO353_09275 -1.9 -3.3 DNA-directed RNA polymerase subunit omega compare
AO353_08245 -1.9 -3.6 cell division ATP-binding protein FtsE compare
AO353_14990 -1.9 -2.1 hypothetical protein compare
AO353_11750 -1.8 -2.7 ATPase compare
AO353_10895 -1.8 -5.0 hypothetical protein conserved
AO353_04355 -1.8 -2.1 homoserine dehydrogenase compare
AO353_03420 -1.8 -5.0 phosphogluconate dehydratase compare
AO353_23725 -1.8 -5.1 hypothetical protein compare
AO353_02440 -1.8 -10.3 peptidase S41 compare
AO353_01685 -1.8 -2.3 hypothetical protein compare
AO353_19015 -1.7 -10.2 hypothetical protein compare
AO353_03580 -1.7 -3.8 ATP-dependent DNA helicase RuvB compare
AO353_16915 -1.7 -8.8 hypothetical protein compare
AO353_06455 -1.7 -2.8 D-alanyl-D-alanine carboxypeptidase compare
AO353_10930 -1.7 -7.2 DNA polymerase I compare
AO353_20200 -1.7 -4.1 peptidylprolyl isomerase compare
AO353_22810 -1.7 -1.6 hypothetical protein compare
AO353_11485 -1.7 -4.4 hypothetical protein compare
AO353_17035 -1.7 -4.9 hypothetical protein compare
AO353_18780 -1.7 -6.3 cobyrinic acid a,c-diamide synthase compare
AO353_23730 -1.6 -2.8 hypothetical protein compare
AO353_25550 -1.6 -5.1 4-amino-4-deoxy-L-arabinose transferase compare
AO353_05225 -1.6 -11.3 hypothetical protein compare
AO353_12110 -1.6 -5.5 peptidase M23 compare
AO353_17155 -1.6 -10.2 RNA polymerase-associated protein RapA conserved
AO353_06320 -1.6 -4.1 AsnC family transcriptional regulator compare
AO353_00260 -1.6 -2.6 hypothetical protein compare
AO353_06040 -1.6 -3.2 exodeoxyribonuclease V subunit alpha compare
AO353_26055 -1.6 -2.7 hypothetical protein compare
AO353_07195 -1.5 -4.1 peroxiredoxin compare
AO353_00515 -1.5 -3.3 hypothetical protein compare
AO353_13925 -1.5 -2.3 XRE family transcriptional regulator compare
AO353_18555 -1.5 -9.3 aromatic amino acid transporter compare
AO353_12510 -1.5 -8.6 cell division protein compare
AO353_08115 -1.5 -5.3 energy transducer TonB compare
AO353_20170 -1.5 -4.6 trigger factor compare
AO353_01215 -1.5 -7.9 hypothetical protein compare
AO353_15285 -1.5 -8.1 hypothetical protein compare
AO353_07155 -1.5 -5.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_16825 -1.4 -4.6 hypothetical protein compare
AO353_11695 -1.4 -2.9 hypothetical protein compare
AO353_25990 -1.4 -5.0 aspartyl beta-hydroxylase compare
AO353_03710 -1.4 -2.4 formyltetrahydrofolate deformylase compare
AO353_23720 -1.4 -3.4 BatB protein compare
AO353_09060 -1.4 -2.7 hypothetical protein compare
AO353_16605 -1.4 -9.0 protein-L-isoaspartate O-methyltransferase compare
AO353_03640 -1.4 -4.3 nucleotide-binding protein compare
AO353_12470 -1.4 -9.6 peptidase compare
AO353_23245 -1.4 -2.2 DNA-3-methyladenine glycosylase compare
AO353_13200 -1.4 -8.1 exoribonuclease R compare
AO353_13390 -1.4 -7.2 N-acylglucosamine 2-epimerase compare
AO353_09250 -1.3 -2.6 exodeoxyribonuclease III compare
AO353_10915 -1.3 -7.5 ABC transporter substrate-binding protein compare
AO353_26070 -1.3 -2.0 hypothetical protein compare
AO353_20370 -1.3 -2.9 MerR family transcriptional regulator compare
AO353_26220 -1.3 -2.9 hypothetical protein compare
AO353_06530 -1.3 -8.7 peptidase C13 conserved
AO353_10510 -1.3 -1.9 benzoate transporter compare
AO353_01190 -1.3 -1.5 hypothetical protein compare
AO353_01205 -1.3 -5.3 translation initiation factor 2 compare
AO353_04360 -1.2 -5.8 protein-disulfide isomerase compare
AO353_12710 -1.2 -1.4 thioredoxin compare
AO353_13720 -1.2 -7.9 arginine decarboxylase compare
AO353_01725 -1.2 -2.4 phosphohistidine phosphatase compare
AO353_22890 -1.2 -3.3 secretion protein HlyD compare
AO353_15410 -1.2 -1.8 hypothetical protein compare
AO353_00845 -1.2 -5.3 CmaX protein compare
AO353_10900 -1.2 -6.2 hypothetical protein compare
AO353_10320 -1.2 -1.8 hypothetical protein compare
AO353_09040 -1.2 -1.2 diaminopimelate epimerase compare
AO353_03585 -1.2 -1.4 ATP-dependent DNA helicase RuvA compare
AO353_03100 -1.2 -1.4 XRE family transcriptional regulator compare
AO353_13225 -1.2 -2.0 50S ribosomal protein L9 compare
AO353_09915 -1.2 -4.1 long-chain acyl-CoA thioester hydrolase compare
AO353_03005 -1.2 -3.8 succinylarginine dihydrolase compare
AO353_03590 -1.2 -2.9 crossover junction endodeoxyribonuclease RuvC compare
AO353_03360 -1.2 -5.1 glucose-6-phosphate dehydrogenase compare
AO353_15500 -1.2 -7.0 L-serine ammonia-lyase (EC 4.3.1.17) (from data) compare
AO353_16350 -1.2 -3.1 SAM-dependent methyltransferase compare
AO353_03670 -1.1 -3.4 ornithine acetyltransferase compare
AO353_07355 -1.1 -4.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_20840 -1.1 -1.7 ribose pyranase compare
AO353_27460 -1.1 -2.3 hypothetical protein compare
AO353_09260 -1.1 -4.7 ribonuclease PH compare
AO353_17365 -1.1 -2.7 hypothetical protein compare
AO353_06045 -1.1 -4.8 exodeoxyribonuclease V subunit beta compare
AO353_17175 -1.1 -2.1 beta-ketoadipyl CoA thiolase compare
AO353_04445 -1.1 -2.6 GntR family transcriptional regulator compare
AO353_02810 -1.1 -5.0 histidine kinase compare
AO353_05625 -1.1 -1.4 transcription elongation factor GreA compare
AO353_09560 -1.1 -1.4 type VI secretion protein compare
AO353_07460 -1.1 -2.3 DNA-binding protein compare
AO353_10070 -1.1 -5.9 cell wall assembly protein compare
AO353_18130 -1.1 -1.5 hypothetical protein compare
AO353_07515 -1.0 -1.7 transporter compare
AO353_02190 -1.0 -6.3 hypothetical protein compare
AO353_06050 -1.0 -4.3 exodeoxyribonuclease V subunit gamma compare
AO353_13640 -1.0 -3.2 histidine kinase compare
AO353_09860 -1.0 -5.9 histidine kinase compare
AO353_10430 -1.0 -2.5 chromosome partitioning protein ParB compare
AO353_22785 -1.0 -3.5 peptidase compare
AO353_07445 -1.0 -1.1 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_16805 -1.0 -3.5 recombinase RecA compare
AO353_23860 -1.0 -2.4 xanthine permease XanP compare
AO353_24745 -1.0 -1.5 hypothetical protein compare
AO353_19070 -1.0 -2.3 hypothetical protein compare
AO353_15290 -1.0 -4.9 methyltransferase compare
AO353_18120 -1.0 -1.8 hypothetical protein compare
AO353_16710 -1.0 -1.7 hypothetical protein compare
AO353_17955 -1.0 -4.6 MFS transporter compare
AO353_19020 -1.0 -1.3 hypothetical protein compare
AO353_19030 -1.0 -4.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
AO353_11225 -1.0 -3.6 disulfide bond formation protein DsbA compare
AO353_05130 -1.0 -1.1 anti-anti-sigma factor compare
AO353_06540 -1.0 -1.4 hypothetical protein compare
AO353_28815 -1.0 -1.8 hypothetical protein compare
AO353_15545 -0.9 -3.1 IclR family transcriptional regulator compare
AO353_09000 -0.9 -2.9 argininosuccinate lyase compare
AO353_09895 -0.9 -4.0 phosphate ABC transporter permease compare
AO353_05420 -0.9 -1.4 peptide chain release factor 3 compare
AO353_02970 -0.9 -1.6 carbon storage regulator compare
AO353_16745 -0.9 -1.6 ArsR family transcriptional regulator compare
AO353_22700 -0.9 -1.9 LexA family transcriptional regulator compare
AO353_17190 -0.9 -4.5 4-hydroxybenzoate transporter compare
AO353_05800 -0.9 -2.9 hypothetical protein compare
AO353_26115 -0.9 -1.4 hypothetical protein compare
AO353_13085 -0.9 -2.9 histidine kinase compare
AO353_02330 -0.9 -2.1 allantoicase compare
AO353_18560 -0.9 -1.4 class I peptide chain release factor compare
AO353_21750 -0.9 -1.6 peptidylprolyl isomerase compare
AO353_26195 -0.9 -2.0 hypothetical protein compare
AO353_03695 -0.9 -4.1 deacetylase compare
AO353_08020 -0.9 -4.2 hypothetical protein compare
AO353_00865 -0.9 -4.5 phosphoenolpyruvate synthase compare
AO353_20780 -0.9 -3.5 hypothetical protein compare
AO353_26835 -0.9 -2.0 transcriptional regulator compare
AO353_00660 -0.9 -1.9 transcriptional regulator compare
AO353_29215 -0.9 -1.5 alpha/beta hydrolase compare
AO353_02235 -0.9 -3.4 acireductone dioxygenase compare
AO353_23155 -0.8 -2.6 IclR family transcriptional regulator compare
AO353_15375 -0.8 -5.4 deoxyribonuclease compare
AO353_26550 -0.8 -1.1 hypothetical protein compare


Specific Phenotypes

For 17 genes in this experiment

For stress Rifampicin in Pseudomonas fluorescens FW300-N2E3

For stress Rifampicin across organisms