Experiment set3IT085 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Rifampicin 0.005 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
AO353_12940 +5.1 29.4 glycosyl transferase compare
AO353_12950 +3.9 23.8 polymerase compare
AO353_02000 +3.9 15.7 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_01980 +3.9 29.0 NAD-dependent dehydratase compare
AO353_07145 +3.5 27.6 anhydro-N-acetylmuramic acid kinase compare
AO353_12935 +3.5 8.7 glycosyltransferase compare
AO353_02005 +3.5 3.2 hypothetical protein compare
AO353_12420 +3.4 14.5 predicted FeS cluster maintenance protein (from data) compare
AO353_07295 +3.4 29.4 aminoglycoside phosphotransferase compare
AO353_01355 +3.3 21.2 3-oxoacyl-ACP synthase compare
AO353_16925 +3.3 29.3 AmpG family muropeptide MFS transporter compare
AO353_00455 +3.2 9.1 beta-hexosaminidase compare
AO353_09235 +3.2 20.7 phosphoglucomutase compare
AO353_01975 +3.2 17.7 glycosyl transferase compare
AO353_10270 +3.2 15.3 glycosyl transferase compare
AO353_02100 +3.1 18.7 phosphoglycolate phosphatase compare
AO353_13140 +3.1 12.8 tRNA dimethylallyltransferase compare
AO353_19825 +3.1 21.2 shikimate dehydrogenase compare
AO353_02015 +3.0 17.5 acetyltransferase compare
AO353_15170 +3.0 7.2 cytochrome D ubiquinol oxidase subunit III compare
AO353_02010 +3.0 15.1 glycosyl transferase family 1 compare
AO353_07290 +2.9 19.3 mannose-1-phosphate guanylyltransferase compare
AO353_01405 +2.9 14.8 23S rRNA pseudouridylate synthase compare
AO353_01995 +2.9 23.0 hypothetical protein compare
AO353_14585 +2.8 15.0 ribosomal-protein-alanine acetyltransferase compare
AO353_01970 +2.7 20.1 hypothetical protein compare
AO353_05195 +2.7 19.2 glmZ(sRNA)-inactivating NTPase compare
AO353_01985 +2.7 17.7 hypothetical protein compare
AO353_01990 +2.7 15.3 UDP-N-acetylglucosamine 2-epimerase compare
AO353_02025 +2.6 18.7 mannose-1-phosphate guanyltransferase compare
AO353_08895 +2.6 8.3 hypothetical protein compare
AO353_11775 +2.6 15.6 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_02030 +2.5 3.6 hypothetical protein compare
AO353_07075 +2.5 13.0 elongation factor Tu compare
AO353_01780 +2.3 16.6 heat-shock protein Hsp90 compare
AO353_07140 +2.1 17.3 peptidase M23 compare
AO353_12930 +2.1 6.6 GlcNAc-PI de-N-acetylase compare
AO353_02735 +2.1 18.2 chemotaxis protein CheY compare
AO353_00435 +2.1 18.0 transcription-repair coupling factor compare
AO353_12500 +2.0 4.0 shikimate kinase compare
AO353_02040 +1.9 2.4 integration host factor subunit beta compare
AO353_20865 +1.9 5.4 cold-shock protein compare
AO353_21830 +1.8 14.9 chemotaxis protein CheY compare
AO353_11770 +1.8 3.9 molecular chaperone Hsp33 compare
AO353_00510 +1.8 9.8 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_13135 +1.7 8.2 DNA mismatch repair protein compare
AO353_06365 +1.7 13.3 hypothetical protein compare
AO353_18540 +1.7 5.8 pseudouridine synthase compare
AO353_05510 +1.6 9.0 N-acetyl-anhydromuranmyl-L-alanine amidase compare
AO353_23385 +1.6 7.3 trans-2-enoyl-CoA reductase compare
AO353_14840 +1.5 8.2 NAD-dependent dehydratase compare
AO353_02045 +1.5 6.9 hypothetical protein compare
AO353_00610 +1.5 3.8 cytochrome C oxidase Cbb3 compare
AO353_02765 +1.5 4.1 NAD(P)H-quinone oxidoreductase compare
AO353_15785 +1.5 10.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_12310 +1.4 11.1 glucan biosynthesis protein G compare
AO353_11525 +1.4 9.0 aminotransferase compare
AO353_12315 +1.4 11.0 glucosyltransferase MdoH compare
AO353_10265 +1.4 9.5 glycosyl transferase compare
AO353_05240 +1.4 3.0 rod shape-determining protein MreD compare
AO353_12060 +1.4 6.8 acetyltransferase compare
AO353_03520 +1.4 4.7 hypothetical protein compare
AO353_12915 +1.3 7.4 carbamoyltransferase compare
AO353_13160 +1.3 2.3 membrane protease HflC compare
AO353_20925 +1.3 2.2 hypothetical protein compare
AO353_10235 +1.3 9.3 glycosyltransferase compare
AO353_26830 +1.3 5.4 histidine kinase compare
AO353_14400 +1.2 6.1 Fis family transcriptional regulator compare
AO353_20185 +1.2 6.3 DNA-binding protein compare
AO353_21640 +1.2 3.3 cobalt transporter compare
AO353_26090 +1.2 3.1 hypothetical protein compare
AO353_08050 +1.2 5.4 16S rRNA methyltransferase compare
AO353_09835 +1.2 3.5 rubredoxin compare
AO353_02020 +1.2 4.3 hypothetical protein compare
AO353_22120 +1.1 2.1 cyclic pyranopterin phosphate synthase MoaA compare
AO353_08775 +1.1 1.7 cell division protein ZapA compare
AO353_10085 +1.1 2.6 pyridoxamine kinase compare
AO353_04520 +1.1 4.1 elongation factor 4 compare
AO353_24665 +1.1 7.4 phosphoglucomutase compare
AO353_02815 +1.1 4.9 transcriptional regulator compare
AO353_18690 +1.1 3.7 flagellar assembly protein FliH compare
AO353_10260 +1.1 7.3 sugar ABC transporter ATP-binding protein compare
AO353_03795 +1.0 4.5 fumarate hydratase compare
AO353_18685 +1.0 5.6 flagellar motor switch protein FliG compare
AO353_08875 +1.0 1.7 amino acid ABC transporter ATP-binding protein compare
AO353_06375 +1.0 7.3 (dimethylallyl)adenosine tRNA methylthiotransferase compare
AO353_04185 +1.0 5.3 DeoR family transcriptional regulator compare
AO353_13115 +1.0 7.1 epoxyqueuosine reductase compare
AO353_02065 +1.0 4.7 aspartate aminotransferase compare
AO353_12945 +1.0 2.6 toluene tolerance protein compare
AO353_08195 +1.0 3.5 non-canonical purine NTP pyrophosphatase compare
AO353_13155 +1.0 3.3 hypothetical protein compare
AO353_12720 +1.0 2.5 hypothetical protein compare
AO353_12130 +1.0 3.6 preprotein translocase subunit SecB compare
AO353_16425 +1.0 2.6 Fe-S metabolism protein SufE compare
AO353_04065 +1.0 3.4 electron transporter RnfB compare
AO353_12045 +1.0 3.8 iron transporter compare
AO353_04155 +0.9 6.8 ornithine carbamoyltransferase compare
AO353_05675 +0.9 5.3 protein RnfH compare
AO353_07095 +0.9 6.2 hypothetical protein compare
AO353_26415 +0.9 3.5 hypothetical protein compare
AO353_14940 +0.9 3.3 malate:quinone oxidoreductase compare
AO353_15885 +0.9 3.0 Cro/Cl family transcriptional regulator compare
AO353_25335 +0.9 1.5 malonate decarboxylase acyl carrier protein compare
AO353_00125 +0.9 2.1 hypothetical protein compare
AO353_19360 +0.9 2.4 peroxiredoxin compare
AO353_09840 +0.9 3.0 chorismate--pyruvate lyase compare
AO353_11920 +0.9 2.7 hypothetical protein compare
AO353_08130 +0.9 2.7 uracil phosphoribosyltransferase compare
AO353_06345 +0.9 8.3 histidine kinase compare
AO353_27530 +0.9 3.8 acetyl-CoA acetyltransferase compare
AO353_17305 +0.9 4.9 TetR family transcriptional regulator compare
AO353_16940 +0.9 3.8 deoxycytidine triphosphate deaminase compare
AO353_08110 +0.9 5.2 glutathione synthetase compare
AO353_04220 +0.9 4.9 chemotaxis protein CheY compare
AO353_20495 +0.9 2.5 NUDIX hydrolase compare
AO353_08535 +0.9 5.8 hypothetical protein compare
AO353_23495 +0.9 1.7 SAM-dependent methyltransferase compare
AO353_15210 +0.9 2.4 Zn-dependent hydrolase compare
AO353_02090 +0.9 5.3 N-ethylammeline chlorohydrolase compare
AO353_14370 +0.9 3.7 glucose-6-phosphate isomerase compare
AO353_19750 +0.8 2.0 diaminopimelate epimerase compare
AO353_06505 +0.8 6.2 phosphoesterase compare
AO353_17160 +0.8 1.2 aspartate-semialdehyde dehydrogenase compare
AO353_16415 +0.8 5.8 beta-(1-3)-glucosyl transferase compare
AO353_19310 +0.8 1.4 enoyl-CoA hydratase compare
AO353_02950 +0.8 4.7 cell envelope protein SmpA compare
AO353_18760 +0.8 4.5 flagellar biosynthetic protein FlhB compare
AO353_18435 +0.8 4.5 MarR family transcriptional regulator compare
AO353_18695 +0.8 5.0 flagellar protein export ATPase FliI compare
AO353_21780 +0.8 2.5 Fis family transcriptional regulator compare
AO353_23630 +0.8 5.2 aminopeptidase compare
AO353_10445 +0.8 1.5 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_02300 +0.8 2.0 MarR family transcriptional regulator compare
AO353_01965 +0.8 3.6 competence protein ComEA compare
AO353_18660 +0.8 4.5 AAA family ATPase compare
AO353_29340 +0.8 2.1 transporter compare
AO353_27720 +0.8 3.0 cupin compare
AO353_09135 +0.8 1.5 cytochrome C compare
AO353_08200 +0.8 5.3 coproporphyrinogen III oxidase compare
AO353_07105 +0.8 1.2 biotin--protein ligase compare
AO353_13840 +0.8 2.0 histidine kinase compare
AO353_17025 +0.8 6.2 beta-agarase compare
AO353_18600 +0.8 2.8 flagellar basal-body rod protein FlgG compare
AO353_03115 +0.8 2.6 TetR family transcriptional regulator compare
AO353_08760 +0.8 6.2 Xaa-Pro aminopeptidase compare
AO353_17650 +0.8 2.7 response regulator SirA compare
AO353_04180 +0.8 4.6 glycerol kinase compare
AO353_12135 +0.8 2.8 rRNA methylase compare
AO353_23405 +0.8 2.2 hypothetical protein compare
AO353_02920 +0.8 2.6 serine recombinase compare
AO353_09015 +0.8 3.0 DNA-binding protein compare
AO353_06850 +0.8 3.2 MFS transporter compare
AO353_02640 +0.8 1.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO353_18770 +0.7 5.0 flagellar biosynthesis protein FlhA compare
AO353_09155 +0.7 4.4 amino acid dehydrogenase compare
AO353_07940 +0.7 2.0 hypothetical protein compare
AO353_13685 +0.7 3.5 3-dehydroquinate dehydratase compare
AO353_18595 +0.7 3.6 flagellar biosynthesis protein FlgF compare
AO353_15470 +0.7 5.7 protoheme IX farnesyltransferase compare
AO353_02855 +0.7 4.1 flagellar basal-body rod protein FlgC compare
AO353_04930 +0.7 2.1 flavodoxin compare
AO353_18610 +0.7 3.0 flagellar biosynthesis protein FlgI compare
AO353_15875 +0.7 3.1 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO353_27380 +0.7 1.0 pyocin R2, holin compare
AO353_07935 +0.7 1.8 hypothetical protein compare
AO353_15535 +0.7 2.6 hypothetical protein compare
AO353_28295 +0.7 1.8 GNAT family acetyltransferase compare
AO353_18680 +0.7 2.9 flagellar M-ring protein FliF compare
AO353_18755 +0.7 3.2 flagellar biosynthetic protein FliR compare
AO353_20065 +0.7 3.3 hypothetical protein compare
AO353_02715 +0.7 2.4 23S rRNA methyltransferase compare
AO353_24870 +0.7 3.2 hypothetical protein compare
AO353_14995 +0.7 3.4 16S rRNA methyltransferase compare
AO353_02975 +0.7 2.4 aspartate kinase compare
AO353_10230 +0.7 5.3 glycosyltransferase compare
AO353_18725 +0.7 3.1 flagellar basal body protein FliL compare
AO353_10440 +0.7 2.3 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_23440 +0.7 1.2 hypothetical protein compare
AO353_14470 +0.7 5.0 hypothetical protein compare
AO353_19090 +0.7 1.6 MarR family transcriptional regulator compare
AO353_21440 +0.7 2.2 hypothetical protein compare
AO353_00445 +0.7 5.2 helicase compare
AO353_01375 +0.7 3.2 phosphate acyltransferase compare
AO353_19340 +0.7 5.0 amino acid ABC transporter substrate-binding protein compare
AO353_20660 +0.7 2.0 pseudouridine synthase compare
AO353_07980 +0.7 3.2 cytochrome C compare
AO353_03515 +0.7 0.7 cold-shock protein compare
AO353_15185 +0.7 2.0 ATPase compare
AO353_10945 +0.7 1.6 cytochrome C compare
AO353_17750 +0.6 1.4 transcriptional regulator compare
AO353_02685 +0.6 1.9 phosphoribosylglycinamide formyltransferase compare
AO353_18325 +0.6 1.4 hypothetical protein compare
AO353_00105 +0.6 0.9 hypothetical protein compare
AO353_20095 +0.6 3.0 histidine kinase compare
AO353_14405 +0.6 4.8 ATPase compare
AO353_02990 +0.6 1.3 6,7-dimethyl-8-ribityllumazine synthase compare
AO353_00100 +0.6 2.6 hypothetical protein compare
AO353_04775 +0.6 2.0 hypothetical protein compare
AO353_22530 +0.6 1.9 hypothetical protein compare


Specific Phenotypes

For 17 genes in this experiment

For stress Rifampicin in Pseudomonas fluorescens FW300-N2E3

For stress Rifampicin across organisms