Experiment set3IT083 for Shewanella loihica PV-4

Compare to:

LB

200 most detrimental genes:

  gene name fitness t score description  
Shew_0296 +3.1 6.1 heat shock protein Hsp20 (RefSeq) compare
Shew_2049 +2.7 12.2 DNA-binding transcriptional regulator HexR (RefSeq) compare
Shew_1601 +2.7 7.7 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_2572 +2.4 12.4 enoyl-CoA hydratase/isomerase (RefSeq) compare
Shew_1058 +2.4 9.5 holo-acyl-carrier-protein synthase (RefSeq) compare
Shew_1298 guaA +2.2 16.7 bifunctional GMP synthase/glutamine amidotransferase protein (RefSeq) compare
Shew_3487 pyrE +2.2 16.3 orotate phosphoribosyltransferase (RefSeq) compare
Shew_0755 +2.1 9.2 fructose-1,6-bisphosphate aldolase (RefSeq) compare
Shew_1423 +2.1 2.6 sulfate adenylyltransferase, large subunit (RefSeq) compare
Shew_1013 +2.0 19.3 aspartate carbamoyltransferase (RefSeq) compare
Shew_1341 +2.0 9.7 anti-sigma-28 factor, FlgM (RefSeq) compare
Shew_1602 +2.0 7.9 malonyl CoA-acyl carrier protein transacylase (RefSeq) compare
Shew_0728 +2.0 17.1 dihydroorotase (RefSeq) compare
Shew_2174 +1.9 4.3 fatty acid metabolism regulator (RefSeq) compare
Shew_2906 +1.9 5.2 hypothetical protein (RefSeq) compare
Shew_0383 +1.9 12.1 malate dehydrogenase (RefSeq) compare
Shew_1563 +1.9 11.8 isocitrate dehydrogenase, NADP-dependent (RefSeq) compare
Shew_1810 +1.7 9.7 dihydroorotate dehydrogenase 2 (RefSeq) compare
Shew_2642 +1.6 5.6 flavodoxin (RefSeq) compare
Shew_3681 +1.6 12.1 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_1224 +1.6 11.9 sodium:dicarboxylate symporter (RefSeq) compare
Shew_3682 +1.6 13.2 two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) compare
Shew_1713 +1.6 2.6 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq) compare
Shew_1819 +1.5 4.9 GntR family transcriptional regulator (RefSeq) compare
Shew_3660 +1.5 12.6 glutathione reductase (RefSeq) compare
Shew_1714 +1.5 3.6 alpha/beta hydrolase fold (RefSeq) compare
Shew_2000 +1.5 3.2 glyceraldehyde-3-phosphate dehydrogenase (RefSeq) compare
Shew_2839 +1.4 13.7 carbamoyl phosphate synthase small subunit (RefSeq) compare
Shew_2668 +1.4 6.2 2-nitropropane dioxygenase, NPD (RefSeq) compare
Shew_3410 +1.4 10.5 permease (RefSeq) compare
Shew_0421 +1.4 1.6 phage shock protein C, PspC (RefSeq) compare
Shew_1202 +1.4 6.4 (p)ppGpp synthetase I, SpoT/RelA (RefSeq) compare
Shew_2838 carB +1.4 9.7 carbamoyl phosphate synthase large subunit (RefSeq) compare
Shew_2409 +1.4 2.7 short chain dehydrogenase (RefSeq) compare
Shew_3708 +1.4 8.3 TetR family transcriptional regulator (RefSeq) compare
Shew_1500 +1.3 1.5 signal transduction protein (RefSeq) compare
Shew_2667 +1.3 10.1 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (RefSeq) compare
Shew_2666 +1.2 9.8 omega-3 polyunsaturated fatty acid synthase PfaB (RefSeq) compare
Shew_2665 +1.2 10.1 beta-ketoacyl synthase (RefSeq) compare
Shew_3499 +1.2 6.1 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (RefSeq) compare
Shew_1186 +1.2 4.0 transcriptional regulator NrdR (RefSeq) compare
Shew_1606 +1.2 1.2 hypothetical protein (RefSeq) compare
Shew_2664 +1.2 6.6 transcriptional regulator, putative (RefSeq) compare
Shew_3710 tdh +1.1 8.2 L-threonine 3-dehydrogenase (RefSeq) compare
Shew_0534 +1.1 4.2 major facilitator transporter (RefSeq) compare
Shew_2573 +1.1 6.7 carbamoyl-phosphate synthase L chain, ATP-binding (RefSeq) compare
Shew_0261 +1.1 1.2 hypothetical protein (RefSeq) compare
Shew_1865 +1.1 6.6 phosphoenolpyruvate-protein phosphotransferase (RefSeq) compare
Shew_3709 +1.1 6.4 2-amino-3-ketobutyrate coenzyme A ligase (RefSeq) compare
Shew_0316 +1.1 3.8 protein of unknown function DUF513, hemX (RefSeq) compare
Shew_0024 +1.1 1.4 ArsR family transcriptional regulator (RefSeq) compare
Shew_1769 +1.1 1.6 NapD family protein (RefSeq) compare
Shew_1092 +1.1 7.7 amino acid carrier protein (RefSeq) compare
Shew_2105 +1.0 1.1 methylated-DNA-(protein)-cysteine S-methyltransferase (RefSeq) compare
Shew_2558 +1.0 4.4 1,4-dihydroxy-2-naphthoate octaprenyltransferase (RefSeq) compare
Shew_1867 +1.0 4.1 hypothetical protein (RefSeq) compare
Shew_0827 +1.0 1.6 peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq) compare
Shew_1577 +1.0 1.1 aminotransferase, class IV (RefSeq) compare
Shew_0763 +1.0 6.6 putative PAS/PAC sensor protein (RefSeq) compare
Shew_1078 +1.0 6.3 peptidylprolyl isomerase, FKBP-type (RefSeq) compare
Shew_3716 +1.0 5.3 cytochrome c, class I (RefSeq) compare
Shew_3273 +1.0 4.6 hypothetical protein (RefSeq) compare
Shew_2571 +1.0 6.7 propionyl-CoA carboxylase (RefSeq) compare
Shew_2416 +1.0 1.4 chorismate synthase (RefSeq) compare
Shew_2320 +1.0 6.3 RNA methyltransferase (RefSeq) compare
Shew_0799 +0.9 2.7 MarR family transcriptional regulator (RefSeq) compare
Shew_0127 +0.9 5.0 LexA repressor (RefSeq) compare
Shew_3176 +0.9 1.4 regulatory protein GntR, HTH (RefSeq) compare
Shew_3225 +0.9 5.8 glutathione synthetase (RefSeq) compare
Shew_3775 +0.9 2.0 thioesterase superfamily protein (RefSeq) compare
Shew_3377 +0.9 1.2 twin-arginine translocation protein, TatB subunit (RefSeq) compare
Shew_3500 +0.9 2.6 putative endoribonuclease L-PSP (RefSeq) compare
Shew_1427 +0.9 1.4 3'(2'),5'-bisphosphate nucleotidase (RefSeq) compare
Shew_1667 +0.9 2.1 acetyl-CoA acetyltransferase (RefSeq) compare
Shew_2544 +0.9 1.8 phosphoglucomutase/phosphomannomutase alpha/beta/subunit (RefSeq) compare
Shew_2806 +0.9 1.6 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_2656 +0.9 4.9 4'-phosphopantetheinyl transferase (RefSeq) compare
Shew_1227 +0.9 2.0 glutamate--cysteine ligase (RefSeq) compare
Shew_1471 +0.8 2.1 hypothetical protein (RefSeq) compare
Shew_3295 +0.8 2.6 AFG1 family ATPase (RefSeq) compare
Shew_3189 +0.8 4.5 hypothetical protein (RefSeq) compare
Shew_0698 +0.8 3.8 Na+/H+ antiporter NhaC (RefSeq) compare
Shew_1156 +0.8 1.8 hypothetical protein (RefSeq) compare
Shew_1050 +0.8 4.7 sigma E regulatory protein, MucB/RseB (RefSeq) compare
Shew_0121 +0.8 1.1 hypothetical protein (RefSeq) compare
Shew_3247 +0.8 0.8 hypothetical protein (RefSeq) compare
Shew_3442 +0.8 1.6 hypothetical protein (RefSeq) compare
Shew_1073 +0.8 1.0 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) compare
Shew_3522 +0.8 1.8 hypothetical protein (RefSeq) compare
Shew_3432 pdhR +0.8 2.3 transcriptional regulator PdhR (RefSeq) compare
Shew_1437 +0.8 4.8 transcriptional regulator, TyrR (RefSeq) compare
Shew_2222 +0.8 0.9 hypothetical protein (RefSeq) compare
Shew_0364 +0.8 1.6 MshA, mannose-sensitive haemaglutinin (RefSeq) compare
Shew_3513 +0.8 1.7 hypothetical protein (RefSeq) compare
Shew_1820 prpB +0.8 3.8 2-methylisocitrate lyase (RefSeq) compare
Shew_1812 +0.8 4.9 23S rRNA m(2)G2445 methyltransferase (RefSeq) compare
Shew_3271 +0.8 4.0 galactokinase (RefSeq) compare
Shew_2837 +0.8 1.0 transcription elongation factor GreA (RefSeq) compare
Shew_2646 +0.8 0.9 hypothetical protein (RefSeq) compare
Shew_1230 +0.8 2.8 phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq) compare
Shew_2022 +0.7 0.7 recombination factor protein RarA (RefSeq) compare
Shew_2895 +0.7 3.4 2-dehydropantoate 2-reductase (RefSeq) compare
Shew_2061 +0.7 1.7 radical SAM domain-containing protein (RefSeq) compare
Shew_2171 +0.7 2.0 peptidase T2, asparaginase 2 (RefSeq) compare
Shew_1445 +0.7 0.7 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), small permease component (from data) compare
Shew_3063 +0.7 1.2 glycine cleavage system protein H (RefSeq) compare
Shew_2389 +0.7 2.2 hypothetical protein (RefSeq) compare
Shew_1920 +0.7 3.0 alpha/beta hydrolase fold (RefSeq) compare
Shew_2907 +0.7 1.3 invasion gene expression up-regulator, SirB (RefSeq) compare
Shew_0854 +0.7 2.0 hypothetical protein (RefSeq) compare
Shew_3814 +0.7 5.2 naphthoate synthase (RefSeq) compare
Shew_3336 +0.7 1.0 MarR family transcriptional regulator (RefSeq) compare
Shew_3049 +0.7 1.4 major facilitator transporter (RefSeq) compare
Shew_1657 sucC +0.7 1.1 succinyl-CoA synthetase subunit beta (RefSeq) compare
Shew_2918 +0.7 0.7 hypothetical protein (RefSeq) compare
Shew_0098 +0.7 4.9 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_0256 +0.7 1.3 hypothetical protein (RefSeq) compare
Shew_2228 +0.7 4.3 inosine kinase (RefSeq) compare
Shew_1133 +0.7 2.4 hypothetical protein (RefSeq) compare
Shew_2355 +0.7 1.5 hypothetical protein (RefSeq) compare
Shew_2453 +0.7 1.1 hypothetical protein (RefSeq) compare
Shew_1883 +0.7 0.7 hypothetical protein (RefSeq) compare
Shew_1444 +0.6 1.7 dicarboxylate TRAP transporter (succinate, fumarate, L-malate, and alpha-ketoglutarate), large permease component (from data) compare
Shew_0086 +0.6 5.4 electron-transferring-flavoproteindehydrogenase (RefSeq) compare
Shew_3267 +0.6 2.8 sodium/hydrogen exchanger (RefSeq) compare
Shew_3718 +0.6 1.3 hypothetical protein (RefSeq) compare
Shew_1809 +0.6 5.4 NAD-glutamate dehydrogenase (RefSeq) compare
Shew_1128 +0.6 1.3 LysR family transcriptional regulator (RefSeq) compare
Shew_0450 +0.6 3.2 1-acyl-sn-glycerol-3-phosphate acyltransferase (RefSeq) compare
Shew_2584 +0.6 3.0 electron transfer flavoprotein beta-subunit (RefSeq) compare
Shew_1146 +0.6 2.1 hypothetical protein (RefSeq) compare
Shew_2458 +0.6 0.7 glutathione S-transferase domain-containing protein (RefSeq) compare
Shew_3537 +0.6 1.3 hypothetical protein (RefSeq) compare
Shew_3601 +0.6 3.9 O-succinylbenzoate synthase (RefSeq) compare
Shew_0091 +0.6 2.3 molybdopterin biosynthesis MoaE (RefSeq) compare
Shew_2882 +0.6 2.1 S-ribosylhomocysteinase (RefSeq) compare
Shew_1365 +0.6 0.8 flagellar hook-basal body complex subunit FliE (RefSeq) compare
Shew_0494 +0.6 2.0 hypothetical protein (RefSeq) compare
Shew_2795 +0.6 3.5 xanthine/uracil/vitamin C permease (RefSeq) compare
Shew_3126 +0.6 1.5 2'-5' RNA ligase (RefSeq) compare
Shew_2059 +0.6 2.7 hypothetical protein (RefSeq) compare
Shew_0373 +0.6 1.9 hypothetical protein (RefSeq) compare
Shew_2290 +0.6 2.9 hypothetical protein (RefSeq) compare
Shew_2349 +0.6 2.0 integral membrane sensor signal transduction histidine kinase (RefSeq) compare
Shew_1393 +0.6 1.2 FlhB domain-containing protein (RefSeq) compare
Shew_0022 +0.6 3.9 TrkH family potassium uptake protein (RefSeq) compare
Shew_3224 +0.6 2.3 hypothetical protein (RefSeq) compare
Shew_0615 +0.6 3.4 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (RefSeq) compare
Shew_1518 +0.6 1.0 hypothetical protein (RefSeq) compare
Shew_1287 +0.6 2.6 hypothetical protein (RefSeq) compare
Shew_3488 +0.6 1.3 ribonuclease PH (RefSeq) compare
Shew_3262 +0.5 0.6 hypothetical protein (RefSeq) compare
Shew_1429 +0.5 1.5 hypothetical protein (RefSeq) compare
Shew_3602 +0.5 3.8 O-succinylbenzoate-CoA ligase (RefSeq) compare
Shew_3498 rpoZ +0.5 2.1 DNA-directed RNA polymerase subunit omega (RefSeq) compare
Shew_1823 +0.5 1.8 putative AcnD-accessory protein PrpF (RefSeq) compare
Shew_3664 +0.5 4.8 alpha-L-glutamate ligase (RefSeq) compare
Shew_2026 +0.5 1.6 alanine dehydrogenase (RefSeq) compare
Shew_1295 +0.5 1.2 hypothetical protein (RefSeq) compare
Shew_2565 +0.5 0.9 hypothetical protein (RefSeq) compare
Shew_0412 +0.5 2.5 secretion protein HlyD family protein (RefSeq) compare
Shew_1845 +0.5 1.2 lysine exporter protein LysE/YggA (RefSeq) compare
Shew_1781 +0.5 0.9 hypothetical protein (RefSeq) compare
Shew_2400 +0.5 2.7 hypothetical protein (RefSeq) compare
Shew_3268 +0.5 1.2 hypothetical protein (RefSeq) compare
Shew_3431 aceE +0.5 4.2 pyruvate dehydrogenase subunit E1 (RefSeq) compare
Shew_1711 +0.5 1.1 methyl-accepting chemotaxis protein (RefSeq) compare
Shew_2883 +0.5 1.0 BolA family protein (RefSeq) compare
Shew_3054 +0.5 0.9 hypothetical protein (RefSeq) compare
Shew_1548 +0.5 1.6 hypothetical protein (RefSeq) compare
Shew_0885 djlA +0.5 0.8 DNA-J like membrane chaperone protein (RefSeq) compare
Shew_2589 +0.5 1.6 hypothetical protein (RefSeq) compare
Shew_2598 +0.5 1.5 hypothetical protein (RefSeq) compare
Shew_2570 +0.5 4.1 acyl-CoA dehydrogenase domain-containing protein (RefSeq) compare
Shew_0485 +0.5 1.0 cold-shock DNA-binding domain-containing protein (RefSeq) compare
Shew_1304 +0.5 0.7 cyd operon protein YbgT (RefSeq) compare
Shew_3599 +0.5 3.6 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase (RefSeq) compare
Shew_2202 +0.5 0.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (RefSeq) compare
Shew_3517 +0.5 3.7 histidine ammonia-lyase (RefSeq) compare
Shew_1792 +0.5 1.6 OmpA/MotB domain-containing protein (RefSeq) compare
Shew_3600 +0.5 2.0 alpha/beta hydrolase fold (RefSeq) compare
Shew_1231 +0.5 1.0 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) compare
Shew_1855 +0.5 1.3 hypothetical protein (RefSeq) compare
Shew_1114 +0.5 1.0 SapC family protein (RefSeq) compare
Shew_3520 +0.5 3.5 hypothetical protein (RefSeq) compare
Shew_1906 +0.5 1.4 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_0762 +0.5 1.0 hypothetical protein (RefSeq) compare
Shew_0575 +0.5 0.7 glutamine amidotransferase of anthranilate synthase (RefSeq) compare
Shew_3799 +0.5 1.2 hypothetical protein (RefSeq) compare
Shew_1016 +0.5 3.2 hypothetical protein (RefSeq) compare
Shew_1531 grxA +0.5 1.1 glutaredoxin 1 (RefSeq) compare
Shew_2006 +0.5 1.8 GCN5-related N-acetyltransferase (RefSeq) compare
Shew_2090 +0.5 1.0 methyl-accepting chemotaxis protein (RefSeq) compare
Shew_2086 +0.5 0.9 hypothetical protein (RefSeq) compare
Shew_0206 +0.5 3.4 argininosuccinate lyase (RefSeq) compare
Shew_1067 +0.5 2.3 phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq) compare
Shew_1649 +0.5 1.2 RND family efflux transporter MFP subunit (RefSeq) compare
Shew_2725 +0.5 1.3 ribokinase-like domain-containing protein (RefSeq) compare
Shew_2556 +0.5 1.7 acyl-CoA thioesterase II (RefSeq) compare
Shew_2039 +0.5 3.0 GCN5-related N-acetyltransferase (RefSeq) compare


Specific Phenotypes

None in this experiment

For Shewanella loihica PV-4 in lb experiments