Experiment set3IT082 for Pseudomonas fluorescens FW300-N2E2

Compare to:

LB

200 most important genes:

  gene name fitness t score description  
Pf6N2E2_2129 -6.6 -6.3 Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup compare
Pf6N2E2_5014 -5.0 -2.4 Apolipoprotein N-acyltransferase (EC 2.3.1.-) / Copper homeostasis protein CutE compare
Pf6N2E2_4416 -4.5 -5.3 Tyrosine recombinase XerC compare
Pf6N2E2_3460 -3.1 -3.0 Exodeoxyribonuclease V beta chain (EC 3.1.11.5) compare
Pf6N2E2_5527 -2.9 -4.0 Cold shock protein CspC compare
Pf6N2E2_4352 -2.9 -4.2 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
Pf6N2E2_3461 -2.8 -2.7 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
Pf6N2E2_4153 -2.1 -2.8 Sensory box histidine kinase compare
Pf6N2E2_5536 -2.0 -2.4 Holliday junction DNA helicase RuvA compare
Pf6N2E2_4162 -1.9 -4.2 DNA polymerase I (EC 2.7.7.7) compare
Pf6N2E2_4803 -1.7 -2.6 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical (EC 3.6.1.41) compare
Pf6N2E2_3667 -1.7 -1.9 Heptose kinase WapQ, eukaryotic type compare
Pf6N2E2_2753 -1.6 -4.2 HtrA protease/chaperone protein compare
Pf6N2E2_5178 -1.5 -2.2 CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) compare
Pf6N2E2_1056 -1.5 -2.4 Quinone oxidoreductase (EC 1.6.5.5) compare
Pf6N2E2_2320 -1.5 -4.3 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
Pf6N2E2_4541 -1.3 -1.8 hypothetical protein compare
Pf6N2E2_1705 -1.3 -2.3 Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) compare
Pf6N2E2_2156 -1.3 -2.5 Putative polyketide synthase (Fragment) compare
Pf6N2E2_827 -1.2 -1.6 probable dioxygenase compare
Pf6N2E2_3908 -1.2 -5.3 Glutamate--cysteine ligase (EC 6.3.2.2) compare
Pf6N2E2_3351 -1.2 -3.6 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf6N2E2_4273 -1.2 -5.5 ATP-dependent DNA helicase UvrD/PcrA compare
Pf6N2E2_178 -1.2 -1.5 Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) compare
Pf6N2E2_3782 -1.2 -3.1 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
Pf6N2E2_339 -1.2 -1.3 Glutathione-regulated potassium-efflux system protein KefC compare
Pf6N2E2_2218 -1.1 -4.0 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
Pf6N2E2_5252 -1.1 -2.4 FIG00956396: hypothetical protein compare
Pf6N2E2_2285 -1.1 -1.9 FIG00954079: hypothetical protein compare
Pf6N2E2_2318 -1.1 -5.9 Type cbb3 cytochrome oxidase biogenesis protein CcoI; Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf6N2E2_4159 -1.1 -2.8 Cytochrome c4 compare
Pf6N2E2_5006 -1.1 -5.5 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
Pf6N2E2_5338 -1.1 -6.1 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
Pf6N2E2_2413 -1.1 -2.5 FIG074102: hypothetical protein compare
Pf6N2E2_3258 -1.1 -4.4 Uncharacterized ABC transporter, periplasmic component YrbD compare
Pf6N2E2_2992 -1.1 -3.7 Regulatory protein RecX compare
Pf6N2E2_2317 -1.1 -4.6 Putative analog of CcoH, COG3198 compare
Pf6N2E2_2794 -1.1 -1.3 putative membrane protein compare
Pf6N2E2_4369 -1.1 -2.3 Exodeoxyribonuclease III (EC 3.1.11.2) compare
Pf6N2E2_5316 -1.0 -2.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf6N2E2_4353 -1.0 -3.2 Hydrogen peroxide-inducible genes activator compare
Pf6N2E2_2527 -1.0 -4.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf6N2E2_2325 -1.0 -4.8 Recombination protein RecR compare
Pf6N2E2_2827 -1.0 -1.9 hypothetical protein compare
Pf6N2E2_3264 -1.0 -3.1 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
Pf6N2E2_5739 -1.0 -2.0 Cobalamin biosynthesis protein BluB @ 5,6-dimethylbenzimidazole synthase, flavin destructase family compare
Pf6N2E2_5816 -1.0 -1.8 Smr domain protein compare
Pf6N2E2_4071 -0.9 -3.7 Phosphate transport system regulatory protein PhoU compare
Pf6N2E2_3666 -0.9 -3.9 InaA protein compare
Pf6N2E2_5508 -0.9 -1.9 Formyltetrahydrofolate deformylase (EC 3.5.1.10) compare
Pf6N2E2_122 -0.9 -2.4 Tyrosine-protein kinase Wzc (EC 2.7.10.2) compare
Pf6N2E2_4057 -0.9 -0.9 lipoprotein, putative compare
Pf6N2E2_5339 -0.9 -4.1 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
Pf6N2E2_2646 -0.9 -1.8 FIG00953416: hypothetical protein compare
Pf6N2E2_4454 -0.9 -3.4 Exopolyphosphatase (EC 3.6.1.11) compare
Pf6N2E2_3539 -0.8 -2.7 FIG00955840: hypothetical protein compare
Pf6N2E2_6095 -0.8 -1.9 tRNA-Asn-GTT compare
Pf6N2E2_1315 -0.8 -1.7 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) compare
Pf6N2E2_3786 -0.8 -2.2 Twin-arginine translocation protein TatC compare
Pf6N2E2_5677 -0.8 -1.6 Carbon storage regulator compare
Pf6N2E2_3656 -0.8 -4.4 Probable transcription regulator Mig-14 compare
Pf6N2E2_2755 -0.8 -1.3 Sigma factor RpoE negative regulatory protein RseA compare
Pf6N2E2_2605 -0.8 -3.4 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_2552 -0.8 -3.7 Cytochrome c heme lyase subunit CcmH compare
Pf6N2E2_5103 -0.8 -1.4 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
Pf6N2E2_170 -0.8 -1.9 lipoprotein, putative compare
Pf6N2E2_1124 -0.8 -2.5 Ferric siderophore transport system, periplasmic binding protein TonB compare
Pf6N2E2_43 -0.8 -3.8 Histidine permease YuiF compare
Pf6N2E2_2440 -0.8 -1.3 Free methionine-(R)-sulfoxide reductase, contains GAF domain compare
Pf6N2E2_5340 -0.8 -2.6 Stringent starvation protein A compare
Pf6N2E2_3060 -0.8 -2.8 Outer membrane protein H precursor compare
Pf6N2E2_2940 -0.8 -2.9 OmpA family protein compare
Pf6N2E2_5337 -0.8 -2.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Pf6N2E2_5428 -0.8 -3.9 DNA recombination and repair protein RecO compare
Pf6N2E2_3373 -0.8 -2.4 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Pf6N2E2_5156 -0.8 -1.5 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
Pf6N2E2_6018 -0.7 -3.3 Fumarylacetoacetate hydrolase family protein compare
Pf6N2E2_2546 -0.7 -2.1 Carbon storage regulator compare
Pf6N2E2_5986 -0.7 -2.1 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_1032 -0.7 -1.3 Alkanesulfonates ABC transporter ATP-binding protein / Sulfonate ABC transporter, ATP-binding subunit SsuB compare
Pf6N2E2_2574 -0.7 -1.7 Flagellar synthesis regulator FleN compare
Pf6N2E2_5331 -0.7 -4.0 ATPase, AFG1 family compare
Pf6N2E2_664 -0.7 -1.7 Acetoin catabolism protein X compare
Pf6N2E2_2128 -0.7 -3.4 Short-chain dehydrogenase/reductase SDR compare
Pf6N2E2_4205 -0.7 -3.1 Chromosome (plasmid) partitioning protein ParA compare
Pf6N2E2_2217 -0.7 -3.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Pf6N2E2_1323 -0.7 -2.7 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) compare
Pf6N2E2_3475 -0.7 -1.5 hypothetical protein compare
Pf6N2E2_4531 -0.7 -1.3 hypothetical protein compare
Pf6N2E2_146 -0.7 -1.7 Transcriptional regulator, MarR family compare
Pf6N2E2_4612 -0.7 -3.0 Glutathione synthetase (EC 6.3.2.3) compare
Pf6N2E2_3835 -0.7 -2.5 Carboxyl-terminal protease (EC 3.4.21.102) compare
Pf6N2E2_5155 -0.7 -2.1 Poly(A) polymerase (EC 2.7.7.19) compare
Pf6N2E2_3027 -0.7 -1.4 Baseplate assembly protein V compare
Pf6N2E2_3607 -0.7 -3.9 3'-to-5' exoribonuclease RNase R compare
Pf6N2E2_3785 -0.7 -2.7 Twin-arginine translocation protein TatB compare
Pf6N2E2_603 -0.7 -2.8 FIG00953934: hypothetical protein compare
Pf6N2E2_649 -0.7 -1.4 General secretion pathway protein L compare
Pf6N2E2_6140 -0.7 -0.9 Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA compare
Pf6N2E2_3198 -0.7 -1.2 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Pf6N2E2_3969 -0.6 -1.0 Membrane-fusion protein compare
Pf6N2E2_2176 -0.6 -1.9 Amidases related to nicotinamidase compare
Pf6N2E2_2833 -0.6 -3.4 Protocatechuate 3,4-dioxygenase alpha chain (EC 1.13.11.3) compare
Pf6N2E2_2870 -0.6 -1.8 Ribonuclease BN (EC 3.1.-.-) compare
Pf6N2E2_5505 -0.6 -1.4 hypothetical protein compare
Pf6N2E2_1116 -0.6 -1.4 Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) compare
Pf6N2E2_1885 -0.6 -2.0 Transcriptional regulator, AraC family compare
Pf6N2E2_5430 -0.6 -4.1 Transglycosylase, Slt family compare
Pf6N2E2_2488 -0.6 -1.8 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf6N2E2_3132 -0.6 -2.5 FIG00954548: hypothetical protein compare
Pf6N2E2_3183 -0.6 -1.8 Believed to be involved in assembly of Fe-S clusters compare
Pf6N2E2_70 -0.6 -2.6 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf6N2E2_1385 -0.6 -1.4 FIG00956261: hypothetical protein compare
Pf6N2E2_3055 -0.6 -2.1 Ribonuclease HII (EC 3.1.26.4) compare
Pf6N2E2_2477 -0.6 -1.2 ABC transporter ATP-binding protein YvcR compare
Pf6N2E2_55 -0.6 -2.1 Probable hydrolase compare
Pf6N2E2_5554 -0.6 -2.4 FIG023103: Predicted transmembrane protein compare
Pf6N2E2_1340 -0.6 -2.2 major pilin protein fimA compare
Pf6N2E2_625 -0.6 -2.9 MoxR-like ATPase in aerotolerance operon compare
Pf6N2E2_3529 -0.6 -1.6 Toxin A compare
Pf6N2E2_3713 -0.6 -1.5 Acyl carrier protein compare
Pf6N2E2_2126 -0.6 -3.2 4Fe-4S ferredoxin, iron-sulfur binding compare
Pf6N2E2_3226 -0.6 -1.9 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf6N2E2_5993 -0.6 -1.9 FIG00957412: hypothetical protein compare
Pf6N2E2_1169 -0.6 -1.6 TnpR protein compare
Pf6N2E2_4372 -0.6 -2.2 FIG00460773: hypothetical protein compare
Pf6N2E2_869 -0.6 -2.4 FMN oxidoreductase compare
Pf6N2E2_1299 -0.6 -1.4 Transcriptional regulator, TetR family compare
Pf6N2E2_4197 -0.6 -4.0 DNA recombination and repair protein RecF compare
Pf6N2E2_3096 -0.6 -0.9 Periplasmic protein TonB, links inner and outer membranes compare
Pf6N2E2_4427 -0.6 -1.6 FIG00954215: hypothetical protein compare
Pf6N2E2_2373 -0.6 -1.2 Type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid) compare
Pf6N2E2_54 -0.6 -2.7 Transcriptional regulator, TetR family compare
Pf6N2E2_4417 -0.6 -2.3 Protein of unknown function DUF484 compare
Pf6N2E2_1606 -0.6 -2.7 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf6N2E2_5520 -0.6 -2.7 Sensory box histidine kinase compare
Pf6N2E2_367 -0.6 -1.8 Acetylornithine deacetylase (EC 3.5.1.16) compare
Pf6N2E2_4638 -0.6 -1.4 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
Pf6N2E2_5024 -0.6 -2.1 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf6N2E2_3842 -0.6 -2.0 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf6N2E2_1691 -0.6 -0.9 hypothetical protein compare
Pf6N2E2_4505 -0.6 -2.4 Alkanesulfonates transport system permease protein compare
Pf6N2E2_5633 -0.6 -4.5 Aromatic amino acid transport protein AroP compare
Pf6N2E2_2693 -0.5 -1.0 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
Pf6N2E2_2572 -0.5 -1.2 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf6N2E2_502 -0.5 -1.9 hypothetical protein compare
Pf6N2E2_1081 -0.5 -1.2 probable membrane protein YPO3302 compare
Pf6N2E2_2277 -0.5 -1.3 NADPH-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.13) compare
Pf6N2E2_75 -0.5 -2.3 Colicin V production protein compare
Pf6N2E2_161 -0.5 -2.3 Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1) compare
Pf6N2E2_2314 -0.5 -1.5 VapB protein (antitoxin to VapC) compare
Pf6N2E2_1656 -0.5 -1.0 hypothetical protein compare
Pf6N2E2_3370 -0.5 -4.1 DNA repair protein RecN compare
Pf6N2E2_861 -0.5 -2.2 Transcriptional regulator, LysR family compare
Pf6N2E2_5768 -0.5 -1.8 DNA recombination-dependent growth factor C compare
Pf6N2E2_734 -0.5 -1.4 Molybdenum cofactor biosynthesis protein MoaA compare
Pf6N2E2_5943 -0.5 -0.8 hypothetical protein compare
Pf6N2E2_2310 -0.5 -3.2 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf6N2E2_5622 -0.5 -2.0 Translation initiation factor 2 (IF-2; GTPase) compare
Pf6N2E2_309 -0.5 -1.1 FIG00957702: hypothetical protein compare
Pf6N2E2_5869 -0.5 -1.5 Helicase subunit of the DNA excision repair complex compare
Pf6N2E2_2013 -0.5 -0.9 hypothetical protein compare
Pf6N2E2_5171 -0.5 -4.3 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf6N2E2_525 -0.5 -2.1 C4-type zinc finger protein, DksA/TraR family compare
Pf6N2E2_3748 -0.5 -2.7 Cytochrome B561 compare
Pf6N2E2_1670 -0.5 -2.4 conserved membrane protein compare
Pf6N2E2_3515 -0.5 -2.9 Probable transmembrane protein compare
Pf6N2E2_700 -0.5 -1.8 Heme d1 biosynthesis protein NirL compare
Pf6N2E2_5703 -0.5 -2.2 outer membrane protein H1 compare
Pf6N2E2_623 -0.5 -0.8 FIG00954674: hypothetical protein compare
Pf6N2E2_3122 -0.5 -0.9 Chemotaxis signal transduction protein compare
Pf6N2E2_2252 -0.5 -2.5 NreA-like protein compare
Pf6N2E2_3588 -0.5 -2.0 hypothetical protein compare
Pf6N2E2_384 -0.5 -1.7 Glycine cleavage system transcriptional activator compare
Pf6N2E2_33 -0.5 -1.7 Diaminopimelate epimerase (EC 5.1.1.7) compare
Pf6N2E2_2967 -0.5 -0.7 Cold shock protein CspA compare
Pf6N2E2_4424 -0.5 -1.6 Regulator of nucleoside diphosphate kinase compare
Pf6N2E2_5001 -0.5 -0.8 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) compare
Pf6N2E2_5506 -0.5 -3.2 Exodeoxyribonuclease I (EC 3.1.11.1) compare
Pf6N2E2_4615 -0.5 -1.3 type IV pili signal transduction protein PilI compare
Pf6N2E2_4548 -0.5 -0.9 hypothetical protein compare
Pf6N2E2_5976 -0.5 -2.3 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
Pf6N2E2_5028 -0.5 -1.9 Ribosomal large subunit pseudouridine synthase E (EC 4.2.1.70) compare
Pf6N2E2_447 -0.5 -2.4 Alkyl hydroperoxide reductase protein C (EC 1.6.4.-) compare
Pf6N2E2_5632 -0.5 -1.7 Aromatic amino acid transport protein AroP compare
Pf6N2E2_754 -0.5 -1.2 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf6N2E2_1343 -0.5 -1.8 Transcriptional regulator compare
Pf6N2E2_2465 -0.5 -3.0 Cys regulon transcriptional activator CysB compare
Pf6N2E2_2499 -0.5 -1.6 Competence protein ComEA helix-hairpin-helix region precursor compare
Pf6N2E2_723 -0.5 -1.4 FIG138517: Putative lipid carrier protein compare
Pf6N2E2_4187 -0.5 -2.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Pf6N2E2_89 -0.5 -0.9 hypothetical protein compare
Pf6N2E2_5476 -0.5 -1.6 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf6N2E2_2384 -0.5 -2.2 CmpX compare
Pf6N2E2_2701 -0.5 -2.3 FIG00954689: hypothetical protein compare
Pf6N2E2_3611 -0.5 -0.4 HflC protein compare
Pf6N2E2_638 -0.5 -1.2 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf6N2E2_342 -0.5 -0.8 DNA-binding response regulator compare
Pf6N2E2_338 -0.5 -1.1 Transcriptional regulator, AraC family compare
Pf6N2E2_2274 -0.5 -1.8 Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E2 in lb experiments