Experiment set3IT083 for Dyella japonica UNC79MFTsu3.2

Compare to:

L-Lysine nitrogen source

200 most important genes:

  gene name fitness t score description  
ABZR86_RS08250 -6.4 -4.4 phosphate signaling complex protein PhoU compare
ABZR86_RS06275 -5.6 -3.7 DUF6165 family protein compare
ABZR86_RS21335 -4.7 -1.8 response regulator transcription factor compare
ABZR86_RS19865 -4.7 -4.5 phosphoribosylformylglycinamidine cyclo-ligase compare
ABZR86_RS06270 -4.5 -7.6 glycosyltransferase family 9 protein compare
ABZR86_RS12885 -4.3 -3.0 magnesium-translocating P-type ATPase compare
ABZR86_RS09885 -4.2 -2.9 trypsin-like peptidase domain-containing protein compare
ABZR86_RS12410 -3.8 -2.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABZR86_RS10215 -3.7 -5.9 inositol monophosphatase family protein compare
ABZR86_RS13920 -3.7 -12.2 CDP-glycerol glycerophosphotransferase family protein compare
ABZR86_RS18360 -3.5 -12.3 response regulator transcription factor compare
ABZR86_RS08000 -3.4 -14.2 tryptophan synthase subunit beta compare
ABZR86_RS07180 -3.3 -8.5 RNA polymerase sigma factor RpoE compare
ABZR86_RS18655 -3.3 -9.1 transketolase compare
ABZR86_RS06580 -3.3 -3.5 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR86_RS05550 -3.2 -5.3 lipopolysaccharide assembly protein LapB compare
ABZR86_RS13915 -3.2 -10.0 glycosyltransferase family 2 protein compare
ABZR86_RS02230 -3.1 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR86_RS09845 -3.1 -11.3 DUF1631 domain-containing protein compare
ABZR86_RS14100 -3.0 -6.9 DNA adenine methylase compare
ABZR86_RS17180 -2.9 -7.9 glycosyltransferase compare
ABZR86_RS09635 -2.9 -2.2 phosphoglycerate dehydrogenase compare
ABZR86_RS19725 -2.9 -12.4 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR86_RS06630 -2.8 -2.3 phosphopyruvate hydratase compare
ABZR86_RS15460 -2.8 -2.4 type I glutamate--ammonia ligase compare
ABZR86_RS12065 -2.7 -6.5 indole-3-glycerol phosphate synthase TrpC compare
ABZR86_RS12070 -2.6 -6.4 anthranilate phosphoribosyltransferase compare
ABZR86_RS18675 -2.6 -6.1 phosphoglycerate kinase compare
ABZR86_RS10475 -2.6 -5.8 shikimate kinase compare
ABZR86_RS02220 -2.6 -11.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR86_RS15990 -2.5 -2.3 hypothetical protein compare
ABZR86_RS14690 -2.5 -5.1 phosphogluconate dehydratase compare
ABZR86_RS21575 -2.4 -6.0 [protein-PII] uridylyltransferase compare
ABZR86_RS08715 -2.4 -9.1 arginosuccinate synthetase (EC 6.3.4.5) (from data) compare
ABZR86_RS12005 -2.4 -2.1 ribose-5-phosphate isomerase RpiA compare
ABZR86_RS13905 -2.3 -8.1 glycosyltransferase family 1 protein compare
ABZR86_RS06730 -2.3 -4.5 histidinol dehydrogenase compare
ABZR86_RS13515 -2.3 -3.9 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
ABZR86_RS15695 -2.3 -1.6 23S ribosomal RNA compare
ABZR86_RS07995 -2.3 -7.0 tryptophan synthase subunit alpha compare
ABZR86_RS18365 -2.2 -12.0 ATP-binding protein compare
ABZR86_RS02815 -2.2 -12.7 asparagine synthase B compare
ABZR86_RS11655 -2.2 -5.2 SLC13 family permease compare
ABZR86_RS06000 -2.2 -5.8 poly(R)-hydroxyalkanoic acid synthase subunit PhaE compare
ABZR86_RS08010 -2.2 -6.1 phosphoribosylanthranilate isomerase compare
ABZR86_RS18780 -2.2 -2.6 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR86_RS18450 -2.2 -3.9 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha compare
ABZR86_RS19025 -2.2 -2.4 homoserine O-succinyltransferase compare
ABZR86_RS08705 -2.1 -7.6 N-acetylglutamate synthase; N-acetylglutamate kinase (EC 2.3.1.1; EC 2.7.2.8) (from data) compare
ABZR86_RS06720 -2.1 -3.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
ABZR86_RS18715 -2.1 -6.0 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase compare
ABZR86_RS15950 -2.1 -5.9 3-isopropylmalate dehydrogenase compare
ABZR86_RS15940 -2.1 -9.3 ketol-acid reductoisomerase compare
ABZR86_RS08710 -2.1 -7.1 N-acetylcitrulline deacetylase (EC 3.5.1.-) (from data) compare
ABZR86_RS15980 -2.1 -4.1 homoserine kinase (EC 2.7.1.39) (from data) compare
ABZR86_RS15315 -2.1 -10.8 phenylalanine 4-monooxygenase compare
ABZR86_RS17085 -2.1 -7.0 type II 3-dehydroquinate dehydratase compare
ABZR86_RS06700 -2.0 -3.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
ABZR86_RS14985 -2.0 -7.7 shikimate dehydrogenase compare
ABZR86_RS06590 -2.0 -2.5 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABZR86_RS06585 -2.0 -3.2 YqaA family protein compare
ABZR86_RS13910 -2.0 -10.4 glycosyltransferase compare
ABZR86_RS08695 -2.0 -6.1 arginosuccinate lyase (EC 4.3.2.1) (from data) compare
ABZR86_RS10830 -2.0 -1.8 Holliday junction branch migration DNA helicase RuvB compare
ABZR86_RS09605 -2.0 -8.6 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS06725 -2.0 -5.9 histidinol-phosphate transaminase compare
ABZR86_RS10715 -2.0 -9.7 serine hydroxymethyltransferase compare
ABZR86_RS08730 -1.9 -6.0 N-acetylornithine carbamoyltransferase compare
ABZR86_RS05995 -1.9 -10.7 class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC compare
ABZR86_RS15985 -1.9 -7.0 homoserine dehydrogenase compare
ABZR86_RS08040 -1.9 -5.2 chorismate synthase compare
ABZR86_RS08460 -1.9 -4.7 hypothetical protein compare
ABZR86_RS08680 -1.9 -7.1 glutamate-5-semialdehyde dehydrogenase compare
ABZR86_RS18585 -1.9 -6.3 polysaccharide biosynthesis/export family protein compare
ABZR86_RS08685 -1.9 -5.9 glutamate 5-kinase compare
ABZR86_RS15975 -1.9 -7.0 threonine synthase (EC 4.2.3.1) (from data) compare
ABZR86_RS01565 -1.9 -2.1 hypothetical protein compare
ABZR86_RS13850 -1.9 -5.1 phosphoribosylamine--glycine ligase compare
ABZR86_RS12435 -1.8 -7.4 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme compare
ABZR86_RS14700 -1.8 -4.1 glucose-6-phosphate dehydrogenase compare
ABZR86_RS06260 -1.8 -3.2 MBL fold metallo-hydrolase compare
ABZR86_RS17065 -1.8 -3.2 50S ribosomal protein L11 methyltransferase compare
ABZR86_RS15955 -1.8 -4.9 3-isopropylmalate dehydratase small subunit compare
ABZR86_RS15960 -1.7 -7.8 3-isopropylmalate dehydratase large subunit compare
ABZR86_RS19800 -1.7 -8.0 RNase adapter RapZ compare
ABZR86_RS18615 -1.7 -2.5 type I glyceraldehyde-3-phosphate dehydrogenase compare
ABZR86_RS15935 -1.7 -8.3 biosynthetic-type acetolactate synthase large subunit compare
ABZR86_RS18830 -1.7 -4.1 electron transfer flavoprotein-ubiquinone oxidoreductase compare
ABZR86_RS06735 -1.7 -4.0 ATP phosphoribosyltransferase compare
ABZR86_RS03975 -1.7 -2.2 class I SAM-dependent methyltransferase compare
ABZR86_RS15020 -1.7 -1.7 DUF484 family protein compare
ABZR86_RS05875 -1.7 -2.7 cysteine synthase A compare
ABZR86_RS06775 -1.7 -9.2 amidophosphoribosyltransferase compare
ABZR86_RS18490 -1.7 -2.8 low molecular weight protein-tyrosine-phosphatase compare
ABZR86_RS12215 -1.6 -2.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABZR86_RS15965 -1.6 -5.8 branched-chain amino acid transaminase compare
ABZR86_RS10480 -1.6 -1.8 3-dehydroquinate synthase compare
ABZR86_RS12960 -1.6 -1.8 hypothetical protein compare
ABZR86_RS18140 -1.6 -1.7 hypothetical protein compare
ABZR86_RS00685 -1.5 -1.7 carbon storage regulator CsrA compare
ABZR86_RS05910 -1.5 -3.4 cupin domain-containing protein compare
ABZR86_RS08340 -1.5 -3.6 adenylosuccinate synthase compare
ABZR86_RS11555 -1.5 -8.5 phosphoenolpyruvate carboxylase compare
ABZR86_RS06740 -1.5 -2.2 YerC/YecD family TrpR-related protein compare
ABZR86_RS15970 -1.5 -5.4 2-isopropylmalate synthase compare
ABZR86_RS15945 -1.5 -3.2 dihydroxy-acid dehydratase compare
ABZR86_RS19030 -1.5 -4.1 cystathionine gamma-synthase compare
ABZR86_RS19860 -1.5 -6.8 phosphoribosylglycinamide formyltransferase compare
ABZR86_RS13900 -1.4 -2.4 glycosyltransferase compare
ABZR86_RS12180 -1.4 -9.6 anthranilate synthase component I compare
ABZR86_RS05545 -1.4 -5.8 glycosyltransferase family 4 protein compare
ABZR86_RS10205 -1.4 -4.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
ABZR86_RS13880 -1.4 -1.8 peptide deformylase compare
ABZR86_RS13055 -1.4 -4.8 glucokinase compare
ABZR86_RS11570 -1.4 -7.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR86_RS05785 -1.3 -1.4 hypothetical protein compare
ABZR86_RS20775 -1.3 -4.2 TetR/AcrR family transcriptional regulator compare
ABZR86_RS08700 -1.3 -3.4 N-acetylglutamylphosphate reductase (EC 1.2.1.38) (from data) compare
ABZR86_RS00390 -1.3 -5.1 3-deoxy-7-phosphoheptulonate synthase compare
ABZR86_RS15640 -1.2 -1.7 orotate phosphoribosyltransferase compare
ABZR86_RS18465 -1.2 -2.5 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR86_RS00310 -1.2 -2.0 AraC family transcriptional regulator compare
ABZR86_RS02225 -1.2 -4.4 prephenate dehydratase compare
ABZR86_RS18545 -1.2 -5.9 hypothetical protein compare
ABZR86_RS09145 -1.2 -1.6 hypothetical protein compare
ABZR86_RS06715 -1.2 -2.9 imidazole glycerol phosphate synthase subunit HisH compare
ABZR86_RS05700 -1.2 -2.7 SsrA-binding protein SmpB compare
ABZR86_RS09660 -1.2 -2.2 MerR family transcriptional regulator compare
ABZR86_RS19235 -1.2 -2.0 phosphoribosylformylglycinamidine synthase compare
ABZR86_RS10945 -1.2 -5.2 trehalose-phosphatase compare
ABZR86_RS15515 -1.1 -2.8 nitrogen regulation protein NR(I) compare
ABZR86_RS05885 -1.1 -5.7 LysR substrate-binding domain-containing protein compare
ABZR86_RS09075 -1.1 -1.0 NrsF family protein compare
ABZR86_RS06705 -1.1 -2.8 imidazole glycerol phosphate synthase subunit HisF compare
ABZR86_RS08480 -1.1 -2.3 methylisocitrate lyase compare
ABZR86_RS17560 -1.1 -5.7 NrdJb compare
ABZR86_RS00285 -1.0 -1.7 hypothetical protein compare
ABZR86_RS02545 -1.0 -2.4 Ref family recombination enhancement nuclease compare
ABZR86_RS06710 -1.0 -3.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABZR86_RS11845 -1.0 -6.2 RidA family protein compare
ABZR86_RS09380 -1.0 -3.9 response regulator transcription factor compare
ABZR86_RS00660 -1.0 -2.7 recombinase RecA compare
ABZR86_RS00570 -1.0 -3.2 acetoacetyl-CoA reductase compare
ABZR86_RS00150 -1.0 -1.3 isochorismatase family protein compare
ABZR86_RS05860 -1.0 -1.9 adenylosuccinate lyase compare
ABZR86_RS13380 -1.0 -1.2 Sec-independent protein translocase subunit TatA compare
ABZR86_RS13180 -1.0 -1.7 K(+)-transporting ATPase subunit F compare
ABZR86_RS05900 -1.0 -5.0 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
ABZR86_RS03255 -1.0 -0.9 addiction module antidote protein compare
ABZR86_RS12780 -1.0 -3.8 pteridine reductase compare
ABZR86_RS05820 -1.0 -2.1 GntR family transcriptional regulator compare
ABZR86_RS10710 -1.0 -1.0 transcriptional regulator NrdR compare
ABZR86_RS05895 -1.0 -5.8 phosphoadenylyl-sulfate reductase compare
ABZR86_RS18775 -1.0 -1.0 nucleotidyltransferase family protein compare
ABZR86_RS08415 -1.0 -1.9 OmpA family protein compare
ABZR86_RS02215 -0.9 -2.0 FHA domain-containing protein compare
ABZR86_RS05690 -0.9 -0.8 RnfH family protein compare
ABZR86_RS14870 -0.9 -0.8 AAA family ATPase compare
ABZR86_RS02200 -0.9 -6.2 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR86_RS02505 -0.9 -1.5 hypothetical protein compare
ABZR86_RS09485 -0.9 -0.9 SUF system Fe-S cluster assembly regulator compare
ABZR86_RS05020 -0.9 -1.6 hypothetical protein compare
ABZR86_RS03500 -0.9 -6.9 TonB-dependent siderophore receptor compare
ABZR86_RS04375 -0.9 -1.2 GNAT family N-acetyltransferase compare
ABZR86_RS20010 -0.9 -5.4 gamma-glutamyltransferase compare
ABZR86_RS15305 -0.9 -2.3 MbcA/ParS/Xre antitoxin family protein compare
ABZR86_RS03535 -0.9 -1.6 GTP 3',8-cyclase MoaA compare
ABZR86_RS11880 -0.8 -2.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR86_RS11485 -0.8 -2.3 hypothetical protein compare
ABZR86_RS18495 -0.8 -4.3 polysaccharide biosynthesis tyrosine autokinase compare
ABZR86_RS02305 -0.8 -0.8 hypothetical protein compare
ABZR86_RS19460 -0.8 -1.0 RDD family protein compare
ABZR86_RS10840 -0.8 -1.1 Holliday junction branch migration protein RuvA compare
ABZR86_RS20455 -0.8 -1.2 YXWGXW repeat-containing protein compare
ABZR86_RS17550 -0.8 -6.2 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase compare
ABZR86_RS20110 -0.8 -0.9 flagellar basal body P-ring protein FlgI compare
ABZR86_RS07660 -0.8 -2.2 exodeoxyribonuclease V subunit gamma compare
ABZR86_RS15790 -0.8 -2.8 hypothetical protein compare
ABZR86_RS00320 -0.8 -1.3 methyltransferase compare
ABZR86_RS10425 -0.8 -1.1 pyrroline-5-carboxylate reductase compare
ABZR86_RS16490 -0.8 -4.7 amino acid aminotransferase compare
ABZR86_RS17940 -0.8 -2.8 FUSC family protein compare
ABZR86_RS05610 -0.8 -4.2 2OG-Fe(II) oxygenase compare
ABZR86_RS02185 -0.8 -3.7 tRNA 2-thiouridine(34) synthase MnmA compare
ABZR86_RS05890 -0.8 -4.3 bifunctional sulfate adenylyltransferase/adenylylsulfate kinase compare
ABZR86_RS20340 -0.8 -0.7 nuclear transport factor 2 family protein compare
ABZR86_RS09960 -0.8 -2.4 pilin compare
ABZR86_RS22115 -0.8 -1.7 hypothetical protein compare
ABZR86_RS00830 -0.7 -4.0 glucose-6-phosphate isomerase compare
ABZR86_RS15925 -0.7 -4.2 threonine ammonia-lyase, biosynthetic compare
ABZR86_RS16300 -0.7 -2.0 YlcI/YnfO family protein compare
ABZR86_RS18250 -0.7 -3.0 TetR/AcrR family transcriptional regulator compare
ABZR86_RS14285 -0.7 -1.9 antibiotic biosynthesis monooxygenase compare
ABZR86_RS10315 -0.7 -2.6 Imm42 family immunity protein compare
ABZR86_RS06190 -0.7 -1.0 YceD family protein compare
ABZR86_RS07095 -0.7 -3.1 S-methyl-5'-thioinosine phosphorylase compare
ABZR86_RS05000 -0.7 -1.2 type II secretion system protein GspK compare
ABZR86_RS13285 -0.7 -1.4 hypothetical protein compare
ABZR86_RS07265 -0.7 -1.7 protein phosphatase 2C domain-containing protein compare
ABZR86_RS13465 -0.7 -1.4 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source L-Lysine in Dyella japonica UNC79MFTsu3.2

For nitrogen source L-Lysine across organisms