Experiment set3IT084 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Spectinomycin dihydrochloride pentahydrate 0.2 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
AO353_19145 +3.0 11.2 protease HtpX compare
AO353_26830 +2.9 14.1 histidine kinase compare
AO353_12940 +2.6 16.5 glycosyl transferase compare
AO353_27720 +2.3 10.0 cupin compare
AO353_15450 +2.1 17.1 ubiquinol oxidase subunit II compare
AO353_12950 +2.1 11.7 polymerase compare
AO353_19825 +2.0 13.5 shikimate dehydrogenase compare
AO353_15470 +1.9 16.0 protoheme IX farnesyltransferase compare
AO353_15455 +1.9 16.0 cytochrome o ubiquinol oxidase subunit I compare
AO353_12345 +1.9 3.3 twin-arginine protein translocation system subunit TatC compare
AO353_02010 +1.8 9.5 glycosyl transferase family 1 compare
AO353_08895 +1.8 8.4 hypothetical protein compare
AO353_01970 +1.8 13.4 hypothetical protein compare
AO353_15460 +1.7 11.1 cytochrome o ubiquinol oxidase subunit III compare
AO353_08465 +1.7 14.6 phosphoenolpyruvate-protein phosphotransferase compare
AO353_15465 +1.7 9.0 cytochrome C oxidase compare
AO353_11770 +1.7 3.9 molecular chaperone Hsp33 compare
AO353_18540 +1.6 6.1 pseudouridine synthase compare
AO353_01980 +1.6 13.1 NAD-dependent dehydratase compare
AO353_02025 +1.6 11.9 mannose-1-phosphate guanyltransferase compare
AO353_01990 +1.6 8.8 UDP-N-acetylglucosamine 2-epimerase compare
AO353_05230 +1.6 10.0 ribonuclease G compare
AO353_01985 +1.6 11.3 hypothetical protein compare
AO353_01995 +1.5 12.1 hypothetical protein compare
AO353_02030 +1.5 2.9 hypothetical protein compare
AO353_07145 +1.5 11.0 anhydro-N-acetylmuramic acid kinase compare
AO353_05130 +1.4 2.8 anti-anti-sigma factor compare
AO353_02015 +1.4 8.6 acetyltransferase compare
AO353_16925 +1.4 12.5 AmpG family muropeptide MFS transporter compare
AO353_08880 +1.4 4.2 exopolyphosphatase compare
AO353_01975 +1.4 8.4 glycosyl transferase compare
AO353_01405 +1.4 7.8 23S rRNA pseudouridylate synthase compare
AO353_12935 +1.3 4.3 glycosyltransferase compare
AO353_00455 +1.3 5.7 beta-hexosaminidase compare
AO353_12420 +1.3 4.5 predicted FeS cluster maintenance protein (from data) compare
AO353_18425 +1.3 7.2 hypothetical protein compare
AO353_01355 +1.3 8.4 3-oxoacyl-ACP synthase compare
AO353_05195 +1.3 8.6 glmZ(sRNA)-inactivating NTPase compare
AO353_10730 +1.3 1.7 hypothetical protein compare
AO353_23385 +1.2 7.7 trans-2-enoyl-CoA reductase compare
AO353_20865 +1.2 2.8 cold-shock protein compare
AO353_02000 +1.2 4.7 polysaccharide/polyol phosphate ABC transporter ATP-binding protein compare
AO353_09235 +1.2 7.4 phosphoglucomutase compare
AO353_01780 +1.2 8.8 heat-shock protein Hsp90 compare
AO353_07140 +1.2 9.9 peptidase M23 compare
AO353_05240 +1.2 2.8 rod shape-determining protein MreD compare
AO353_14400 +1.2 5.4 Fis family transcriptional regulator compare
AO353_07295 +1.1 9.8 aminoglycoside phosphotransferase compare
AO353_08200 +1.1 8.1 coproporphyrinogen III oxidase compare
AO353_24535 +1.1 2.5 hypothetical protein compare
AO353_14495 +1.1 8.5 acetolactate synthase 3 catalytic subunit compare
AO353_02020 +1.1 5.1 hypothetical protein compare
AO353_00610 +1.1 2.6 cytochrome C oxidase Cbb3 compare
AO353_06365 +1.1 7.6 hypothetical protein compare
AO353_00605 +1.1 5.4 cytochrome C oxidase Cbb3 compare
AO353_15785 +1.0 7.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO353_07445 +1.0 2.2 pyrroloquinoline quinone biosynthesis protein PqqD compare
AO353_01410 +1.0 3.3 ribonuclease E compare
AO353_03670 +1.0 4.6 ornithine acetyltransferase compare
AO353_04055 +1.0 1.7 methionine--tRNA ligase compare
AO353_12945 +1.0 5.3 toluene tolerance protein compare
AO353_14500 +1.0 5.6 acetolactate synthase 3 regulatory subunit compare
AO353_12565 +1.0 2.5 type II secretion system protein GspH compare
AO353_27735 +1.0 4.4 isocitrate lyase compare
AO353_13715 +1.0 3.2 translation initiation factor Sui1 compare
AO353_24915 +0.9 1.8 hypothetical protein compare
AO353_04500 +0.9 2.5 DNA repair protein RecO compare
AO353_10270 +0.9 6.2 glycosyl transferase compare
AO353_07290 +0.9 6.8 mannose-1-phosphate guanylyltransferase compare
AO353_14740 +0.9 2.8 GTP-binding protein compare
AO353_17650 +0.9 3.0 response regulator SirA compare
AO353_04105 +0.9 5.9 argininosuccinate synthase compare
AO353_10445 +0.9 1.4 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_27350 +0.9 2.4 hypothetical protein compare
AO353_23335 +0.9 3.6 MATE family efflux transporter compare
AO353_04185 +0.9 4.9 DeoR family transcriptional regulator compare
AO353_08765 +0.9 3.6 hypothetical protein compare
AO353_05510 +0.9 5.7 N-acetyl-anhydromuranmyl-L-alanine amidase compare
AO353_04930 +0.8 2.7 flavodoxin compare
AO353_20120 +0.8 2.6 hypothetical protein compare
AO353_09265 +0.8 1.7 hypothetical protein compare
AO353_07355 +0.8 4.4 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_09660 +0.8 1.4 hypothetical protein compare
AO353_14405 +0.8 6.2 ATPase compare
AO353_05145 +0.8 3.9 ABC transporter permease compare
AO353_21625 +0.8 2.1 Fe/S biogenesis protein NfuA compare
AO353_03015 +0.8 3.7 arginine N-succinyltransferase compare
AO353_09030 +0.8 1.0 iron donor protein CyaY compare
AO353_10990 +0.8 5.2 glutamate:protein symporter compare
AO353_20810 +0.8 1.3 hypothetical protein compare
AO353_13395 +0.8 1.8 protein hupE compare
AO353_00435 +0.8 6.8 transcription-repair coupling factor compare
AO353_14395 +0.8 3.0 poly(A) polymerase compare
AO353_11775 +0.8 4.6 phosphoenolpyruvate carboxykinase [ATP] compare
AO353_00330 +0.8 5.1 hypothetical protein compare
AO353_12060 +0.8 3.4 acetyltransferase compare
AO353_05330 +0.8 5.8 ABC transporter ATP-binding protein compare
AO353_09840 +0.8 3.2 chorismate--pyruvate lyase compare
AO353_05135 +0.8 5.2 toluene tolerance protein compare
AO353_04845 +0.8 5.7 LysR family transcriptional regulator compare
AO353_09560 +0.8 1.6 type VI secretion protein compare
AO353_09395 +0.7 2.7 type VI secretion protein compare
AO353_03310 +0.7 5.2 long-chain fatty acid--CoA ligase compare
AO353_25000 +0.7 2.3 magnesium transporter compare
AO353_06725 +0.7 1.9 hypothetical protein compare
AO353_13925 +0.7 2.1 XRE family transcriptional regulator compare
AO353_24665 +0.7 4.9 phosphoglucomutase compare
AO353_25585 +0.7 1.5 argininosuccinate lyase compare
AO353_18765 +0.7 2.2 hypothetical protein compare
AO353_09405 +0.7 2.5 type VI secretion protein compare
AO353_15050 +0.7 2.6 nitrate transport permease nrtB compare
AO353_02005 +0.7 1.8 hypothetical protein compare
AO353_26090 +0.7 1.5 hypothetical protein compare
AO353_04230 +0.7 2.5 chemotaxis protein CheW compare
AO353_10455 +0.7 2.0 tRNA modification GTPase MnmE compare
AO353_13530 +0.7 2.5 ABC transporter ATP-binding protein compare
AO353_14840 +0.7 4.3 NAD-dependent dehydratase compare
AO353_05150 +0.7 3.5 ABC transporter ATP-binding protein compare
AO353_22120 +0.7 2.0 cyclic pyranopterin phosphate synthase MoaA compare
AO353_13465 +0.7 3.4 hypothetical protein compare
AO353_20590 +0.7 1.4 hydrolase compare
AO353_00620 +0.7 2.0 cytochrome C oxidase Cbb3 compare
AO353_05140 +0.7 4.5 outer membrane lipid asymmetry maintenance protein MlaD compare
AO353_04015 +0.7 4.8 histidine kinase compare
AO353_12315 +0.7 5.3 glucosyltransferase MdoH compare
AO353_09440 +0.7 1.1 type VI secretion protein compare
AO353_11125 +0.7 2.7 5S ribosomal RNA compare
AO353_12765 +0.7 1.6 transcriptional regulator compare
AO353_27380 +0.7 1.5 pyocin R2, holin compare
AO353_13800 +0.7 2.7 hypothetical protein compare
AO353_00975 +0.7 1.9 hypothetical protein compare
AO353_18680 +0.7 3.0 flagellar M-ring protein FliF compare
AO353_01190 +0.7 0.8 hypothetical protein compare
AO353_09450 +0.6 2.2 type VI secretion protein compare
AO353_03115 +0.6 2.4 TetR family transcriptional regulator compare
AO353_09135 +0.6 1.4 cytochrome C compare
AO353_04180 +0.6 3.8 glycerol kinase compare
AO353_02660 +0.6 2.8 peptidase P60 compare
AO353_03605 +0.6 0.9 FmdB family transcriptional regulator compare
AO353_26870 +0.6 1.2 AP endonuclease compare
AO353_23350 +0.6 1.6 hypothetical protein compare
AO353_03245 +0.6 3.8 permease DsdX compare
AO353_02195 +0.6 2.7 spermidine synthase compare
AO353_08535 +0.6 3.9 hypothetical protein compare
AO353_02975 +0.6 1.5 aspartate kinase compare
AO353_20620 +0.6 3.0 isopropylmalate isomerase compare
AO353_27410 +0.6 0.8 hypothetical protein compare
AO353_23450 +0.6 2.0 LysR family transcriptional regulator compare
AO353_14995 +0.6 3.3 16S rRNA methyltransferase compare
AO353_04520 +0.6 3.2 elongation factor 4 compare
AO353_04175 +0.6 2.1 glycerol uptake facilitator GlpF compare
AO353_28035 +0.6 2.9 hypothetical protein compare
AO353_04355 +0.6 1.4 homoserine dehydrogenase compare
AO353_22870 +0.6 2.2 oxidoreductase compare
AO353_22725 +0.6 2.9 hypothetical protein compare
AO353_03410 +0.6 1.9 chemotaxis protein CheY compare
AO353_22135 +0.6 2.0 anaerobic ribonucleoside-triphosphate reductase activating protein compare
AO353_21320 +0.6 1.8 glutathione S-transferase compare
AO353_04580 +0.6 2.0 GIY-YIG nuclease compare
AO353_18095 +0.6 1.8 hypothetical protein compare
AO353_22930 +0.6 1.8 hypothetical protein compare
AO353_26430 +0.6 2.7 hypothetical protein compare
AO353_08760 +0.6 4.5 Xaa-Pro aminopeptidase compare
AO353_19515 +0.6 1.5 haloacid dehalogenase compare
AO353_29340 +0.6 1.6 transporter compare
AO353_15595 +0.6 1.8 hypothetical protein compare
AO353_17635 +0.6 3.5 RNA polymerase subunit sigma compare
AO353_06670 +0.6 1.9 MFS transporter compare
AO353_03215 +0.6 1.8 pyridoxamine 5'-phosphate oxidase compare
AO353_18325 +0.6 1.2 hypothetical protein compare
AO353_07805 +0.6 3.6 betaine-aldehyde dehydrogenase compare
AO353_11720 +0.6 2.2 taurine transporter ATP-binding subunit compare
AO353_02970 +0.6 1.4 carbon storage regulator compare
AO353_28765 +0.6 2.4 hypothetical protein compare
AO353_13950 +0.6 2.1 50S rRNA methyltransferase compare
AO353_03100 +0.6 0.9 XRE family transcriptional regulator compare
AO353_06275 +0.6 1.4 DNA polymerase III subunit epsilon compare
AO353_00350 +0.6 2.0 copper-binding protein compare
AO353_27530 +0.6 2.1 acetyl-CoA acetyltransferase compare
AO353_18700 +0.6 2.1 flagellar biogenesis protein compare
AO353_19600 +0.6 3.0 NAD-dependent DNA ligase compare
AO353_26190 +0.6 2.4 hypothetical protein compare
AO353_16615 +0.6 4.1 RNA polymerase sigma factor RpoS compare
AO353_20115 +0.6 1.9 LysR family transcriptional regulator compare
AO353_19530 +0.5 1.2 quinohemoprotein amine dehydrogenase compare
AO353_12310 +0.5 3.9 glucan biosynthesis protein G compare
AO353_21080 +0.5 2.4 hypothetical protein compare
AO353_15885 +0.5 1.8 Cro/Cl family transcriptional regulator compare
AO353_02990 +0.5 2.0 6,7-dimethyl-8-ribityllumazine synthase compare
AO353_18685 +0.5 3.2 flagellar motor switch protein FliG compare
AO353_03935 +0.5 1.5 fructose-bisphosphate aldolase compare
AO353_17235 +0.5 2.1 4-carboxymuconolactone decarboxylase compare
AO353_17085 +0.5 1.1 hypothetical protein compare
AO353_05625 +0.5 0.7 transcription elongation factor GreA compare
AO353_12365 +0.5 1.7 phosphoribosyl-AMP cyclohydrolase compare
AO353_25450 +0.5 1.1 cyanate hydratase compare
AO353_23785 +0.5 1.0 hypothetical protein compare
AO353_09720 +0.5 0.6 hypothetical protein compare
AO353_04480 +0.5 2.0 NGG1p interacting factor NIF3 compare
AO353_22045 +0.5 2.0 molybdenum cofactor biosynthesis protein MoaA compare


Specific Phenotypes

For 1 genes in this experiment

For stress Spectinomycin dihydrochloride pentahydrate in Pseudomonas fluorescens FW300-N2E3

For stress Spectinomycin dihydrochloride pentahydrate across organisms