Experiment set3IT084 for Methanococcus maripaludis JJ

Compare to:

formate N-free with 10mM Ammonium chloride

200 most detrimental genes:

  gene name fitness t score description  
MMJJ_RS04415 +2.7 11.4 hypothetical protein compare
MMJJ_RS08130 +0.8 1.0 translation initiation factor IF-2 subunit gamma compare
MMJJ_RS04005 +0.8 6.5 acetate--CoA ligase family protein compare
MMJJ_RS03360 +0.6 1.3 hypothetical protein compare
MMJJ_RS07415 +0.6 1.4 polyprenyl diphosphate synthase compare
MMJJ_RS06540 +0.5 2.1 DUF2120 domain-containing protein compare
MMJJ_RS01670 +0.5 2.2 hypothetical protein compare
MMJJ_RS05685 +0.5 2.7 class III signal peptide-containing protein compare
MMJJ_RS04105 +0.5 3.9 prepilin peptidase compare
MMJJ_RS06680 +0.5 2.4 DUF366 family protein compare
MMJJ_RS07920 +0.4 3.2 6-carboxytetrahydropterin synthase QueD compare
MMJJ_RS03905 +0.4 2.6 ATP-binding cassette domain-containing protein compare
MMJJ_RS06500 +0.4 3.0 class I SAM-dependent methyltransferase compare
MMJJ_RS06675 +0.4 3.1 TIGR01212 family radical SAM protein compare
MMJJ_RS02295 +0.4 3.4 hypothetical protein compare
MMJJ_RS08410 +0.4 1.5 CBS domain-containing protein compare
MMJJ_RS01070 +0.4 0.8 PadR family transcriptional regulator compare
MMJJ_RS08100 +0.4 2.4 hypothetical protein compare
MMJJ_RS05915 +0.4 1.3 multiprotein bridging factor aMBF1 compare
MMJJ_RS07915 +0.4 2.1 CBS domain-containing protein compare
MMJJ_RS05175 +0.4 2.4 CBS domain-containing protein compare
MMJJ_RS05525 +0.4 2.1 GTP-binding protein compare
MMJJ_RS07795 +0.3 2.1 cupin domain-containing protein compare
MMJJ_RS06440 +0.3 2.4 DUF4870 domain-containing protein compare
MMJJ_RS05975 +0.3 2.4 sulfurtransferase TusA family protein compare
MMJJ_RS01435 +0.3 2.6 4Fe-4S binding protein compare
MMJJ_RS06085 +0.3 1.8 proteasome assembly chaperone family protein compare
MMJJ_RS06505 +0.3 1.3 prephenate dehydratase compare
MMJJ_RS08225 +0.3 1.2 peptidylprolyl isomerase compare
MMJJ_RS04215 +0.3 2.7 DMT family transporter compare
MMJJ_RS07025 +0.3 2.1 tRNA (cytidine(56)-2'-O)-methyltransferase compare
MMJJ_RS00745 +0.3 1.0 hypothetical protein compare
MMJJ_RS01430 +0.3 2.0 hypothetical protein compare
MMJJ_RS03725 +0.3 1.1 sulfurtransferase TusA family protein compare
MMJJ_RS07240 +0.3 2.7 MBL fold metallo-hydrolase compare
MMJJ_RS05980 +0.3 2.1 DUF5400 domain-containing protein compare
MMJJ_RS05040 +0.3 2.3 7-carboxy-7-deazaguanine synthase QueE compare
MMJJ_RS08520 +0.3 1.1 peptidylprolyl isomerase compare
MMJJ_RS06460 +0.3 2.1 cytochrome c compare
MMJJ_RS07230 +0.3 2.0 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS07985 +0.3 1.6 hypothetical protein compare
MMJJ_RS08830 +0.3 1.1 hypothetical protein compare
MMJJ_RS05530 +0.3 1.4 roadblock/LC7 domain-containing protein compare
MMJJ_RS07205 +0.3 1.7 MTH895/ArsE family thioredoxin-like protein compare
MMJJ_RS01825 +0.3 1.4 DNA repair and recombination protein RadB compare
MMJJ_RS06210 +0.3 1.9 hypothetical protein compare
MMJJ_RS07225 +0.3 1.9 coenzyme F420 hydrogenase subunit gamma compare
MMJJ_RS00585 +0.3 2.4 S-layer protein compare
MMJJ_RS07495 +0.3 2.1 4Fe-4S binding protein compare
MMJJ_RS03720 +0.3 2.2 DsrE family protein compare
MMJJ_RS01395 +0.3 1.1 DUF1894 domain-containing protein compare
MMJJ_RS01530 +0.3 1.0 YwbE family protein compare
MMJJ_RS08295 +0.3 2.4 iron ABC transporter substrate-binding protein compare
MMJJ_RS07220 +0.3 2.3 coenzyme F420 hydrogenase subunit beta compare
MMJJ_RS04955 +0.3 1.8 tRNA pseudouridine(54/55) synthase Pus10 compare
MMJJ_RS07210 +0.3 2.2 AmmeMemoRadiSam system protein B compare
MMJJ_RS00335 +0.3 1.3 chemotaxis protein CheW compare
MMJJ_RS04350 +0.3 1.4 hypothetical protein compare
MMJJ_RS06535 +0.3 2.1 UPF0104 family protein compare
MMJJ_RS03250 +0.3 0.8 DUF2116 family Zn-ribbon domain-containing protein compare
MMJJ_RS07260 +0.3 1.9 PspC domain-containing protein compare
MMJJ_RS06190 +0.3 1.8 7-cyano-7-deazaguanine synthase compare
MMJJ_RS07235 +0.3 2.1 coenzyme F420 hydrogenase subunit alpha compare
MMJJ_RS04545 +0.2 1.0 PadR family transcriptional regulator compare
MMJJ_RS07765 +0.2 1.2 DMT family protein compare
MMJJ_RS01855 +0.2 1.9 MBL fold metallo-hydrolase compare
MMJJ_RS02665 +0.2 0.6 methyl-accepting chemotaxis protein compare
MMJJ_RS04135 +0.2 1.1 7-cyano-7-deazaguanine synthase QueC compare
MMJJ_RS06275 +0.2 0.9 hypothetical protein compare
MMJJ_RS06515 +0.2 1.9 ribonuclease III compare
MMJJ_RS07815 +0.2 1.8 2-oxoacid:acceptor oxidoreductase family protein compare
MMJJ_RS07010 +0.2 1.5 preprotein translocase subunit Sec61beta compare
MMJJ_RS03375 +0.2 1.3 hypothetical protein compare
MMJJ_RS06735 +0.2 1.8 cobalt ECF transporter T component CbiQ compare
MMJJ_RS06045 +0.2 1.5 hypothetical protein compare
MMJJ_RS04235 +0.2 1.5 molybdate ABC transporter permease subunit compare
MMJJ_RS03575 +0.2 1.4 NUDIX hydrolase compare
MMJJ_RS08285 +0.2 1.8 class I SAM-dependent methyltransferase compare
MMJJ_RS05390 +0.2 1.8 tRNA pseudouridine(13) synthase TruD compare
MMJJ_RS08490 +0.2 1.1 rubrerythrin family protein compare
MMJJ_RS06770 +0.2 1.9 hypothetical protein compare
MMJJ_RS06950 +0.2 1.7 4-demethylwyosine synthase TYW1 compare
MMJJ_RS01590 +0.2 0.6 adenine phosphoribosyltransferase compare
MMJJ_RS07480 +0.2 1.8 FAD-dependent oxidoreductase compare
MMJJ_RS01510 +0.2 1.7 ATP-binding protein compare
MMJJ_RS03040 +0.2 1.6 lactate utilization protein compare
MMJJ_RS03605 +0.2 1.1 TIGR00297 family protein compare
MMJJ_RS06455 +0.2 1.7 YeeE/YedE family protein compare
MMJJ_RS07820 +0.2 1.7 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator compare
MMJJ_RS06205 +0.2 1.6 EamA family transporter compare
MMJJ_RS00500 +0.2 1.0 GNAT family N-acetyltransferase compare
MMJJ_RS00155 +0.2 1.8 DUF2193 domain-containing protein compare
MMJJ_RS00630 +0.2 1.4 betaine/proline/choline family ABC transporter ATP-binding protein compare
MMJJ_RS09385 +0.2 1.3 class III signal peptide-containing protein compare
MMJJ_RS00145 +0.2 1.6 aquaporin family protein compare
MMJJ_RS03835 +0.2 0.9 DUF504 domain-containing protein compare
MMJJ_RS04635 +0.2 1.3 DUF367 family protein compare
MMJJ_RS05970 +0.2 0.7 MJ0307 family thioredoxin compare
MMJJ_RS06960 +0.2 1.9 CAP domain-containing protein compare
MMJJ_RS06520 +0.2 1.5 TldD/PmbA family protein compare
MMJJ_RS06685 +0.2 1.8 S-layer protein compare
MMJJ_RS01970 +0.2 1.1 hypothetical protein compare
MMJJ_RS03515 +0.2 1.5 GPR1/FUN34/YaaH family transporter compare
MMJJ_RS03805 +0.2 0.7 hypothetical protein compare
MMJJ_RS05700 +0.2 1.6 metallophosphoesterase compare
MMJJ_RS06120 +0.2 1.4 DUF4013 domain-containing protein compare
MMJJ_RS05410 +0.2 1.2 RecB-family nuclease compare
MMJJ_RS05605 +0.2 0.7 hypothetical protein compare
MMJJ_RS08735 +0.2 1.7 hypothetical protein compare
MMJJ_RS05750 +0.2 1.4 flagellar accessory protein FlaH compare
MMJJ_RS04830 +0.2 1.3 zinc dependent phospholipase C family protein compare
MMJJ_RS06280 +0.2 1.6 hypothetical protein compare
MMJJ_RS02270 +0.2 0.9 HEPN domain-containing protein compare
MMJJ_RS03285 +0.2 1.1 gamma-glutamylcyclotransferase compare
MMJJ_RS05580 +0.2 1.1 methanogenesis marker 9 domain-containing protein compare
MMJJ_RS06810 +0.2 1.4 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha compare
MMJJ_RS06580 +0.2 1.4 alanine dehydrogenase compare
MMJJ_RS08630 +0.2 1.2 signal recognition particle subunit SRP19/SEC65 family protein compare
MMJJ_RS06080 +0.2 1.3 serine/threonine protein kinase compare
MMJJ_RS01055 +0.2 0.6 hypothetical protein compare
MMJJ_RS01385 +0.2 1.4 PadR family transcriptional regulator compare
MMJJ_RS07810 +0.2 1.3 3-methyl-2-oxobutanoate dehydrogenase subunit VorB compare
MMJJ_RS05520 +0.2 1.4 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein compare
MMJJ_RS08935 +0.2 0.2 TIGR00288 family NYN domain-containing protein compare
MMJJ_RS08305 +0.2 1.0 peroxiredoxin compare
MMJJ_RS07610 +0.2 0.9 DUF2119 domain-containing protein compare
MMJJ_RS01010 +0.2 1.7 right-handed parallel beta-helix repeat-containing protein compare
MMJJ_RS07175 +0.2 1.5 DEAD/DEAH box helicase compare
MMJJ_RS01985 +0.2 1.3 endonuclease III compare
MMJJ_RS09390 +0.2 0.5 hypothetical protein compare
MMJJ_RS05335 +0.2 1.0 heavy metal-binding domain-containing protein compare
MMJJ_RS07680 +0.2 1.2 glucose-6-phosphate isomerase compare
MMJJ_RS05690 +0.2 1.6 hypothetical protein compare
MMJJ_RS08375 +0.2 1.3 ferritin compare
MMJJ_RS07440 +0.2 1.3 metallophosphoesterase compare
MMJJ_RS07835 +0.2 1.1 UPF0489 family protein compare
MMJJ_RS06100 +0.2 1.1 rubrerythrin compare
MMJJ_RS08485 +0.2 0.8 Lrp/AsnC family transcriptional regulator compare
MMJJ_RS02240 +0.2 0.9 CGGC domain-containing protein compare
MMJJ_RS04850 +0.2 0.8 energy-coupling factor transporter transmembrane protein EcfT compare
MMJJ_RS06470 +0.2 1.2 tripartite tricarboxylate transporter permease compare
MMJJ_RS03290 +0.2 1.3 amidohydrolase compare
MMJJ_RS05400 +0.2 0.6 CoA-binding protein compare
MMJJ_RS01745 +0.2 0.9 metal-dependent transcriptional regulator compare
MMJJ_RS00640 +0.2 1.2 glycine betaine ABC transporter substrate-binding protein compare
MMJJ_RS09325 +0.2 0.8 hypothetical protein compare
MMJJ_RS05500 +0.2 1.4 hypothetical protein compare
MMJJ_RS06090 +0.2 0.9 hypothetical protein compare
MMJJ_RS04825 +0.2 1.3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
MMJJ_RS04225 +0.2 1.2 aldo/keto reductase compare
MMJJ_RS06790 +0.2 1.3 nucleotidyltransferase family protein compare
MMJJ_RS06765 +0.2 1.3 hypothetical protein compare
MMJJ_RS04295 +0.2 1.3 DUF2202 domain-containing protein compare
MMJJ_RS04500 +0.1 1.0 hypothetical protein compare
MMJJ_RS00980 +0.1 1.0 flavodoxin family protein compare
MMJJ_RS04420 +0.1 1.2 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family compare
MMJJ_RS04920 +0.1 1.1 CBS domain-containing protein compare
MMJJ_RS05105 +0.1 0.9 P-II family nitrogen regulator compare
MMJJ_RS04345 +0.1 0.7 DUF2080 family transposase-associated protein compare
MMJJ_RS06075 +0.1 1.0 DNA-binding protein Alba compare
MMJJ_RS03850 +0.1 0.8 nucleoside-diphosphate kinase compare
MMJJ_RS04430 +0.1 1.2 purine NTPase compare
MMJJ_RS05505 +0.1 1.4 hypothetical protein compare
MMJJ_RS06465 +0.1 1.0 hypothetical protein compare
MMJJ_RS04390 +0.1 1.2 rhomboid family intramembrane serine protease compare
MMJJ_RS01845 +0.1 1.2 acetolactate decarboxylase compare
MMJJ_RS07890 +0.1 0.8 pyrimidine dimer DNA glycosylase/endonuclease V compare
MMJJ_RS03330 +0.1 0.9 hypothetical protein compare
MMJJ_RS07445 +0.1 1.0 RlmF-related methyltransferase compare
MMJJ_RS06975 +0.1 0.7 protein translocase SEC61 complex subunit gamma compare
MMJJ_RS01480 +0.1 1.1 ECF transporter S component compare
MMJJ_RS06590 +0.1 1.2 sodium:alanine symporter family protein compare
MMJJ_RS01945 +0.1 0.9 cell division ATPase MinD compare
MMJJ_RS09015 +0.1 1.0 SPFH domain-containing protein compare
MMJJ_RS02265 +0.1 1.0 hypothetical protein compare
MMJJ_RS02365 +0.1 0.7 DUF2540 domain-containing protein compare
MMJJ_RS05870 +0.1 0.6 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
MMJJ_RS02230 +0.1 1.1 hypothetical protein compare
MMJJ_RS04450 +0.1 0.8 diphthamide biosynthesis enzyme Dph2 compare
MMJJ_RS04715 +0.1 0.7 hypothetical protein compare
MMJJ_RS04580 +0.1 1.1 2-phosphosulfolactate phosphatase compare
MMJJ_RS06710 +0.1 1.1 TldD/PmbA family protein compare
MMJJ_RS00025 +0.1 0.9 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
MMJJ_RS08880 +0.1 0.7 IMPACT family protein compare
MMJJ_RS01715 +0.1 0.8 winged helix-turn-helix domain-containing protein compare
MMJJ_RS07800 +0.1 1.1 AMP-binding protein compare
MMJJ_RS07200 +0.1 1.1 MFS transporter compare
MMJJ_RS00680 +0.1 1.1 nitrogenase iron-molybdenum cofactor biosynthesis protein NifE compare
MMJJ_RS08455 +0.1 0.5 tetratricopeptide repeat protein compare
MMJJ_RS08380 +0.1 0.2 hypothetical protein compare
MMJJ_RS03045 +0.1 0.9 hypothetical protein compare
MMJJ_RS05510 +0.1 1.0 archaellum operon transcriptional activator EarA family protein compare
MMJJ_RS09365 +0.1 0.4 hypothetical protein compare
MMJJ_RS07280 +0.1 0.8 phosphomannomutase/phosphoglucomutase compare
MMJJ_RS07740 +0.1 0.9 DUF2334 domain-containing protein compare
MMJJ_RS01465 +0.1 0.7 METTL5 family protein compare
MMJJ_RS03220 +0.1 1.0 inosine/xanthosine triphosphatase compare
MMJJ_RS09295 +0.1 0.2 hypothetical protein compare
MMJJ_RS09360 +0.1 0.9 hypothetical protein compare
MMJJ_RS06235 +0.1 1.0 IGHMBP2 family helicase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nitrogen source experiments

For nitrogen source Ammonium chloride across organisms