Experiment set3IT085 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Rifampicin 0.005 mg/ml

Group: stress
Media: LB + Rifampicin (0.005 mg/ml) + Dimethyl Sulfoxide (1.071428571 vol%)
Culturing: pseudo3_N2E3_ML2, 48 well microplate; Tecan Infinite F200, Aerobic, at 25 (C), shaken=orbital
By: Jayashree on 6/26/2014
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: 956 F3,F4

Specific Phenotypes

For 17 genes in this experiment

For stress Rifampicin in Pseudomonas fluorescens FW300-N2E3

For stress Rifampicin across organisms

SEED Subsystems

Subsystem #Specific
ABC transporter alkylphosphonate (TC 3.A.1.9.1) 1
DNA-replication 1
DNA repair, bacterial MutL-MutS system 1
Oxidative stress 1
Photorespiration (oxidative C2 cycle) 1
Rhamnose containing glycans 1
Ribosomal protein S12p Asp methylthiotransferase 1
Teichoic and lipoteichoic acids biosynthesis 1
Transcription factors bacterial 1
tRNA processing 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
superoxide radicals degradation 2 2 1
methanol oxidation to formaldehyde IV 2 1 1
ethanol degradation IV 3 3 1
reactive oxygen species degradation 4 4 1
Escherichia coli serotype O:8 O antigen biosynthesis 9 2 1