Experiment set3IT084 for Acidovorax sp. GW101-3H11

Compare to:

LB with Sodium nitrate 45 mM

200 most detrimental genes:

  gene name fitness t score description  
Ac3H11_4549 +5.6 4.7 Phosphonate ABC transporter ATP-binding protein (TC 3.A.1.9.1) compare
Ac3H11_4676 +1.9 3.9 Cobalt-zinc-cadmium resistance protein compare
Ac3H11_4864 +1.3 3.3 hypothetical protein compare
Ac3H11_3589 +1.3 2.4 FIG00538094: hypothetical protein compare
Ac3H11_4198 +1.1 2.7 hypothetical protein compare
Ac3H11_3587 +1.1 1.9 DNA-binding domain of ModE / Molybdate-binding domain of ModE compare
Ac3H11_1256 +1.0 2.1 Transcriptional regulator, MarR family compare
Ac3H11_3004 +1.0 2.3 UPF0225 protein YchJ compare
Ac3H11_3100 +1.0 3.2 Transcriptional regulator, AsnC family compare
Ac3H11_2551 +1.0 1.3 Conserved hypothetical protein (perhaps related to histidine degradation) compare
Ac3H11_152 +0.9 1.4 hypothetical protein compare
Ac3H11_1548 +0.9 1.1 hypothetical protein compare
Ac3H11_1032 +0.9 2.6 Truncated hemoglobins compare
Ac3H11_2899 +0.9 1.9 Probable LysR-family transcriptional regulator compare
Ac3H11_2583 +0.9 1.3 Na(+) H(+) antiporter subunit C compare
Ac3H11_1904 +0.9 2.0 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89) compare
Ac3H11_1184 +0.8 1.8 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.17) compare
Ac3H11_3626 +0.8 2.3 Probable lipoprotein signal peptide compare
Ac3H11_1174 +0.8 1.8 Transcriptional regulator, GntR family compare
Ac3H11_3722 +0.8 3.6 Urease accessory protein UreD compare
Ac3H11_89 +0.8 1.7 hypothetical protein compare
Ac3H11_21 +0.8 1.3 hypothetical protein compare
Ac3H11_1372 +0.8 1.3 Flagellar basal-body rod protein FlgG compare
Ac3H11_2891 +0.8 1.0 hypothetical protein compare
Ac3H11_1142 +0.8 1.2 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) compare
Ac3H11_2591 +0.8 2.0 TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 5 compare
Ac3H11_3693 +0.8 1.3 Urease gamma subunit (EC 3.5.1.5) compare
Ac3H11_688 +0.8 3.1 Biopolymer transport protein ExbD/TolR compare
Ac3H11_162 +0.8 0.9 TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter compare
Ac3H11_2897 +0.8 1.6 Small uncharacterized protein Bpro_4170 compare
Ac3H11_2306 +0.8 2.3 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
Ac3H11_2021 +0.8 1.1 hypothetical protein compare
Ac3H11_631 +0.7 1.5 Methionine ABC transporter ATP-binding protein compare
Ac3H11_4299 +0.7 1.2 FIG00347697: hypothetical protein compare
Ac3H11_3950 +0.7 2.4 Catalase (EC 1.11.1.6) compare
Ac3H11_2724 +0.7 1.8 Tricarboxylate transport protein TctC compare
Ac3H11_225 +0.7 1.5 Cobalt-zinc-cadmium resistance protein czcI precursor compare
Ac3H11_3741 +0.7 1.1 Mobile element protein compare
Ac3H11_1265 +0.7 2.2 FIG00931207: hypothetical protein compare
Ac3H11_4847 +0.7 1.3 hypothetical protein compare
Ac3H11_1649 +0.7 0.9 hypothetical protein compare
Ac3H11_942 +0.7 2.4 hypothetical protein compare
Ac3H11_4044 +0.7 2.2 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Ac3H11_4222 +0.7 2.3 hypothetical protein compare
Ac3H11_2189 +0.7 5.2 hypothetical protein compare
Ac3H11_4202 +0.7 1.0 hypothetical protein compare
Ac3H11_3376 +0.7 0.9 hypothetical protein compare
Ac3H11_611 +0.7 2.5 Putative sugar ABC transport system, periplasmic binding protein YtfQ precursor compare
Ac3H11_1335 +0.7 2.4 hypothetical protein compare
Ac3H11_1042 +0.6 1.7 Probable integral membrane protein compare
Ac3H11_1234 +0.6 1.9 FIG00932085: hypothetical protein compare
Ac3H11_4714 +0.6 3.5 Uncharacterized ABC transporter, periplasmic component YrbD compare
Ac3H11_4081 +0.6 1.3 bll5262; hypothetical protein compare
Ac3H11_3522 +0.6 1.5 Fumarylacetoacetate hydrolase family protein compare
Ac3H11_1755 +0.6 1.1 FIG004556: membrane metalloprotease compare
Ac3H11_3765 +0.6 1.4 Transcriptional regulator, IclR family compare
Ac3H11_3077 +0.6 3.3 hypothetical protein compare
Ac3H11_3581 +0.6 3.0 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
Ac3H11_2693 +0.6 1.9 S-adenosylhomocysteine hydrolase compare
Ac3H11_4520 +0.6 3.2 Catalyzes the cleavage of p-aminobenzoyl-glutamate to p-aminobenzoate and glutamate, subunit A compare
Ac3H11_2186 +0.6 4.2 Sensor protein basS/pmrB (EC 2.7.3.-) compare
Ac3H11_4125 +0.6 2.0 FIG000605: protein co-occurring with transport systems (COG1739) compare
Ac3H11_3519 +0.6 0.9 hypothetical protein compare
Ac3H11_1189 +0.6 2.2 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase compare
Ac3H11_4194 +0.6 0.9 DNA polymerase-like protein PA0670 compare
Ac3H11_3965 +0.6 2.5 FIG01121542: hypothetical protein compare
Ac3H11_3469 +0.6 1.3 hypothetical protein compare
Ac3H11_4546 +0.6 1.4 Phosphonates transport ATP-binding protein PhnK compare
Ac3H11_3404 +0.5 1.1 MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein compare
Ac3H11_952 +0.5 0.5 Cytochrome c551/c552 compare
Ac3H11_718 +0.5 3.2 Sensor histidine kinase compare
Ac3H11_142 +0.5 1.9 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Ac3H11_4237 +0.5 2.3 hypothetical protein compare
Ac3H11_2773 +0.5 1.9 hypothetical protein compare
Ac3H11_3321 +0.5 0.9 hypothetical protein compare
Ac3H11_3419 +0.5 1.5 Transcriptional regulator PobR, AraC family compare
Ac3H11_2646 +0.5 1.3 Mobile element protein compare
Ac3H11_4246 +0.5 1.4 hypothetical protein compare
Ac3H11_3935 +0.5 1.3 FIG006163: hypothetical protein compare
Ac3H11_3748 +0.5 1.7 Mu-like prophage FluMu protein gp36 compare
Ac3H11_91 +0.5 1.7 abhydrolase, alpha/beta hydrolase fold compare
Ac3H11_3109 +0.5 1.5 protein of unknown function DUF1332 compare
Ac3H11_3818 +0.5 0.9 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Ac3H11_4195 +0.5 2.4 RecA/RadA recombinase compare
Ac3H11_1872 +0.5 1.1 Rhodanese domain protein compare
Ac3H11_462 +0.5 1.2 Phosphate regulon sensor protein PhoR (SphS) (EC 2.7.13.3) compare
Ac3H11_1233 +0.5 2.3 YaeQ protein compare
Ac3H11_3013 +0.5 1.5 DinB family protein compare
Ac3H11_199 +0.5 2.2 Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4) compare
Ac3H11_4784 +0.5 3.0 Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46) compare
Ac3H11_3081 +0.5 0.6 Methyl-accepting chemotaxis protein compare
Ac3H11_2412 +0.5 1.0 hypothetical protein compare
Ac3H11_146 +0.5 2.0 Bll3817 protein compare
Ac3H11_2360 +0.5 3.0 Mlr7906 protein compare
Ac3H11_4647 +0.5 1.8 hypothetical protein compare
Ac3H11_2767 +0.5 1.4 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
Ac3H11_2718 +0.5 0.7 Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) compare
Ac3H11_3801 +0.5 1.8 putative lipoprotein compare
Ac3H11_86 +0.5 1.4 Possible methyltransferases compare
Ac3H11_90 +0.5 2.0 Lignostilbene-alpha,beta-dioxygenase and related enzymes compare
Ac3H11_4313 +0.5 0.8 Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) compare
Ac3H11_2478 +0.5 0.6 hypothetical protein compare
Ac3H11_1492 +0.5 1.0 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Ac3H11_4150 +0.5 1.5 diguanylate cyclase compare
Ac3H11_557 +0.5 1.6 Adenylate cyclase (EC 4.6.1.1) compare
Ac3H11_1830 +0.5 0.8 FIG00348237: hypothetical protein compare
Ac3H11_3956 +0.5 1.9 TRAP-type C4-dicarboxylate transport system, small permease component compare
Ac3H11_2207 +0.5 2.4 Chromate resistance protein ChrB compare
Ac3H11_4203 +0.5 0.9 Ferredoxin compare
Ac3H11_4254 +0.5 3.1 FIG039767: hypothetical protein compare
Ac3H11_3060 +0.5 0.8 hypothetical protein compare
Ac3H11_1072 +0.5 1.6 Transcriptional regulator, TetR family compare
Ac3H11_219 +0.5 1.4 hypothetical protein compare
Ac3H11_969 +0.5 2.1 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Ac3H11_174 +0.5 0.9 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) compare
Ac3H11_1350 +0.5 1.8 Phosphoglycerate mutase family protein compare
Ac3H11_1081 +0.5 1.7 Xanthine-uracil permease compare
Ac3H11_4416 +0.4 1.4 hypothetical protein compare
Ac3H11_3595 +0.4 1.5 carbon monoxide dehydrogenase G protein compare
Ac3H11_4336 +0.4 2.7 type I secretion system ATPase compare
Ac3H11_3021 +0.4 0.6 2-hydroxychromene-2-carboxylate isomerase compare
Ac3H11_164 +0.4 1.3 hypothetical protein compare
Ac3H11_2719 +0.4 2.3 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Ac3H11_705 +0.4 3.1 Trk system potassium uptake protein TrkA compare
Ac3H11_4306 +0.4 0.8 Predicted transcriptional regulators compare
Ac3H11_901 +0.4 1.0 Beta-lactamase (EC 3.5.2.6) compare
Ac3H11_4539 +0.4 0.7 Protein RcsF compare
Ac3H11_4538 +0.4 1.4 ATP-binding protein PhnN; Guanylate kinase (EC 2.7.4.8) compare
Ac3H11_587 +0.4 1.9 hypothetical protein compare
Ac3H11_548 +0.4 0.7 hypothetical protein compare
Ac3H11_1494 +0.4 1.6 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) compare
Ac3H11_1676 +0.4 0.9 hypothetical protein compare
Ac3H11_2566 +0.4 0.7 hypothetical protein compare
Ac3H11_4686 +0.4 1.8 hypothetical protein compare
Ac3H11_3502 +0.4 0.5 hypothetical protein compare
Ac3H11_3266 +0.4 0.8 3-demethylubiquinone-9 3-methyltransferase compare
Ac3H11_3740 +0.4 2.1 Gluconate permease compare
Ac3H11_819 +0.4 0.6 transcriptional regulators, TraR/DksA family compare
Ac3H11_783 +0.4 1.7 hypothetical protein compare
Ac3H11_2659 +0.4 1.5 hypothetical protein compare
Ac3H11_1557 +0.4 3.2 Proposed peptidoglycan lipid II flippase MurJ compare
Ac3H11_3133 +0.4 1.4 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) compare
Ac3H11_3179 +0.4 1.7 Chromosome initiation inhibitor compare
Ac3H11_3520 +0.4 1.2 TRAP-type C4-dicarboxylate transport system, large permease component compare
Ac3H11_4135 +0.4 0.8 secreted protein compare
Ac3H11_330 +0.4 1.8 hypothetical protein compare
Ac3H11_2652 +0.4 1.8 Rod shape determination protein compare
Ac3H11_4423 +0.4 3.5 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) compare
Ac3H11_2876 +0.4 1.0 hypothetical protein compare
Ac3H11_1615 +0.4 2.1 Sarcosine oxidase beta subunit (EC 1.5.3.1) compare
Ac3H11_750 +0.4 1.7 Transcriptional regulator, LysR family compare
Ac3H11_3560 +0.4 1.0 Flagellar transcriptional activator FlhD compare
Ac3H11_3288 +0.4 0.5 Basic proline-rich protein precursor compare
Ac3H11_628 +0.4 1.6 Arsenate reductase (EC 1.20.4.1) compare
Ac3H11_3007 +0.4 1.8 Glutathione S-transferase (EC 2.5.1.18) compare
Ac3H11_2190 +0.4 3.4 Permease of the drug/metabolite transporter (DMT) superfamily compare
Ac3H11_1302 +0.4 2.3 Pirin, N-terminal:Pirin, C-terminal compare
Ac3H11_4648 +0.4 2.1 DNA-binding response regulator compare
Ac3H11_1780 +0.4 2.8 Phosphodiesterase/alkaline phosphatase D compare
Ac3H11_351 +0.4 0.5 hypothetical protein compare
Ac3H11_911 +0.4 1.3 Sulfate transport system permease protein CysT compare
Ac3H11_4898 +0.4 1.5 Calcium-binding EF-hand-containing protein compare
Ac3H11_4569 +0.4 1.2 Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system protein CusA compare
Ac3H11_751 +0.4 1.2 hypothetical protein compare
Ac3H11_4186 +0.4 2.1 putative membrane protein compare
Ac3H11_2264 +0.4 1.5 Transcriptional regulator, ArsR family compare
Ac3H11_3233 +0.4 0.6 hypothetical protein compare
Ac3H11_4654 +0.4 1.7 Organic hydroperoxide resistance protein compare
Ac3H11_1770 +0.4 1.2 Threonine dehydratase (EC 4.3.1.19) compare
Ac3H11_995 +0.4 1.4 Adenosylcobinamide-phosphate synthase (EC 6.3.1.10) compare
Ac3H11_1895 +0.4 2.4 hypothetical protein compare
Ac3H11_988 +0.4 1.4 Vitamin B12 ABC transporter, B12-binding component BtuF compare
Ac3H11_4567 +0.4 1.9 hypothetical protein compare
Ac3H11_1170 +0.4 2.1 Adenylate cyclase (EC 4.6.1.1) compare
Ac3H11_2051 +0.4 1.9 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Ac3H11_2675 +0.4 0.6 hypothetical protein compare
Ac3H11_1300 +0.4 0.8 hypothetical protein compare
Ac3H11_75 +0.4 1.6 Outer membrane lipoprotein blc precursor compare
Ac3H11_3758 +0.4 1.0 hypothetical protein compare
Ac3H11_501 +0.4 1.8 ABC-type multidrug transport system, permease component compare
Ac3H11_1936 +0.4 1.7 Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1) compare
Ac3H11_971 +0.4 1.3 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Ac3H11_1084 +0.4 1.6 D-glycerate 2-kinase (EC 2.7.1.-) compare
Ac3H11_4437 +0.4 2.5 GCN5-related N-acetyltransferase compare
Ac3H11_2837 +0.4 1.9 Iron-uptake factor PiuC compare
Ac3H11_4142 +0.4 0.5 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Ac3H11_2253 +0.4 1.2 Transcriptional regulator, MarR family compare
Ac3H11_2722 +0.4 1.0 putative dioxygenase compare
Ac3H11_3976 +0.4 1.0 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Ac3H11_3494 +0.4 0.9 phage-related putative exported protein compare
Ac3H11_1282 +0.4 1.3 FOG: WD40-like repeat compare
Ac3H11_5003 +0.4 1.1 putative transmembrane protein compare
Ac3H11_2683 +0.4 1.6 Sodium/glutamate symporter compare
Ac3H11_4428 +0.4 2.2 Molybdopterin-binding protein compare
Ac3H11_1482 +0.4 1.9 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.n4) compare
Ac3H11_755 +0.4 2.6 Site-specific recombinase compare
Ac3H11_4157 +0.4 2.4 Multimeric flavodoxin WrbA compare
Ac3H11_4893 +0.3 1.8 Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein compare
Ac3H11_3037 +0.3 0.6 Fructose ABC transporter, ATP-binding component FrcA compare
Ac3H11_1380 +0.3 1.5 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Acidovorax sp. GW101-3H11 in stress experiments

For stress Sodium nitrate across organisms