Experiment set3IT083 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Spectinomycin dihydrochloride pentahydrate 0.15 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_26835 -4.4 -3.0 transcriptional regulator compare
AO353_08170 -4.1 -3.9 hypothetical protein compare
AO353_26845 -3.8 -11.4 acriflavine resistance protein B compare
AO353_04565 -3.8 -2.6 nucleoid-associated protein compare
AO353_22685 -3.4 -4.7 peroxidase compare
AO353_11750 -3.4 -2.3 ATPase compare
AO353_13160 -3.3 -2.3 membrane protease HflC compare
AO353_17290 -3.2 -6.7 multidrug transporter compare
AO353_09315 -3.1 -11.6 LysR family transcriptional regulator compare
AO353_00515 -3.0 -4.4 hypothetical protein compare
AO353_04035 -3.0 -5.2 exclusion suppressor FxsA compare
AO353_07315 -2.8 -2.7 rRNA methyltransferase compare
AO353_13155 -2.8 -3.3 hypothetical protein compare
AO353_26840 -2.7 -4.4 RND transporter compare
AO353_04190 -2.7 -2.6 glycerol-3-phosphate dehydrogenase compare
AO353_09915 -2.6 -8.9 long-chain acyl-CoA thioester hydrolase compare
AO353_08885 -2.6 -15.3 polyphosphate kinase compare
AO353_03360 -2.5 -8.2 glucose-6-phosphate dehydrogenase compare
AO353_09890 -2.5 -5.3 phosphate ABC transporter ATP-binding protein compare
AO353_06415 -2.5 -5.5 hypothetical protein compare
AO353_03715 -2.5 -2.9 H-NS histone compare
AO353_00495 -2.5 -3.3 DNA topoisomerase I compare
AO353_14150 -2.5 -2.3 peptidylprolyl isomerase compare
AO353_03585 -2.4 -4.3 ATP-dependent DNA helicase RuvA compare
AO353_23725 -2.4 -6.0 hypothetical protein compare
AO353_10930 -2.4 -8.6 DNA polymerase I compare
AO353_09950 -2.4 -5.4 aspartate ammonia-lyase compare
AO353_08350 -2.3 -8.4 hypothetical protein compare
AO353_14220 -2.3 -2.0 ribosomal large subunit pseudouridine synthase D compare
AO353_09250 -2.3 -3.1 exodeoxyribonuclease III compare
AO353_20200 -2.3 -4.8 peptidylprolyl isomerase compare
AO353_13220 -2.3 -7.3 hypothetical protein compare
AO353_04490 -2.3 -10.4 murein transglycosylase compare
AO353_10065 -2.2 -8.9 hypothetical protein compare
AO353_02570 -2.2 -4.3 hypothetical protein compare
AO353_09320 -2.2 -9.2 ATP-dependent DNA helicase RecG compare
AO353_23735 -2.1 -8.2 AAA family ATPase compare
AO353_02710 -2.1 -11.0 (p)ppGpp synthetase compare
AO353_10985 -2.1 -3.1 hypothetical protein compare
AO353_06455 -2.0 -3.0 D-alanyl-D-alanine carboxypeptidase compare
AO353_27695 -2.0 -8.1 isocitrate dehydrogenase compare
AO353_27710 -1.9 -2.7 DNA repair protein compare
AO353_16495 -1.9 -6.2 zinc metallopeptidase RseP compare
AO353_11165 -1.9 -9.3 hypothetical protein compare
AO353_20185 -1.9 -6.3 DNA-binding protein compare
AO353_00825 -1.9 -4.6 porin compare
AO353_11730 -1.9 -8.9 glutamate--cysteine ligase compare
AO353_26945 -1.9 -2.7 transcriptional regulator compare
AO353_02685 -1.9 -4.6 phosphoribosylglycinamide formyltransferase compare
AO353_16440 -1.8 -3.5 ArsC family transcriptional regulator compare
AO353_23720 -1.8 -4.5 BatB protein compare
AO353_12145 -1.8 -4.7 nitrogen regulation protein NR(I) compare
AO353_03420 -1.8 -5.3 phosphogluconate dehydratase compare
AO353_03590 -1.8 -3.9 crossover junction endodeoxyribonuclease RuvC compare
AO353_15905 -1.8 -6.5 outer membrane protein assembly factor BamB compare
AO353_12115 -1.7 -2.8 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_15900 -1.7 -2.5 GTP-binding protein compare
AO353_23715 -1.7 -6.5 hypothetical protein compare
AO353_09060 -1.7 -3.2 hypothetical protein compare
AO353_02995 -1.7 -6.9 succinylglutamate desuccinylase compare
AO353_14370 -1.7 -6.6 glucose-6-phosphate isomerase compare
AO353_16040 -1.7 -3.1 hypothetical protein compare
AO353_03710 -1.7 -2.7 formyltetrahydrofolate deformylase compare
AO353_03615 -1.6 -3.5 cold-shock protein compare
AO353_00510 -1.6 -4.8 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_02250 -1.6 -3.5 chorismate synthase compare
AO353_09905 -1.6 -8.0 phosphate-binding protein compare
AO353_08110 -1.6 -6.0 glutathione synthetase compare
AO353_15555 -1.6 -4.0 fumarylacetoacetase compare
AO353_12460 -1.6 -7.2 malate dehydrogenase compare
AO353_13225 -1.6 -3.3 50S ribosomal protein L9 compare
AO353_09050 -1.6 -3.8 recombinase XerC compare
AO353_16805 -1.6 -5.4 recombinase RecA compare
AO353_03775 -1.5 -7.4 pyruvate kinase compare
AO353_09275 -1.5 -3.1 DNA-directed RNA polymerase subunit omega compare
AO353_15290 -1.5 -6.7 methyltransferase compare
AO353_27650 -1.5 -4.4 cell division protein FtsK compare
AO353_26220 -1.5 -3.3 hypothetical protein compare
AO353_17295 -1.5 -10.3 multidrug transporter compare
AO353_09240 -1.5 -3.4 acetylglutamate kinase compare
AO353_03795 -1.5 -4.1 fumarate hydratase compare
AO353_18780 -1.5 -6.1 cobyrinic acid a,c-diamide synthase compare
AO353_13720 -1.5 -10.2 arginine decarboxylase compare
AO353_23730 -1.5 -2.9 hypothetical protein compare
AO353_03595 -1.4 -3.2 hypothetical protein compare
AO353_23710 -1.4 -3.8 protein BatD compare
AO353_20175 -1.4 -3.0 ATP-dependent Clp protease proteolytic subunit compare
AO353_28110 -1.4 -3.9 TetR family transcriptional regulator compare
AO353_12535 -1.4 -3.3 hypothetical protein compare
AO353_03580 -1.4 -3.4 ATP-dependent DNA helicase RuvB compare
AO353_25505 -1.4 -7.6 4-amino-4-deoxy-L-arabinose transferase compare
AO353_12015 -1.4 -2.2 antitoxin compare
AO353_07610 -1.4 -1.8 hypothetical protein compare
AO353_10320 -1.3 -1.9 hypothetical protein compare
AO353_22785 -1.3 -4.8 peptidase compare
AO353_27215 -1.3 -2.8 hypothetical protein compare
AO353_03545 -1.3 -6.1 hypothetical protein compare
AO353_20565 -1.3 -1.9 tRNA-Ala compare
AO353_22655 -1.3 -5.8 hypothetical protein compare
AO353_09900 -1.3 -7.8 phosphate ABC transporter permease compare
AO353_19360 -1.2 -2.4 peroxiredoxin compare
AO353_12665 -1.2 -1.9 glycosyl transferase compare
AO353_01915 -1.2 -1.9 GlcG protein compare
AO353_10780 -1.2 -1.7 DNA-binding protein compare
AO353_15185 -1.2 -4.0 ATPase compare
AO353_23620 -1.2 -2.6 hypothetical protein compare
AO353_08265 -1.2 -4.5 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
AO353_06040 -1.2 -2.9 exodeoxyribonuclease V subunit alpha compare
AO353_00860 -1.2 -3.5 EstX protein compare
AO353_25550 -1.2 -4.8 4-amino-4-deoxy-L-arabinose transferase compare
AO353_02810 -1.2 -5.8 histidine kinase compare
AO353_07495 -1.2 -8.8 acyl-CoA dehydrogenase compare
AO353_02940 -1.2 -2.4 DNA-binding protein compare
AO353_10895 -1.2 -3.7 hypothetical protein compare
AO353_19015 -1.1 -7.9 hypothetical protein compare
AO353_12110 -1.1 -6.0 peptidase M23 compare
AO353_22800 -1.1 -2.4 sulfite reductase compare
AO353_10805 -1.1 -3.0 hypothetical protein compare
AO353_21935 -1.1 -1.9 nitrite reductase compare
AO353_14975 -1.1 -4.0 hypothetical protein compare
AO353_26520 -1.1 -2.8 TetR family transcriptional regulator compare
AO353_25530 -1.1 -3.7 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase compare
AO353_09260 -1.1 -4.9 ribonuclease PH compare
AO353_06050 -1.1 -4.7 exodeoxyribonuclease V subunit gamma compare
AO353_04325 -1.1 -1.3 hypothetical protein compare
AO353_06045 -1.1 -4.9 exodeoxyribonuclease V subunit beta compare
AO353_21640 -1.1 -2.0 cobalt transporter compare
AO353_03250 -1.0 -1.0 gluconokinase compare
AO353_08560 -1.0 -4.4 spermidine/putrescine ABC transporter permease compare
AO353_15260 -1.0 -3.8 stringent starvation protein A compare
AO353_13150 -1.0 -4.7 GTPase HflX compare
AO353_08100 -1.0 -2.6 chemotaxis protein CheY compare
AO353_25015 -1.0 -2.7 polyketide cyclase compare
AO353_00195 -1.0 -1.8 virion morphogenesis protein compare
AO353_20800 -1.0 -1.5 hypothetical protein compare
AO353_17645 -1.0 -6.5 peptidase M48 compare
AO353_18170 -1.0 -5.1 aspartyl beta-hydroxylase compare
AO353_02480 -1.0 -5.3 peptidylprolyl isomerase compare
AO353_15875 -1.0 -3.7 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO353_17300 -1.0 -3.7 antibiotic transporter compare
AO353_12650 -1.0 -1.2 hypothetical protein compare
AO353_04355 -1.0 -1.5 homoserine dehydrogenase compare
AO353_02280 -1.0 -1.1 DNA mismatch repair protein MutS compare
AO353_16940 -1.0 -3.9 deoxycytidine triphosphate deaminase compare
AO353_02885 -1.0 -2.0 flagellar biosynthesis protein FlgN compare
AO353_28425 -1.0 -2.7 TetR family transcriptional regulator compare
AO353_15725 -1.0 -2.7 hypothetical protein compare
AO353_17885 -1.0 -1.5 hypothetical protein compare
AO353_17410 -1.0 -2.0 arylsulfate sulfotransferase compare
AO353_00750 -1.0 -2.8 GntR family transcriptional regulator compare
AO353_10055 -1.0 -6.6 DNA helicase II compare
AO353_15485 -1.0 -3.7 phosphate-starvation-inducible protein PsiE compare
AO353_25990 -1.0 -4.3 aspartyl beta-hydroxylase compare
AO353_11770 -1.0 -1.7 molecular chaperone Hsp33 compare
AO353_03290 -1.0 -1.3 peptide deformylase compare
AO353_21355 -1.0 -2.4 xylose isomerase compare
AO353_21425 -1.0 -2.3 hypothetical protein compare
AO353_09885 -1.0 -1.4 transcriptional regulator PhoU compare
AO353_00460 -1.0 -2.4 TetR family transcriptional regulator compare
AO353_21380 -1.0 -4.0 rhizopine-binding protein compare
AO353_11780 -1.0 -2.1 hypothetical protein compare
AO353_11695 -1.0 -2.5 hypothetical protein compare
AO353_02765 -0.9 -1.8 NAD(P)H-quinone oxidoreductase compare
AO353_19300 -0.9 -3.3 exonuclease compare
AO353_29145 -0.9 -3.0 HxlR family transcriptional regulator compare
AO353_03370 -0.9 -3.0 aldose epimerase compare
AO353_10775 -0.9 -6.8 oligopeptidase A compare
AO353_25660 -0.9 -3.3 ABC transporter substrate-binding protein compare
AO353_00430 -0.9 -2.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_17750 -0.9 -2.1 transcriptional regulator compare
AO353_00505 -0.9 -3.2 3-ketoacyl-CoA thiolase compare
AO353_09895 -0.9 -4.2 phosphate ABC transporter permease compare
AO353_13200 -0.9 -5.4 exoribonuclease R compare
AO353_07075 -0.9 -2.8 elongation factor Tu compare
AO353_08455 -0.9 -4.4 hypothetical protein compare
AO353_03430 -0.9 -1.6 methylglyoxal synthase compare
AO353_09040 -0.8 -1.3 diaminopimelate epimerase compare
AO353_11915 -0.8 -4.2 agmatine deiminase compare
AO353_18480 -0.8 -6.2 potassium transporter TrkH compare
AO353_06720 -0.8 -1.4 NrdR family transcriptional regulator compare
AO353_03815 -0.8 -1.0 heme utilization protein compare
AO353_08020 -0.8 -4.4 hypothetical protein compare
AO353_10625 -0.8 -6.2 potassium transporter peripheral membrane component compare
AO353_13685 -0.8 -2.8 3-dehydroquinate dehydratase compare
AO353_03945 -0.8 -1.9 hypothetical protein compare
AO353_29325 -0.8 -4.8 GntR family transcriptional regulator compare
AO353_13515 -0.8 -2.5 Urease (EC 3.5.1.5) (from data) compare
AO353_17675 -0.8 -2.8 hypothetical protein compare
AO353_13040 -0.8 -4.1 esterase compare
AO353_20925 -0.8 -1.7 hypothetical protein compare
AO353_15730 -0.8 -1.7 hypothetical protein compare
AO353_22930 -0.8 -2.1 hypothetical protein compare
AO353_23880 -0.8 -2.1 ATPase compare
AO353_07155 -0.8 -3.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_29005 -0.8 -1.7 hypothetical protein compare
AO353_13705 -0.8 -4.3 hypothetical protein compare
AO353_23615 -0.8 -3.5 peptidase S54 compare
AO353_25570 -0.8 -4.6 glycosyltransferase compare
AO353_00310 -0.8 -4.5 transaldolase compare
AO353_09065 -0.8 -3.2 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress Spectinomycin dihydrochloride pentahydrate in Pseudomonas fluorescens FW300-N2E3

For stress Spectinomycin dihydrochloride pentahydrate across organisms