Experiment set3IT084 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Ammonium chloride nitrogen source

200 most important genes:

  gene name fitness t score description  
PFLU_RS01645 -5.7 -10.9 S41 family peptidase compare
PFLU_RS03645 -5.5 -14.6 tetratricopeptide repeat protein compare
PFLU_RS28695 -5.0 -4.9 phosphoglycerate dehydrogenase compare
PFLU_RS20575 -5.0 -4.8 3-isopropylmalate dehydratase small subunit compare
PFLU_RS29885 -4.8 -9.8 LysR family transcriptional regulator compare
PFLU_RS02490 -4.8 -8.7 phosphoserine phosphatase SerB compare
PFLU_RS27370 -4.6 -9.8 anthranilate phosphoribosyltransferase compare
PFLU_RS27365 -4.4 -9.5 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS20540 -4.4 -10.3 phosphoribosylanthranilate isomerase compare
PFLU_RS20580 -4.4 -12.4 3-isopropylmalate dehydratase large subunit compare
PFLU_RS29880 -4.3 -13.8 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS02590 -4.3 -7.7 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS20565 -4.3 -13.4 3-isopropylmalate dehydrogenase compare
PFLU_RS29095 -4.3 -28.8 polyphosphate kinase 1 compare
PFLU_RS24765 -4.2 -21.1 2-isopropylmalate synthase compare
PFLU_RS25760 -4.2 -12.0 glucose-6-phosphate isomerase compare
PFLU_RS29875 -4.2 -15.9 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS04470 -4.1 -10.3 histidinol dehydrogenase compare
PFLU_RS28385 -4.1 -13.8 homoserine O-acetyltransferase compare
PFLU_RS12975 -4.1 -5.5 DUF934 domain-containing protein compare
PFLU_RS26545 -4.0 -14.0 sel1 repeat family protein compare
PFLU_RS28535 -4.0 -15.5 dihydroxy-acid dehydratase compare
PFLU_RS04465 -4.0 -10.3 ATP phosphoribosyltransferase compare
PFLU_RS22095 -4.0 -20.8 GTP diphosphokinase compare
PFLU_RS00180 -4.0 -7.6 tryptophan synthase subunit beta compare
PFLU_RS25640 -4.0 -11.9 ketol-acid reductoisomerase compare
PFLU_RS28390 -3.9 -12.2 methionine biosynthesis protein MetW compare
PFLU_RS24125 -3.9 -6.5 cold-shock protein compare
PFLU_RS01620 -3.8 -9.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS28645 -3.8 -18.2 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS01900 -3.8 -7.6 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS00175 -3.7 -6.2 tryptophan synthase subunit alpha compare
PFLU_RS12980 -3.7 -9.2 nitrite/sulfite reductase compare
PFLU_RS22595 -3.7 -2.6 OmpA family protein compare
PFLU_RS20510 -3.7 -14.4 O-succinylhomoserine sulfhydrylase compare
PFLU_RS22740 -3.6 -5.5 phosphoadenylyl-sulfate reductase compare
PFLU_RS18505 -3.6 -10.5 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS25750 -3.5 -6.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS25360 -3.5 -7.7 glutamate 5-kinase compare
PFLU_RS27630 -3.3 -8.0 dethiobiotin synthase compare
PFLU_RS23070 -3.3 -2.1 50S ribosomal protein L32 compare
PFLU_RS01605 -3.3 -10.8 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS09055 -3.3 -2.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS28165 -3.3 -13.1 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS25755 -3.2 -3.8 pantoate--beta-alanine ligase compare
PFLU_RS28655 -3.2 -15.1 HAD family hydrolase compare
PFLU_RS23585 -3.2 -10.6 GntP family permease compare
PFLU_RS25735 -3.2 -8.0 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS27635 -3.1 -11.6 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS02790 -3.1 -2.6 TetR family transcriptional regulator compare
PFLU_RS01625 -3.1 -3.0 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS27640 -3.0 -2.8 alpha/beta fold hydrolase compare
PFLU_RS03970 -2.9 -11.9 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS14550 -2.9 -9.4 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS18530 -2.9 -4.7 DNA translocase FtsK compare
PFLU_RS24330 -2.9 -7.6 phosphogluconate dehydratase compare
PFLU_RS03770 -2.9 -14.6 sulfate adenylyltransferase subunit CysN compare
PFLU_RS22105 -2.8 -6.4 cysteine synthase CysM compare
PFLU_RS23590 -2.8 -3.5 gluconokinase compare
PFLU_RS28965 -2.7 -11.2 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS27650 -2.7 -14.3 biotin synthase BioB compare
PFLU_RS23305 -2.6 -12.0 arginine N-succinyltransferase compare
PFLU_RS23310 -2.6 -10.3 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS20515 -2.6 -4.2 amidophosphoribosyltransferase compare
PFLU_RS22070 -2.5 -6.4 phosphoribosylglycinamide formyltransferase compare
PFLU_RS03765 -2.5 -11.5 sulfate adenylyltransferase subunit CysD compare
PFLU_RS26640 -2.5 -12.0 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS04715 -2.5 -7.4 D-alanine--D-alanine ligase compare
PFLU_RS13540 -2.5 -4.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS04070 -2.4 -6.5 peptide chain release factor 3 compare
PFLU_RS23065 -2.4 -10.9 phosphate acyltransferase PlsX compare
PFLU_RS23725 -2.4 -13.3 glucose-6-phosphate dehydrogenase compare
PFLU_RS29515 -2.4 -10.9 RidA family protein compare
PFLU_RS24485 -2.3 -12.0 hypothetical protein compare
PFLU_RS26595 -2.3 -1.6 lipoprotein compare
PFLU_RS24025 -2.2 -11.4 quinolinate synthase NadA compare
PFLU_RS27645 -2.2 -12.5 8-amino-7-oxononanoate synthase compare
PFLU_RS01895 -2.2 -7.0 phosphoribosyl-ATP diphosphatase compare
PFLU_RS24085 -2.2 -3.8 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS04565 -2.2 -1.8 TMEM165/GDT1 family protein compare
PFLU_RS28195 -2.2 -13.9 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS01960 -2.1 -1.5 ATP-dependent protease ATPase subunit HslU compare
PFLU_RS01610 -2.1 -10.6 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS01965 -2.1 -2.0 ATP-dependent protease subunit HslV compare
PFLU_RS08160 -2.1 -8.8 sugar transferase compare
PFLU_RS09980 -2.0 -15.0 peptidase S41 compare
PFLU_RS08505 -2.0 -7.9 protease HtpX compare
PFLU_RS19665 -2.0 -2.0 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
PFLU_RS24205 -1.9 -1.8 DNA binding protein compare
PFLU_RS01485 -1.9 -12.3 cellulase compare
PFLU_RS25715 -1.9 -9.6 RNA polymerase-binding protein DksA compare
PFLU_RS24335 -1.8 -11.7 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS24090 -1.8 -3.3 Holliday junction branch migration protein RuvA compare
PFLU_RS23920 -1.8 -3.7 septation protein A compare
PFLU_RS20520 -1.8 -8.9 colicin V production protein CvpA compare
PFLU_RS08410 -1.7 -6.6 HTH-type transcriptional regulator CysB compare
PFLU_RS25585 -1.7 -1.6 exodeoxyribonuclease V subunit alpha compare
PFLU_RS02365 -1.7 -10.3 glycosyltransferase compare
PFLU_RS07785 -1.7 -9.8 VacJ family lipoprotein compare
PFLU_RS30160 -1.7 -3.2 ParB/RepB/Spo0J family partition protein compare
PFLU_RS20690 -1.6 -4.0 hypothetical protein compare
PFLU_RS20660 -1.6 -8.0 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS25595 -1.6 -1.5 exodeoxyribonuclease V subunit gamma compare
PFLU_RS05885 -1.6 -5.0 recombinase RecA compare
PFLU_RS21300 -1.6 -5.7 cysteine hydrolase compare
PFLU_RS07275 -1.6 -2.8 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS25740 -1.5 -5.2 polynucleotide adenylyltransferase PcnB compare
PFLU_RS21495 -1.5 -3.4 TlpA family protein disulfide reductase compare
PFLU_RS04325 -1.5 -10.8 ribonuclease G compare
PFLU_RS22030 -1.5 -3.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
PFLU_RS24095 -1.5 -2.5 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS21985 -1.5 -3.8 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS01285 -1.5 -1.4 HAMP domain-containing protein compare
PFLU_RS06055 -1.5 -1.5 chemotaxis response regulator protein-glutamate methylesterase compare
PFLU_RS18670 -1.4 -1.8 NADH-quinone oxidoreductase subunit M compare
PFLU_RS30165 -1.4 -7.0 ParA family protein compare
PFLU_RS07665 -1.4 -1.3 type I DNA topoisomerase compare
PFLU_RS02215 -1.4 -1.9 hypothetical protein compare
PFLU_RS01615 -1.4 -4.0 DUF2164 domain-containing protein compare
PFLU_RS28650 -1.4 -4.9 RNA pyrophosphohydrolase compare
PFLU_RS06555 -1.4 -7.6 OmpA family protein compare
PFLU_RS25815 -1.4 -1.5 transcription termination/antitermination protein NusA compare
PFLU_RS04150 -1.4 -4.2 DUF1043 family protein compare
PFLU_RS05890 -1.4 -1.2 recombination regulator RecX compare
PFLU_RS26735 -1.4 -6.2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS26770 -1.4 -9.2 DedA family protein compare
PFLU_RS00415 -1.4 -2.0 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS07685 -1.4 -3.1 transcriptional repressor LexA compare
PFLU_RS04445 -1.4 -5.4 ABC transporter substrate-binding protein compare
PFLU_RS31290 -1.4 -2.0 EamA family transporter compare
PFLU_RS27380 -1.3 -8.0 anthranilate synthase component I compare
PFLU_RS04440 -1.3 -7.6 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS04430 -1.3 -6.4 ATP-binding cassette domain-containing protein compare
PFLU_RS25225 -1.3 -6.5 disulfide bond formation protein B compare
PFLU_RS18675 -1.3 -2.6 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS25920 -1.3 -2.5 outer membrane protein assembly factor BamE compare
PFLU_RS27620 -1.3 -9.9 acyl-CoA dehydrogenase compare
PFLU_RS05780 -1.3 -7.2 helix-turn-helix transcriptional regulator compare
PFLU_RS24560 -1.3 -6.9 site-specific tyrosine recombinase XerD compare
PFLU_RS08665 -1.2 -1.6 cytochrome c maturation protein CcmE compare
PFLU_RS02970 -1.2 -5.1 bifunctional cobalt-precorrin-7 (C(5))-methyltransferase/cobalt-precorrin-6B (C(15))-methyltransferase compare
PFLU_RS01005 -1.2 -1.6 ABC transporter ATP-binding protein compare
PFLU_RS15410 -1.2 -2.2 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS04660 -1.2 -4.7 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS02130 -1.2 -2.2 glycosyl transferase compare
PFLU_RS25730 -1.2 -9.2 PAS domain S-box protein compare
PFLU_RS29550 -1.2 -5.0 ATP-dependent DNA helicase RecG compare
PFLU_RS07725 -1.2 -3.2 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS28325 -1.2 -5.5 energy transducer TonB compare
PFLU_RS14820 -1.2 -3.8 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS02990 -1.2 -4.8 precorrin-3B C(17)-methyltransferase compare
PFLU_RS04650 -1.2 -9.3 ABC transporter substrate-binding protein compare
PFLU_RS14810 -1.2 -2.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS24825 -1.2 -2.9 Fe-S cluster assembly protein IscX compare
PFLU_RS07255 -1.2 -3.4 sulfurtransferase TusA family protein compare
PFLU_RS20285 -1.1 -5.0 MerR family transcriptional regulator compare
PFLU_RS28725 -1.1 -7.3 DUF2059 domain-containing protein compare
PFLU_RS22010 -1.1 -4.7 threonine-phosphate decarboxylase compare
PFLU_RS18055 -1.1 -1.6 hydrolase compare
PFLU_RS02975 -1.1 -5.6 precorrin-3B synthase compare
PFLU_RS29275 -1.1 -4.0 DUF484 family protein compare
PFLU_RS04220 -1.1 -6.0 FadR family transcriptional regulator compare
PFLU_RS29900 -1.1 -6.8 DNA helicase II compare
PFLU_RS28690 -1.1 -7.4 FAD-binding oxidoreductase compare
PFLU_RS27580 -1.1 -2.2 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
PFLU_RS07225 -1.1 -8.1 L-aspartate oxidase compare
PFLU_RS08370 -1.1 -3.2 hypothetical protein compare
PFLU_RS21645 -1.1 -5.8 chemotaxis protein CheA compare
PFLU_RS02000 -1.1 -9.6 penicillin-binding protein 1A compare
PFLU_RS22455 -1.1 -6.1 hypothetical protein compare
PFLU_RS30645 -1.1 -2.3 type II toxin-antitoxin system HicA family toxin compare
PFLU_RS11980 -1.1 -4.9 precorrin-6A synthase (deacetylating) compare
PFLU_RS19165 -1.0 -3.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS04505 -1.0 -3.5 hypothetical protein compare
PFLU_RS16055 -1.0 -2.7 GntR family transcriptional regulator compare
PFLU_RS13015 -1.0 -3.5 precorrin-4 C(11)-methyltransferase compare
PFLU_RS09305 -1.0 -7.6 hypothetical protein compare
PFLU_RS13035 -1.0 -2.5 cobalamin biosynthesis protein CobW compare
PFLU_RS13000 -1.0 -7.7 methionine synthase compare
PFLU_RS04435 -1.0 -4.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS27440 -1.0 -4.5 nucleotidyltransferase family protein compare
PFLU_RS05385 -1.0 -7.3 glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase compare
PFLU_RS31100 -1.0 -2.9 preprotein translocase subunit SecG compare
PFLU_RS06420 -1.0 -6.2 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
PFLU_RS03980 -1.0 -5.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD compare
PFLU_RS21060 -1.0 -3.4 TetR/AcrR family transcriptional regulator compare
PFLU_RS08165 -1.0 -1.6 acyl carrier protein compare
PFLU_RS29490 -1.0 -4.8 ribonuclease PH compare
PFLU_RS14320 -1.0 -1.6 DUF2946 domain-containing protein compare
PFLU_RS28470 -1.0 -3.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
PFLU_RS04195 -1.0 -2.5 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PFLU_RS01320 -1.0 -5.1 phosphoenolpyruvate carboxykinase compare
PFLU_RS22005 -1.0 -6.3 cobyric acid synthase compare
PFLU_RS13045 -0.9 -3.8 AAA domain-containing protein compare
PFLU_RS23185 -0.9 -6.6 protein-glutamate O-methyltransferase CheR compare
PFLU_RS19170 -0.9 -2.7 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS29065 -0.9 -0.9 amino acid ABC transporter ATP-binding protein compare
PFLU_RS00465 -0.9 -5.6 spore maturation protein compare
PFLU_RS13040 -0.9 -6.9 cobaltochelatase subunit CobN compare
PFLU_RS21360 -0.9 -1.5 MarR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in nitrogen source experiments

For nitrogen source D-Glucose across organisms