Experiment set3IT084 for Methanococcus maripaludis JJ

Compare to:

formate N-free with 10mM Ammonium chloride

200 most important genes:

  gene name fitness t score description  
MMJJ_RS08870 -5.4 -1.7 2-isopropylmalate synthase compare
MMJJ_RS00235 -5.2 -21.0 hypothetical protein compare
MMJJ_RS04200 -4.8 -8.7 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS06910 -4.8 -3.3 energy-converting NiFe hydrogenase A subunit EhaA compare
MMJJ_RS06510 -4.6 -4.5 LL-diaminopimelate aminotransferase compare
MMJJ_RS08250 -4.3 -8.9 hydrogenase maturation peptidase HycI compare
MMJJ_RS05590 -4.3 -3.1 homoserine dehydrogenase compare
MMJJ_RS09175 -4.2 -1.8 anthranilate synthase component I compare
MMJJ_RS06860 -4.1 -5.6 hypothetical protein compare
MMJJ_RS09375 -4.1 -3.0 hypothetical protein compare
MMJJ_RS00275 -4.0 -3.7 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS01415 -3.9 -4.4 beta-CASP ribonuclease aCPSF1 compare
MMJJ_RS04485 -3.9 -10.3 riboflavin synthase compare
MMJJ_RS06490 -3.9 -4.2 methanogenesis marker 2 protein compare
MMJJ_RS05450 -3.9 -18.3 TIGR03576 family pyridoxal phosphate-dependent enzyme compare
MMJJ_RS08080 -3.8 -12.8 TIGR00300 family protein compare
MMJJ_RS03895 -3.7 -5.7 hydrogenase expression/formation protein HypE compare
MMJJ_RS08320 -3.7 -4.3 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS02035 -3.6 -8.6 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS00520 -3.5 -8.7 PDGLE domain-containing protein compare
MMJJ_RS07665 -3.5 -23.9 formate dehydrogenase subunit alpha compare
MMJJ_RS06040 -3.4 -6.4 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS03065 -3.4 -13.4 CBS domain-containing protein compare
MMJJ_RS06875 -3.4 -4.3 hypothetical protein compare
MMJJ_RS03760 -3.3 -5.2 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS00210 -3.3 -3.1 DUF530 family protein compare
MMJJ_RS06695 -3.3 -5.3 amidohydrolase compare
MMJJ_RS06180 -3.2 -4.3 tryptophan--tRNA ligase compare
MMJJ_RS04475 -3.2 -4.7 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS06915 -3.2 -15.9 helix-turn-helix domain-containing protein compare
MMJJ_RS03005 -3.2 -5.6 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS05950 -3.2 -4.8 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS03820 -3.2 -5.6 hydrogenase formation protein HypD compare
MMJJ_RS01935 -3.1 -5.6 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS06625 -3.1 -3.6 pyruvate synthase subunit PorB compare
MMJJ_RS06840 -3.1 -5.4 nickel-dependent hydrogenase large subunit compare
MMJJ_RS03815 -3.1 -3.4 nascent polypeptide-associated complex protein compare
MMJJ_RS07945 -3.1 -4.5 4Fe-4S binding protein compare
MMJJ_RS00570 -3.1 -2.8 ribonuclease P compare
MMJJ_RS08095 -3.1 -5.9 cobyric acid synthase CobQ compare
MMJJ_RS01755 -3.1 -3.6 ferrous iron transport protein B compare
MMJJ_RS08020 -3.1 -10.2 nucleotidyltransferase domain-containing protein compare
MMJJ_RS07670 -3.1 -18.0 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain compare
MMJJ_RS02920 -3.1 -3.2 30S ribosomal protein S27ae compare
MMJJ_RS05575 -3.0 -6.4 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS06805 -3.0 -4.3 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS02090 -3.0 -7.7 tyramine--L-glutamate ligase compare
MMJJ_RS05190 -3.0 -10.0 gamma carbonic anhydrase family protein compare
MMJJ_RS07000 -2.9 -2.8 TrkH family potassium uptake protein compare
MMJJ_RS05535 -2.9 -13.1 hypothetical protein compare
MMJJ_RS03840 -2.8 -5.5 DHH family phosphoesterase compare
MMJJ_RS05610 -2.8 -5.8 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS04790 -2.8 -4.6 biotin--[acetyl-CoA-carboxylase] ligase compare
MMJJ_RS03875 -2.8 -5.5 CBS domain-containing protein compare
MMJJ_RS07655 -2.7 -16.5 hypothetical protein compare
MMJJ_RS06785 -2.7 -11.8 RNA ligase partner protein compare
MMJJ_RS03150 -2.6 -7.3 2-phospho-L-lactate transferase compare
MMJJ_RS05260 -2.6 -7.4 ATP-grasp domain-containing protein compare
MMJJ_RS04685 -2.6 -10.2 carbamoyltransferase HypF compare
MMJJ_RS05065 -2.5 -5.0 (4-{4-[2-(gamma-L- glutamylamino)ethyl]phenoxymethyl}furan-2-yl)methanamine synthase compare
MMJJ_RS04995 -2.5 -7.6 Tfx family DNA-binding protein compare
MMJJ_RS05620 -2.5 -6.0 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS08660 -2.5 -4.5 acetylornithine transaminase compare
MMJJ_RS06730 -2.5 -9.0 ATP-binding cassette domain-containing protein compare
MMJJ_RS03055 -2.5 -4.4 hypothetical protein compare
MMJJ_RS01565 -2.4 -7.0 TIGR00267 family protein compare
MMJJ_RS05445 -2.4 -3.2 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS08330 -2.4 -4.1 SufD family Fe-S cluster assembly protein compare
MMJJ_RS00475 -2.4 -2.4 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS04730 -2.4 -4.1 tyrosine decarboxylase MfnA compare
MMJJ_RS08005 -2.4 -15.1 formate dehydrogenase accessory sulfurtransferase FdhD compare
MMJJ_RS00060 -2.4 -16.9 acetyl-CoA decarbonylase/synthase complex subunit gamma compare
MMJJ_RS04155 -2.4 -7.3 hypothetical protein compare
MMJJ_RS08065 -2.4 -2.8 precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT compare
MMJJ_RS08840 -2.4 -5.3 calcium/sodium antiporter compare
MMJJ_RS03580 -2.4 -3.5 TIGR00303 family protein compare
MMJJ_RS00040 -2.4 -9.3 CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon compare
MMJJ_RS06855 -2.4 -1.6 DUF2104 domain-containing protein compare
MMJJ_RS06835 -2.4 -12.2 4Fe-4S binding protein compare
MMJJ_RS07660 -2.4 -11.1 carbonic anhydrase compare
MMJJ_RS00050 -2.3 -11.7 AAA family ATPase compare
MMJJ_RS01750 -2.3 -2.8 ferrous iron transport protein A compare
MMJJ_RS08625 -2.3 -8.8 magnesium/cobalt transporter CorA compare
MMJJ_RS03620 -2.3 -6.2 DUF2097 domain-containing protein compare
MMJJ_RS08000 -2.3 -10.8 HesA/MoeB/ThiF family protein compare
MMJJ_RS00055 -2.3 -9.3 CO dehydrogenase/acetyl-CoA synthase subunit delta compare
MMJJ_RS05490 -2.3 -3.0 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS06930 -2.3 -3.5 type II methionyl aminopeptidase compare
MMJJ_RS09190 -2.3 -2.7 tryptophan synthase subunit beta compare
MMJJ_RS06725 -2.3 -12.8 MogA/MoaB family molybdenum cofactor biosynthesis protein compare
MMJJ_RS06250 -2.3 -2.9 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS05655 -2.3 -7.3 HisA/HisF family protein compare
MMJJ_RS02200 -2.3 -10.1 chorismate pyruvate-lyase family protein compare
MMJJ_RS06255 -2.3 -7.8 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS08585 -2.2 -11.1 M42 family metallopeptidase compare
MMJJ_RS02045 -2.2 -3.7 molybdenum cofactor guanylyltransferase compare
MMJJ_RS08055 -2.2 -7.3 methanogenesis marker 14 protein compare
MMJJ_RS00935 -2.2 -14.1 nickel pincer cofactor biosynthesis protein LarB compare
MMJJ_RS00530 -2.2 -13.4 cobalt ECF transporter T component CbiQ compare
MMJJ_RS04110 -2.2 -6.8 hypothetical protein compare
MMJJ_RS04655 -2.2 -6.4 FAD-dependent oxidoreductase compare
MMJJ_RS00075 -2.2 -10.6 AAA family ATPase compare
MMJJ_RS05360 -2.2 -7.4 nickel-responsive transcriptional regulator NikR compare
MMJJ_RS03110 -2.2 -4.8 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS08855 -2.2 -4.1 cyclic pyranopterin monophosphate synthase MoaC compare
MMJJ_RS00035 -2.2 -14.5 CO dehydrogenase/acetyl-CoA synthase complex subunit alpha compare
MMJJ_RS00270 -2.2 -4.5 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS07155 -2.2 -10.0 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS07950 -2.2 -3.4 4Fe-4S binding protein compare
MMJJ_RS00070 -2.1 -3.9 CooT family nickel-binding protein compare
MMJJ_RS05650 -2.1 -3.5 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS03785 -2.1 -2.8 hypothetical protein compare
MMJJ_RS03920 -2.1 -13.7 nickel pincer cofactor biosynthesis protein LarC compare
MMJJ_RS00450 -2.1 -2.2 DUF126 domain-containing protein compare
MMJJ_RS00065 -2.1 -12.0 4Fe-4S dicluster domain-containing protein compare
MMJJ_RS07640 -2.1 -17.5 cache domain-containing protein compare
MMJJ_RS03190 -2.1 -3.6 phosphopyruvate hydratase compare
MMJJ_RS05070 -2.1 -2.4 DNA primase catalytic subunit PriS compare
MMJJ_RS00560 -2.1 -5.2 homoisocitrate dehydrogenase compare
MMJJ_RS06485 -2.1 -4.3 phosphoglycerate kinase compare
MMJJ_RS07430 -2.1 -4.7 ribonuclease VapC compare
MMJJ_RS03295 -2.1 -14.0 PHP domain-containing protein compare
MMJJ_RS07380 -2.1 -8.3 sulfide-dependent adenosine diphosphate thiazole synthase compare
MMJJ_RS05330 -2.1 -3.3 DNA polymerase II large subunit compare
MMJJ_RS03830 -2.1 -10.0 CBS domain-containing protein compare
MMJJ_RS07995 -2.1 -8.4 molybdenum cofactor biosynthesis protein MoaE compare
MMJJ_RS04675 -2.1 -5.3 thiamine pyrophosphate-binding protein compare
MMJJ_RS03060 -2.1 -2.6 methanogenesis marker 7 protein compare
MMJJ_RS00045 -2.0 -11.9 CO dehydrogenase/CO-methylating acetyl-CoA synthase complex subunit beta compare
MMJJ_RS06185 -2.0 -5.7 cobalamin biosynthesis protein compare
MMJJ_RS01345 -2.0 -4.4 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS03630 -2.0 -12.3 AMP phosphorylase compare
MMJJ_RS04050 -2.0 -2.3 dihydroneopterin aldolase family protein compare
MMJJ_RS04010 -2.0 -8.3 archaeal proteasome endopeptidase complex subunit alpha compare
MMJJ_RS07705 -2.0 -4.4 GTP-binding protein EngB compare
MMJJ_RS05930 -2.0 -2.0 cell division protein SepF compare
MMJJ_RS04620 -2.0 -2.6 homocitrate synthase family protein compare
MMJJ_RS00515 -2.0 -10.6 cobalt transporter CbiM compare
MMJJ_RS01865 -2.0 -5.7 peptidyl-tRNA hydrolase Pth2 compare
MMJJ_RS04520 -2.0 -5.2 coenzyme F430 synthase compare
MMJJ_RS07785 -2.0 -3.0 fumarate reductase subunit A compare
MMJJ_RS02275 -1.9 -4.2 nucleotidyltransferase domain-containing protein compare
MMJJ_RS07650 -1.9 -14.6 formate/nitrite transporter family protein compare
MMJJ_RS07975 -1.9 -10.8 ATP-dependent sacrificial sulfur transferase LarE compare
MMJJ_RS03615 -1.9 -3.1 cobalt-precorrin-8 methylmutase compare
MMJJ_RS07410 -1.9 -2.9 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS00580 -1.9 -2.5 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS07635 -1.9 -11.2 response regulator transcription factor compare
MMJJ_RS06050 -1.9 -9.5 molybdopterin molybdotransferase MoeA compare
MMJJ_RS08480 -1.9 -9.5 hydroxyethylthiazole kinase compare
MMJJ_RS05720 -1.9 -3.3 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
MMJJ_RS00080 -1.9 -10.8 DUF166 domain-containing protein compare
MMJJ_RS04800 -1.9 -7.4 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS04875 -1.9 -2.1 tRNA-Lys compare
MMJJ_RS08340 -1.8 -4.3 archaeoflavoprotein AfpA compare
MMJJ_RS08155 -1.8 -3.4 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS00205 -1.8 -5.3 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS00195 -1.8 -4.6 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS03660 -1.8 -3.0 DUF447 family protein compare
MMJJ_RS00600 -1.8 -2.6 hydroxymethylbilane synthase compare
MMJJ_RS00265 -1.8 -8.4 TIGR02253 family HAD-type hydrolase compare
MMJJ_RS07170 -1.8 -4.5 pyridoxal phosphate-dependent aminotransferase compare
MMJJ_RS06750 -1.8 -2.9 homoaconitase large subunit compare
MMJJ_RS06270 -1.8 -8.1 dethiobiotin synthase compare
MMJJ_RS06905 -1.8 -2.0 hypothetical protein compare
MMJJ_RS06155 -1.8 -4.2 phosphatidylglycerophosphatase A compare
MMJJ_RS05810 -1.8 -5.6 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS06010 -1.8 -6.7 hypothetical protein compare
MMJJ_RS05375 -1.7 -12.9 radical SAM protein compare
MMJJ_RS03670 -1.7 -4.3 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS06240 -1.7 -2.8 dihydropteroate synthase-like protein compare
MMJJ_RS08430 -1.7 -6.3 small nuclear ribonucleoprotein compare
MMJJ_RS00345 -1.7 -9.4 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS01690 -1.7 -2.8 methanogenesis marker 12 protein compare
MMJJ_RS04970 -1.7 -2.6 DUF655 domain-containing protein compare
MMJJ_RS00645 -1.7 -11.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS02055 -1.7 -11.2 GTP 3',8-cyclase MoaA compare
MMJJ_RS07980 -1.7 -10.0 biotin synthase BioB compare
MMJJ_RS05595 -1.7 -3.2 hypothetical protein compare
MMJJ_RS07345 -1.7 -5.6 homocysteine biosynthesis protein compare
MMJJ_RS06700 -1.6 -3.3 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS03125 -1.6 -3.8 GMC oxidoreductase compare
MMJJ_RS07275 -1.6 -3.1 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS05415 -1.6 -2.0 hypothetical protein compare
MMJJ_RS05995 -1.6 -3.0 ATP-binding cassette domain-containing protein compare
MMJJ_RS07245 -1.6 -4.1 amidohydrolase family protein compare
MMJJ_RS07190 -1.6 -4.3 RtcB family protein compare
MMJJ_RS00370 -1.6 -2.0 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS03115 -1.6 -4.4 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS00355 -1.6 -3.4 ribonuclease P protein component 4 compare
MMJJ_RS05225 -1.6 -2.0 Gar1/Naf1 family protein compare
MMJJ_RS05295 -1.6 -7.8 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS08620 -1.6 -3.2 DUF373 family protein compare
MMJJ_RS06865 -1.5 -2.0 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS02040 -1.5 -1.4 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS04865 -1.5 -10.1 4Fe-4S binding protein compare
MMJJ_RS08535 -1.5 -3.8 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS09100 -1.5 -9.2 COG1361 S-layer family protein compare
MMJJ_RS04975 -1.5 -1.8 glycosyltransferase family 4 protein compare
MMJJ_RS07470 -1.5 -2.0 50S ribosome-binding GTPase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms