Experiment set3IT083 for Caulobacter crescentus NA1000

Compare to:

PYE with copper (II) chloride dihydrate 0.25 mM

Group: stress
Media: PYE + copper (II) chloride dihydrate (0.25 mM)
Culturing: Caulo_ML2, 24-well transparent microplate; Multitron, Aerobic, at 30 (C), shaken=700 rpm
Growth: about 4.8 generations
By: Adam on 1-May-17
Media components: 2 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.8 mM Magnesium sulfate, 0.5 mM Calcium chloride
Growth plate: 1707 B2

Specific Phenotypes

For 12 genes in this experiment

For stress copper (II) chloride dihydrate in Caulobacter crescentus NA1000

For stress copper (II) chloride dihydrate across organisms

SEED Subsystems

Subsystem #Specific
Alkanesulfonate assimilation 2
Copper homeostasis 2
Cobalamin synthesis 1
Coenzyme B12 biosynthesis 1
Thiamin biosynthesis 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
assimilatory sulfate reduction III 3 3 1
5-methylbenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 1 1
adeninyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 1 1
5-methoxy-6-methylbenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 1 1
adenosylcobalamin biosynthesis from adenosylcobinamide-GDP I 3 1 1
benzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 1 1
5-hydroxybenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 1 1
2-methyladeninyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 1 1
5-methoxybenzimidazolyl adenosylcobamide biosynthesis from adenosylcobinamide-GDP 3 1 1
assimilatory sulfate reduction I 4 4 1
superpathway of adenosylcobalamin salvage from cobinamide I 8 4 1
superpathway of sulfate assimilation and cysteine biosynthesis 9 9 1
superpathway of adenosylcobalamin salvage from cobinamide II 9 4 1
superpathway of sulfur amino acid biosynthesis (Saccharomyces cerevisiae) 10 7 1
superpathway of L-methionine biosynthesis (by sulfhydrylation) 12 12 1
adenosylcobalamin biosynthesis II (aerobic) 33 15 1
adenosylcobalamin biosynthesis I (anaerobic) 36 14 1