Experiment set3IT084 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Spectinomycin dihydrochloride pentahydrate 0.2 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_26835 -3.9 -3.7 transcriptional regulator compare
AO353_17290 -3.7 -6.1 multidrug transporter compare
AO353_15410 -3.6 -2.5 hypothetical protein compare
AO353_08170 -3.5 -4.8 hypothetical protein compare
AO353_22685 -3.5 -4.2 peroxidase compare
AO353_06415 -3.5 -4.8 hypothetical protein compare
AO353_26845 -3.4 -12.8 acriflavine resistance protein B compare
AO353_03585 -3.4 -4.9 ATP-dependent DNA helicase RuvA compare
AO353_11750 -3.3 -2.3 ATPase compare
AO353_04035 -3.1 -5.1 exclusion suppressor FxsA compare
AO353_09875 -3.0 -2.2 hypothetical protein compare
AO353_04490 -3.0 -10.3 murein transglycosylase compare
AO353_13160 -2.9 -2.8 membrane protease HflC compare
AO353_04565 -2.9 -6.5 nucleoid-associated protein compare
AO353_07315 -2.8 -2.7 rRNA methyltransferase compare
AO353_03360 -2.6 -8.6 glucose-6-phosphate dehydrogenase compare
AO353_06455 -2.6 -3.1 D-alanyl-D-alanine carboxypeptidase compare
AO353_08350 -2.6 -8.9 hypothetical protein compare
AO353_08885 -2.6 -16.7 polyphosphate kinase compare
AO353_09315 -2.6 -9.8 LysR family transcriptional regulator compare
AO353_10930 -2.5 -8.8 DNA polymerase I compare
AO353_10065 -2.5 -8.4 hypothetical protein compare
AO353_16195 -2.4 -1.8 DNA mismatch repair protein MutT compare
AO353_09915 -2.4 -6.4 long-chain acyl-CoA thioester hydrolase compare
AO353_13220 -2.4 -7.2 hypothetical protein compare
AO353_26840 -2.3 -2.9 RND transporter compare
AO353_13225 -2.3 -4.1 50S ribosomal protein L9 compare
AO353_06040 -2.3 -3.4 exodeoxyribonuclease V subunit alpha compare
AO353_19020 -2.2 -2.8 hypothetical protein compare
AO353_16495 -2.2 -6.8 zinc metallopeptidase RseP compare
AO353_04190 -2.2 -2.5 glycerol-3-phosphate dehydrogenase compare
AO353_09950 -2.2 -4.9 aspartate ammonia-lyase compare
AO353_26550 -2.1 -2.8 hypothetical protein compare
AO353_00825 -2.1 -4.4 porin compare
AO353_03795 -2.1 -4.8 fumarate hydratase compare
AO353_20200 -2.1 -4.6 peptidylprolyl isomerase compare
AO353_09320 -2.0 -9.1 ATP-dependent DNA helicase RecG compare
AO353_12145 -2.0 -5.2 nitrogen regulation protein NR(I) compare
AO353_11730 -2.0 -9.1 glutamate--cysteine ligase compare
AO353_13685 -2.0 -4.9 3-dehydroquinate dehydratase compare
AO353_15900 -2.0 -2.9 GTP-binding protein compare
AO353_27650 -2.0 -5.0 cell division protein FtsK compare
AO353_16980 -2.0 -2.0 isochorismatase compare
AO353_03775 -1.9 -8.6 pyruvate kinase compare
AO353_12015 -1.9 -3.4 antitoxin compare
AO353_13720 -1.9 -12.2 arginine decarboxylase compare
AO353_27695 -1.9 -7.9 isocitrate dehydrogenase compare
AO353_10430 -1.9 -3.9 chromosome partitioning protein ParB compare
AO353_09890 -1.8 -4.3 phosphate ABC transporter ATP-binding protein compare
AO353_08110 -1.8 -6.2 glutathione synthetase compare
AO353_00510 -1.8 -5.3 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_00505 -1.8 -4.3 3-ketoacyl-CoA thiolase compare
AO353_02710 -1.8 -10.4 (p)ppGpp synthetase compare
AO353_03545 -1.8 -7.6 hypothetical protein compare
AO353_18715 -1.8 -1.5 histidine kinase compare
AO353_06050 -1.8 -6.1 exodeoxyribonuclease V subunit gamma compare
AO353_13155 -1.8 -4.0 hypothetical protein compare
AO353_08100 -1.7 -3.4 chemotaxis protein CheY compare
AO353_03420 -1.7 -4.6 phosphogluconate dehydratase compare
AO353_15290 -1.7 -6.5 methyltransferase compare
AO353_02995 -1.7 -6.6 succinylglutamate desuccinylase compare
AO353_02250 -1.7 -3.6 chorismate synthase compare
AO353_23710 -1.6 -5.0 protein BatD compare
AO353_07555 -1.6 -3.3 glycine cleavage system protein R compare
AO353_07935 -1.6 -4.5 hypothetical protein compare
AO353_12110 -1.6 -6.9 peptidase M23 compare
AO353_23715 -1.6 -6.2 hypothetical protein compare
AO353_12535 -1.6 -3.4 hypothetical protein compare
AO353_20185 -1.6 -5.5 DNA-binding protein compare
AO353_23410 -1.6 -1.8 hypothetical protein compare
AO353_15905 -1.5 -6.4 outer membrane protein assembly factor BamB compare
AO353_03580 -1.5 -3.8 ATP-dependent DNA helicase RuvB compare
AO353_19015 -1.5 -10.1 hypothetical protein compare
AO353_22655 -1.5 -5.9 hypothetical protein compare
AO353_17295 -1.5 -9.6 multidrug transporter compare
AO353_25550 -1.5 -6.0 4-amino-4-deoxy-L-arabinose transferase compare
AO353_18780 -1.5 -6.0 cobyrinic acid a,c-diamide synthase compare
AO353_28815 -1.5 -2.2 hypothetical protein compare
AO353_17300 -1.5 -4.9 antibiotic transporter compare
AO353_26520 -1.4 -3.2 TetR family transcriptional regulator compare
AO353_14150 -1.4 -1.9 peptidylprolyl isomerase compare
AO353_21425 -1.4 -4.1 hypothetical protein compare
AO353_09060 -1.4 -2.5 hypothetical protein compare
AO353_03595 -1.4 -3.0 hypothetical protein compare
AO353_00515 -1.4 -3.3 hypothetical protein compare
AO353_01595 -1.4 -1.9 Flp pilus assembly protein CpaB compare
AO353_04240 -1.4 -1.1 chemotaxis protein CheW compare
AO353_17675 -1.4 -4.1 hypothetical protein compare
AO353_11165 -1.4 -7.6 hypothetical protein compare
AO353_18170 -1.4 -6.6 aspartyl beta-hydroxylase compare
AO353_10320 -1.4 -2.0 hypothetical protein compare
AO353_14370 -1.4 -4.9 glucose-6-phosphate isomerase compare
AO353_03590 -1.4 -3.2 crossover junction endodeoxyribonuclease RuvC compare
AO353_18120 -1.4 -2.2 hypothetical protein compare
AO353_23720 -1.4 -3.5 BatB protein compare
AO353_15645 -1.4 -2.3 hypothetical protein compare
AO353_06045 -1.4 -5.8 exodeoxyribonuclease V subunit beta compare
AO353_23725 -1.3 -3.6 hypothetical protein compare
AO353_26100 -1.3 -2.0 lysozyme compare
AO353_29005 -1.3 -2.5 hypothetical protein compare
AO353_20565 -1.3 -1.8 tRNA-Ala compare
AO353_15725 -1.3 -3.6 hypothetical protein compare
AO353_23735 -1.3 -5.6 AAA family ATPase compare
AO353_09905 -1.3 -6.2 phosphate-binding protein compare
AO353_23615 -1.3 -4.9 peptidase S54 compare
AO353_09250 -1.3 -2.8 exodeoxyribonuclease III compare
AO353_00495 -1.3 -2.0 DNA topoisomerase I compare
AO353_27215 -1.3 -2.3 hypothetical protein compare
AO353_25505 -1.3 -7.1 4-amino-4-deoxy-L-arabinose transferase compare
AO353_08105 -1.2 -4.1 pilus assembly protein PilG compare
AO353_16350 -1.2 -2.8 SAM-dependent methyltransferase compare
AO353_20175 -1.2 -2.8 ATP-dependent Clp protease proteolytic subunit compare
AO353_02810 -1.2 -5.4 histidine kinase compare
AO353_09240 -1.2 -2.8 acetylglutamate kinase compare
AO353_10055 -1.2 -7.4 DNA helicase II compare
AO353_12090 -1.2 -1.9 imidazole glycerol phosphate synthase subunit HisF compare
AO353_05010 -1.2 -2.4 HopJ type III effector protein compare
AO353_28110 -1.2 -3.4 TetR family transcriptional regulator compare
AO353_14945 -1.2 -2.6 hypothetical protein compare
AO353_07205 -1.2 -3.8 lipoate--protein ligase compare
AO353_01795 -1.2 -1.8 hypothetical protein compare
AO353_15270 -1.2 -3.3 phospholipid-binding protein compare
AO353_10630 -1.2 -3.7 16S rRNA methyltransferase compare
AO353_20840 -1.2 -1.7 ribose pyranase compare
AO353_02685 -1.1 -2.8 phosphoribosylglycinamide formyltransferase compare
AO353_00750 -1.1 -2.9 GntR family transcriptional regulator compare
AO353_01725 -1.1 -2.8 phosphohistidine phosphatase compare
AO353_03815 -1.1 -1.3 heme utilization protein compare
AO353_09275 -1.1 -1.9 DNA-directed RNA polymerase subunit omega compare
AO353_18560 -1.1 -1.7 class I peptide chain release factor compare
AO353_12460 -1.1 -5.6 malate dehydrogenase compare
AO353_15260 -1.1 -3.6 stringent starvation protein A compare
AO353_11530 -1.1 -5.4 diguanylate cyclase compare
AO353_19360 -1.1 -1.4 peroxiredoxin compare
AO353_08980 -1.1 -2.7 heme biosynthesis operon protein HemX compare
AO353_04965 -1.1 -3.1 D-erythro-7,8-dihydroneopterin triphosphate epimerase compare
AO353_11485 -1.1 -2.9 hypothetical protein compare
AO353_19090 -1.1 -1.7 MarR family transcriptional regulator compare
AO353_23730 -1.1 -2.0 hypothetical protein compare
AO353_20680 -1.1 -3.3 cell division protein compare
AO353_03830 -1.1 -1.1 antibiotic biosynthesis monooxygenase compare
AO353_12665 -1.1 -2.0 glycosyl transferase compare
AO353_12115 -1.0 -1.9 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_14060 -1.0 -1.9 hypothetical protein compare
AO353_00360 -1.0 -3.4 ATPase compare
AO353_02765 -1.0 -1.9 NAD(P)H-quinone oxidoreductase compare
AO353_08265 -1.0 -4.0 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_02945 -1.0 -5.2 magnesium transporter compare
AO353_12350 -1.0 -2.5 preprotein translocase compare
AO353_26945 -1.0 -2.0 transcriptional regulator compare
AO353_16805 -1.0 -3.6 recombinase RecA compare
AO353_15830 -1.0 -2.5 transcriptional regulator compare
AO353_20505 -1.0 -3.2 cytidyltransferase compare
AO353_08560 -1.0 -4.4 spermidine/putrescine ABC transporter permease compare
AO353_20860 -1.0 -2.2 hypothetical protein compare
AO353_13390 -1.0 -4.8 N-acylglucosamine 2-epimerase compare
AO353_13130 -1.0 -2.7 N-acetylmuramoyl-L-alanine amidase compare
AO353_02570 -1.0 -1.5 hypothetical protein compare
AO353_02940 -1.0 -2.0 DNA-binding protein compare
AO353_27925 -1.0 -1.4 hypothetical protein compare
AO353_09785 -1.0 -1.9 hypothetical protein compare
AO353_09260 -1.0 -4.2 ribonuclease PH compare
AO353_20685 -1.0 -3.9 colicin V production CvpA compare
AO353_07170 -1.0 -5.8 hypothetical protein compare
AO353_04810 -1.0 -1.4 hypothetical protein compare
AO353_22800 -1.0 -2.4 sulfite reductase compare
AO353_23495 -1.0 -1.6 SAM-dependent methyltransferase compare
AO353_07495 -1.0 -6.6 acyl-CoA dehydrogenase compare
AO353_17100 -1.0 -2.3 hypothetical protein compare
AO353_14415 -1.0 -4.4 glutamyl-Q tRNA(Asp) ligase compare
AO353_13200 -0.9 -5.9 exoribonuclease R compare
AO353_00195 -0.9 -1.5 virion morphogenesis protein compare
AO353_13100 -0.9 -1.5 GTPase RsgA compare
AO353_02235 -0.9 -2.8 acireductone dioxygenase compare
AO353_00430 -0.9 -2.8 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_19295 -0.9 -1.9 hypothetical protein compare
AO353_10500 -0.9 -2.5 acetylornithine aminotransferase compare
AO353_10625 -0.9 -6.4 potassium transporter peripheral membrane component compare
AO353_08165 -0.9 -1.9 pyrroline-5-carboxylate reductase compare
AO353_28080 -0.9 -2.3 hypothetical protein compare
AO353_13150 -0.9 -3.6 GTPase HflX compare
AO353_08095 -0.9 -4.0 protein PilI compare
AO353_08080 -0.9 -4.0 chemotaxis protein compare
AO353_15185 -0.9 -2.6 ATPase compare
AO353_26320 -0.9 -3.3 hypothetical protein compare
AO353_04365 -0.9 -2.8 recombinase XerD compare
AO353_06710 -0.9 -1.6 riboflavin synthase subunit alpha compare
AO353_09045 -0.9 -1.7 hypothetical protein compare
AO353_17645 -0.9 -5.3 peptidase M48 compare
AO353_11850 -0.9 -2.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_05840 -0.9 -5.7 dolichyl-phosphate-mannose-protein mannosyltransferase compare
AO353_22110 -0.9 -2.7 nitrate reductase compare
AO353_10670 -0.9 -4.0 shikimate dehydrogenase compare
AO353_07465 -0.8 -1.6 addiction module toxin RelE compare
AO353_13515 -0.8 -1.6 Urease (EC 3.5.1.5) (from data) compare
AO353_09345 -0.8 -1.8 hypothetical protein compare
AO353_25570 -0.8 -5.0 glycosyltransferase compare
AO353_09050 -0.8 -2.6 recombinase XerC compare
AO353_16250 -0.8 -3.4 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
AO353_18225 -0.8 -4.5 ATP-dependent RNA helicase HrpA compare


Specific Phenotypes

For 1 genes in this experiment

For stress Spectinomycin dihydrochloride pentahydrate in Pseudomonas fluorescens FW300-N2E3

For stress Spectinomycin dihydrochloride pentahydrate across organisms