Experiment set3IT084 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB with Sodium perchlorate monohydrate 50 mM

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -5.4 -4.7 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_2574 -4.1 -4.0 Flagellar synthesis regulator FleN compare
Pf6N2E2_3835 -3.9 -6.0 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_3461 -3.9 -2.6 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_5527 -3.8 -4.4 Cold shock protein CspC compare
Pf6N2E2_4584 -3.6 -4.9 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Pf6N2E2_4352 -3.3 -5.8 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_4162 -3.2 -5.4 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_3060 -3.2 -5.4 Outer membrane protein H precursor compare
Pf6N2E2_5001 -3.1 -4.3 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_2753 -2.5 -5.2 HtrA protease/chaperone protein compare
Pf6N2E2_3285 -2.2 -5.6 Rod shape-determining protein MreD compare
Pf6N2E2_5219 -2.1 -7.8 FIG140336: TPR domain protein compare
Pf6N2E2_4611 -2.1 -3.7 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_3834 -2.0 -9.8 Lipoprotein NlpD compare
Pf6N2E2_3833 -1.9 -4.9 hypothetical protein compare
Pf6N2E2_2217 -1.9 -6.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_4075 -1.9 -7.1 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Pf6N2E2_5780 -1.9 -9.8 Periplasmic protease compare
Pf6N2E2_5006 -1.8 -9.4 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_2508 -1.8 -3.8 hypothetical protein compare
Pf6N2E2_4052 -1.7 -2.7 FIG00955481: hypothetical protein compare
Pf6N2E2_4585 -1.7 -10.5 Cell division protein FtsX compare
Pf6N2E2_4974 -1.7 -8.3 DedA protein compare
Pf6N2E2_4416 -1.7 -3.4 Tyrosine recombinase XerC compare
Pf6N2E2_2756 -1.6 -7.3 RNA polymerase sigma-H factor AlgT compare
Pf6N2E2_3460 -1.5 -1.6 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_4071 -1.5 -5.4 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_2507 -1.4 -4.6 Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase (EC 2.7.8.-) compare
Pf6N2E2_4353 -1.4 -6.0 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_3258 -1.4 -4.9 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_5536 -1.3 -1.9 Holliday junction DNA helicase RuvA compare
Pf6N2E2_146 -1.3 -2.6 Transcriptional regulator, MarR family compare
Pf6N2E2_3516 -1.3 -2.4 Probable transmembrane protein compare
Pf6N2E2_3617 -1.3 -5.4 N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) compare
Pf6N2E2_5181 -1.3 -8.6 Paraquat-inducible protein A compare
Pf6N2E2_1932 -1.3 -4.4 Transcriptional regulator, IclR family compare
Pf6N2E2_3661 -1.3 -3.9 hypothetical protein compare
Pf6N2E2_813 -1.3 -4.6 Response regulator compare
Pf6N2E2_2746 -1.2 -5.6 Outer membrane protein NlpB, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and YfgL); Lipoprotein-34 precursor compare
Pf6N2E2_4996 -1.2 -3.3 LSU m3Psi1915 methyltransferase RlmH compare
Pf6N2E2_1294 -1.2 -2.7 Carbon starvation protein A compare
Pf6N2E2_3656 -1.2 -5.6 Probable transcription regulator Mig-14 compare
Pf6N2E2_2588 -1.2 -3.0 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf6N2E2_1081 -1.2 -1.9 probable membrane protein YPO3302 compare
Pf6N2E2_4150 -1.2 -2.5 probable exported protein YPO0432 compare
Pf6N2E2_4072 -1.1 -3.9 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Pf6N2E2_4074 -1.1 -9.0 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf6N2E2_3027 -1.1 -2.1 Baseplate assembly protein V compare
Pf6N2E2_2325 -1.1 -4.4 Recombination protein RecR compare
Pf6N2E2_3655 -1.1 -8.3 Hypothetical protein FIG015671 in large core OS assembly cluster compare
Pf6N2E2_4659 -1.1 -5.6 Lipoprotein, putative compare
Pf6N2E2_2510 -1.1 -2.2 Lipid carrier : UDP-N-acetylgalactosaminyltransferase (EC 2.4.1.-) / Alpha-1,3-N-acetylgalactosamine transferase PglA (EC 2.4.1.-); Putative glycosyltransferase compare
Pf6N2E2_2513 -1.1 -3.1 UDP-glucose dehydrogenase (EC 1.1.1.22) compare
Pf6N2E2_4273 -1.1 -5.5 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_4969 -1.1 -1.4 hypothetical protein compare
Pf6N2E2_5171 -1.1 -8.8 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_1238 -1.0 -2.6 hypothetical protein compare
Pf6N2E2_3351 -1.0 -3.6 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_5255 -1.0 -6.9 Outer membrane stress sensor protease DegS compare
Pf6N2E2_5771 -1.0 -5.4 FKBP-type peptidyl-prolyl cis-trans isomerase FklB (EC 5.2.1.8) compare
Pf6N2E2_816 -1.0 -4.9 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf6N2E2_698 -1.0 -2.6 Heme d1 biosynthesis protein NirH compare
Pf6N2E2_4152 -1.0 -6.0 alginate biosynthesis transcriptional regulatory protein AlgB compare
Pf6N2E2_2934 -1.0 -2.8 lipoprotein, putative compare
Pf6N2E2_5316 -1.0 -1.8 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_3761 -0.9 -8.4 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_818 -0.9 -4.5 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_5182 -0.9 -4.5 Paraquat-inducible protein A compare
Pf6N2E2_5243 -0.9 -2.1 hypothetical protein compare
Pf6N2E2_3039 -0.9 -4.5 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Pf6N2E2_4372 -0.9 -3.6 FIG00460773: hypothetical protein compare
Pf6N2E2_75 -0.9 -2.5 Colicin V production protein compare
Pf6N2E2_3515 -0.9 -5.3 Probable transmembrane protein compare
Pf6N2E2_3664 -0.9 -5.6 Carbamoyltransferase in large core OS assembly cluster compare
Pf6N2E2_2152 -0.9 -2.0 hypothetical protein compare
Pf6N2E2_4197 -0.9 -6.0 DNA recombination and repair protein RecF compare
Pf6N2E2_4556 -0.9 -2.9 FIG00953078: hypothetical protein compare
Pf6N2E2_6057 -0.8 -2.7 FIG002781: Alpha-L-glutamate ligase family protein compare
Pf6N2E2_5183 -0.8 -6.7 Paraquat-inducible protein B compare
Pf6N2E2_1065 -0.8 -2.7 Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system compare
Pf6N2E2_5544 -0.8 -4.7 TPR repeat containing exported protein; Putative periplasmic protein contains a protein prenylyltransferase domain compare
Pf6N2E2_1279 -0.8 -2.2 Putative PpiC-type peptidyl-prolyl cis-trans isomerase precursor associated with VreARI signaling system compare
Pf6N2E2_4206 -0.8 -1.3 Chromosome (plasmid) partitioning protein ParB compare
Pf6N2E2_2181 -0.8 -1.2 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf6N2E2_2218 -0.8 -3.4 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_55 -0.8 -2.5 Probable hydrolase compare
Pf6N2E2_122 -0.8 -2.1 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_5508 -0.8 -1.6 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_4059 -0.8 -1.1 DNA-binding protein HU-alpha compare
Pf6N2E2_5430 -0.8 -4.3 Transglycosylase, Slt family compare
Pf6N2E2_4691 -0.8 -1.3 hypothetical protein compare
Pf6N2E2_2018 -0.7 -1.3 hypothetical protein compare
Pf6N2E2_2752 -0.7 -4.3 Exported zinc metalloprotease YfgC precursor compare
Pf6N2E2_2992 -0.7 -2.9 Regulatory protein RecX compare
Pf6N2E2_3663 -0.7 -3.3 Glycosyl transferase compare
Pf6N2E2_3257 -0.7 -2.1 Uncharacterized ABC transporter, auxiliary component YrbC compare
Pf6N2E2_5739 -0.7 -1.5 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_2367 -0.7 -1.3 hypothetical protein compare
Pf6N2E2_2261 -0.7 -3.8 VacJ-like lipoprotein precursor compare
Pf6N2E2_4579 -0.7 -1.6 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) compare
Pf6N2E2_5428 -0.7 -3.8 DNA recombination and repair protein RecO compare
Pf6N2E2_464 -0.7 -1.6 Sensory histidine kinase QseC compare
Pf6N2E2_2827 -0.7 -1.3 hypothetical protein compare
Pf6N2E2_1441 -0.7 -1.3 Uncharacterized oxidoreductase ydgJ (EC 1.-.-.-) compare
Pf6N2E2_1776 -0.7 -2.1 Chemotaxis protein CheD compare
Pf6N2E2_2988 -0.7 -3.9 Putative NADPH-quinone reductase (modulator of drug activity B) compare
Pf6N2E2_1577 -0.7 -2.0 Glucose 1-dehydrogenase (EC 1.1.1.47) compare
Pf6N2E2_5862 -0.7 -1.2 Lipoprotein, putative compare
Pf6N2E2_4478 -0.7 -4.4 FIG019278: hypothetical protein compare
Pf6N2E2_3715 -0.7 -3.9 FIGfam138462: Acyl-CoA synthetase, AMP-(fatty) acid ligase / (3R)-hydroxymyristoyl-[ACP] dehydratase (EC 4.2.1.-) compare
Pf6N2E2_3534 -0.7 -1.2 Cobalamin biosynthesis protein CobG compare
Pf6N2E2_3667 -0.7 -1.2 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_4886 -0.7 -5.0 Catalase (EC 1.11.1.6) compare
Pf6N2E2_2124 -0.7 -1.1 Mg(2+) transport ATPase protein C compare
Pf6N2E2_815 -0.7 -3.6 Signal transduction histidine kinase compare
Pf6N2E2_2682 -0.7 -2.0 Transcriptional regulator, LysR family compare
Pf6N2E2_1141 -0.6 -1.7 Lipid-A-disaccharide synthase (EC 2.4.1.182) compare
Pf6N2E2_3349 -0.6 -2.2 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) compare
Pf6N2E2_3546 -0.6 -2.2 ABC transporter (iron.B12.siderophore.hemin) , permease component compare
Pf6N2E2_4474 -0.6 -3.7 FIG006231: RNA-binding protein compare
Pf6N2E2_5245 -0.6 -3.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1782 -0.6 -1.8 STAS domain protein compare
Pf6N2E2_5452 -0.6 -2.3 hypothetical protein compare
Pf6N2E2_579 -0.6 -1.4 FIG00962753: hypothetical protein compare
Pf6N2E2_734 -0.6 -2.4 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_822 -0.6 -3.1 TPR domain protein compare
Pf6N2E2_3132 -0.6 -2.2 FIG00954548: hypothetical protein compare
Pf6N2E2_778 -0.6 -2.4 Probable lipoprotein signal peptide compare
Pf6N2E2_2514 -0.6 -2.2 regulator of length of O-antigen component of lipopolysaccharide chains compare
Pf6N2E2_3533 -0.6 -2.2 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf6N2E2_4362 -0.6 -1.9 DNA-directed RNA polymerase omega subunit (EC 2.7.7.6) compare
Pf6N2E2_5450 -0.6 -3.9 FIG00958314: hypothetical protein compare
Pf6N2E2_2712 -0.6 -3.5 Permeases of the major facilitator superfamily compare
Pf6N2E2_5453 -0.6 -1.2 hypothetical protein compare
Pf6N2E2_5746 -0.6 -1.7 Cobalamin synthase compare
Pf6N2E2_1113 -0.6 -1.7 Transcriptional regulator, TetR family compare
Pf6N2E2_5704 -0.6 -3.2 Transcriptional regulatory protein PhoP compare
Pf6N2E2_5703 -0.6 -1.6 outer membrane protein H1 compare
Pf6N2E2_3120 -0.6 -2.7 Chemotaxis signal transduction protein compare
Pf6N2E2_1283 -0.6 -1.4 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_189 -0.6 -1.9 regulatory protein, putative compare
Pf6N2E2_4987 -0.6 -1.0 MaoC-like domain protein compare
Pf6N2E2_142 -0.6 -1.8 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_3271 -0.6 -1.7 Phosphocarrier protein, nitrogen regulation associated compare
Pf6N2E2_1445 -0.6 -1.3 Glutathione S-transferase compare
Pf6N2E2_3370 -0.6 -4.4 DNA repair protein RecN compare
Pf6N2E2_2973 -0.6 -2.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_77 -0.6 -2.8 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
Pf6N2E2_1148 -0.6 -1.8 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf6N2E2_4993 -0.6 -1.0 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf6N2E2_1302 -0.6 -2.0 TRAP-type C4-dicarboxylate transport system, large permease component compare
Pf6N2E2_1673 -0.6 -1.3 Transcriptional regulator, TetR family compare
Pf6N2E2_2068 -0.6 -3.8 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) compare
Pf6N2E2_5506 -0.6 -4.0 Exodeoxyribonuclease I (EC 3.1.11.1) compare
Pf6N2E2_3856 -0.6 -3.2 Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) compare
Pf6N2E2_3713 -0.6 -1.7 Acyl carrier protein compare
Pf6N2E2_2509 -0.6 -1.0 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf6N2E2_5987 -0.6 -3.1 OmpA family protein compare
Pf6N2E2_21 -0.6 -2.4 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis compare
Pf6N2E2_5178 -0.5 -1.0 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_3055 -0.5 -2.3 Ribonuclease HII (EC 3.1.26.4) compare
Pf6N2E2_5225 -0.5 -4.2 Lipid A 3-O-deacylase compare
Pf6N2E2_2519 -0.5 -1.0 Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57) compare
Pf6N2E2_3531 -0.5 -3.0 Cobalamin biosynthesis protein CbiG / Cobalt-precorrin-3b C17-methyltransferase compare
Pf6N2E2_3498 -0.5 -1.7 FIG00953349: hypothetical protein compare
Pf6N2E2_2139 -0.5 -1.8 Paraquat-inducible protein A compare
Pf6N2E2_509 -0.5 -2.7 Glutathione S-transferase, unnamed subgroup 2 (EC 2.5.1.18) compare
Pf6N2E2_1463 -0.5 -1.4 Isochorismate pyruvate-lyase (EC 4.-.-.-) compare
Pf6N2E2_5986 -0.5 -1.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_4181 -0.5 -0.9 Organic hydroperoxide resistance protein compare
Pf6N2E2_5128 -0.5 -2.2 COG1496: Uncharacterized conserved protein compare
Pf6N2E2_133 -0.5 -1.6 hypothetical protein compare
Pf6N2E2_3323 -0.5 -1.9 hypothetical protein compare
Pf6N2E2_3729 -0.5 -2.2 FIG138576: 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) compare
Pf6N2E2_3015 -0.5 -1.8 hypothetical protein compare
Pf6N2E2_2253 -0.5 -1.4 hypothetical protein compare
Pf6N2E2_712 -0.5 -2.1 hypothetical protein compare
Pf6N2E2_6058 -0.5 -2.2 FIG139976: hypothetical protein compare
Pf6N2E2_5534 -0.5 -2.9 FIG000859: hypothetical protein YebC compare
Pf6N2E2_3373 -0.5 -1.3 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_3118 -0.5 -2.6 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf6N2E2_3024 -0.5 -1.2 Phage tail fibers compare
Pf6N2E2_4581 -0.5 -3.5 FIG015547: peptidase, M16 family compare
Pf6N2E2_502 -0.5 -1.4 hypothetical protein compare
Pf6N2E2_2506 -0.5 -4.0 nucleotide sugar epimerase/dehydratase WbpM compare
Pf6N2E2_5020 -0.5 -1.9 FIG00955339: hypothetical protein compare
Pf6N2E2_1323 -0.5 -1.3 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_2065 -0.5 -1.6 Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) compare
Pf6N2E2_5594 -0.5 -2.5 Endonuclease III (EC 4.2.99.18) compare
Pf6N2E2_2656 -0.5 -2.3 Undecaprenyl pyrophosphate synthase compare
Pf6N2E2_1937 -0.5 -2.7 Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative compare
Pf6N2E2_5419 -0.5 -1.6 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf6N2E2_4067 -0.5 -3.1 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) compare
Pf6N2E2_291 -0.5 -2.6 ATP-dependent Clp protease adaptor protein ClpS compare
Pf6N2E2_5252 -0.5 -1.1 FIG00956396: hypothetical protein compare
Pf6N2E2_5088 -0.5 -1.2 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_136 -0.5 -1.4 Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE compare
Pf6N2E2_2175 -0.5 -1.3 Transcriptional regulator, RpiR family compare
Pf6N2E2_319 -0.5 -1.2 DUF1850 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in stress experiments

For stress Sodium perchlorate monohydrate across organisms