Experiment set3IT082 for Pseudomonas fluorescens FW300-N2E3

Compare to:

LB with Spectinomycin dihydrochloride pentahydrate 0.1 mg/ml

200 most important genes:

  gene name fitness t score description  
AO353_26835 -3.9 -3.7 transcriptional regulator compare
AO353_26845 -3.5 -12.0 acriflavine resistance protein B compare
AO353_22685 -3.5 -4.7 peroxidase compare
AO353_06415 -2.8 -5.3 hypothetical protein compare
AO353_03715 -2.8 -3.3 H-NS histone compare
AO353_02250 -2.8 -4.5 chorismate synthase compare
AO353_09315 -2.7 -11.2 LysR family transcriptional regulator compare
AO353_11750 -2.7 -3.1 ATPase compare
AO353_26840 -2.5 -3.3 RND transporter compare
AO353_17290 -2.5 -6.8 multidrug transporter compare
AO353_03615 -2.4 -3.6 cold-shock protein compare
AO353_09275 -2.3 -3.8 DNA-directed RNA polymerase subunit omega compare
AO353_12115 -2.3 -3.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase compare
AO353_00515 -2.2 -4.2 hypothetical protein compare
AO353_09890 -2.2 -5.5 phosphate ABC transporter ATP-binding protein compare
AO353_10930 -2.2 -8.2 DNA polymerase I compare
AO353_08170 -2.2 -5.1 hypothetical protein compare
AO353_04490 -2.1 -9.7 murein transglycosylase compare
AO353_16940 -2.1 -6.1 deoxycytidine triphosphate deaminase compare
AO353_13160 -2.0 -2.7 membrane protease HflC compare
AO353_00825 -2.0 -4.4 porin compare
AO353_12500 -1.9 -2.6 shikimate kinase compare
AO353_03580 -1.9 -3.9 ATP-dependent DNA helicase RuvB compare
AO353_11730 -1.8 -8.8 glutamate--cysteine ligase compare
AO353_16805 -1.8 -5.8 recombinase RecA compare
AO353_05625 -1.8 -2.0 transcription elongation factor GreA compare
AO353_06040 -1.8 -3.5 exodeoxyribonuclease V subunit alpha compare
AO353_07315 -1.8 -2.9 rRNA methyltransferase compare
AO353_03420 -1.7 -5.0 phosphogluconate dehydratase compare
AO353_15905 -1.7 -6.6 outer membrane protein assembly factor BamB compare
AO353_07355 -1.7 -5.0 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO353_04325 -1.7 -2.1 hypothetical protein compare
AO353_09240 -1.6 -3.7 acetylglutamate kinase compare
AO353_13100 -1.6 -2.2 GTPase RsgA compare
AO353_09250 -1.6 -3.3 exodeoxyribonuclease III compare
AO353_00495 -1.6 -2.5 DNA topoisomerase I compare
AO353_07155 -1.6 -6.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
AO353_13220 -1.6 -5.9 hypothetical protein compare
AO353_20800 -1.6 -2.2 hypothetical protein compare
AO353_06045 -1.5 -6.0 exodeoxyribonuclease V subunit beta compare
AO353_04565 -1.5 -5.4 nucleoid-associated protein compare
AO353_02685 -1.5 -4.0 phosphoribosylglycinamide formyltransferase compare
AO353_18540 -1.5 -2.7 pseudouridine synthase compare
AO353_00430 -1.5 -3.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO353_03795 -1.5 -3.9 fumarate hydratase compare
AO353_27650 -1.5 -4.5 cell division protein FtsK compare
AO353_09905 -1.5 -7.4 phosphate-binding protein compare
AO353_05420 -1.4 -2.0 peptide chain release factor 3 compare
AO353_03590 -1.4 -3.3 crossover junction endodeoxyribonuclease RuvC compare
AO353_08350 -1.4 -6.0 hypothetical protein compare
AO353_03710 -1.4 -2.6 formyltetrahydrofolate deformylase compare
AO353_02710 -1.4 -8.2 (p)ppGpp synthetase compare
AO353_04355 -1.4 -2.1 homoserine dehydrogenase compare
AO353_04190 -1.3 -2.0 glycerol-3-phosphate dehydrogenase compare
AO353_11165 -1.3 -7.2 hypothetical protein compare
AO353_13225 -1.3 -2.5 50S ribosomal protein L9 compare
AO353_09915 -1.3 -6.5 long-chain acyl-CoA thioester hydrolase compare
AO353_07075 -1.3 -4.3 elongation factor Tu compare
AO353_12650 -1.3 -1.5 hypothetical protein compare
AO353_09345 -1.3 -2.5 hypothetical protein compare
AO353_10445 -1.3 -2.2 tRNA uridine 5-carboxymethylaminomethyl modification protein compare
AO353_23730 -1.3 -2.2 hypothetical protein compare
AO353_20185 -1.3 -4.8 DNA-binding protein compare
AO353_01915 -1.2 -1.6 GlcG protein compare
AO353_09320 -1.2 -6.7 ATP-dependent DNA helicase RecG compare
AO353_08980 -1.2 -3.0 heme biosynthesis operon protein HemX compare
AO353_08110 -1.2 -5.0 glutathione synthetase compare
AO353_06050 -1.2 -5.1 exodeoxyribonuclease V subunit gamma compare
AO353_20170 -1.2 -3.9 trigger factor compare
AO353_27695 -1.2 -5.8 isocitrate dehydrogenase compare
AO353_19310 -1.2 -1.9 enoyl-CoA hydratase compare
AO353_12915 -1.2 -5.5 carbamoyltransferase compare
AO353_21665 -1.2 -3.9 magnesium chelatase compare
AO353_10780 -1.2 -1.7 DNA-binding protein compare
AO353_09000 -1.1 -4.2 argininosuccinate lyase compare
AO353_19840 -1.1 -3.0 hypothetical protein compare
AO353_23720 -1.1 -3.0 BatB protein compare
AO353_20200 -1.1 -3.0 peptidylprolyl isomerase compare
AO353_26115 -1.1 -1.6 hypothetical protein compare
AO353_01795 -1.1 -2.4 hypothetical protein compare
AO353_28725 -1.1 -2.8 hypothetical protein compare
AO353_07515 -1.1 -1.8 transporter compare
AO353_23620 -1.1 -2.4 hypothetical protein compare
AO353_00460 -1.1 -2.4 TetR family transcriptional regulator compare
AO353_15170 -1.1 -2.5 cytochrome D ubiquinol oxidase subunit III compare
AO353_18780 -1.1 -4.8 cobyrinic acid a,c-diamide synthase compare
AO353_13200 -1.1 -6.8 exoribonuclease R compare
AO353_20175 -1.1 -2.6 ATP-dependent Clp protease proteolytic subunit compare
AO353_09720 -1.0 -1.4 hypothetical protein compare
AO353_11770 -1.0 -1.7 molecular chaperone Hsp33 compare
AO353_03595 -1.0 -2.7 hypothetical protein compare
AO353_10055 -1.0 -7.0 DNA helicase II compare
AO353_24595 -1.0 -2.3 hypothetical protein compare
AO353_13155 -1.0 -2.6 hypothetical protein compare
AO353_14485 -1.0 -0.9 pseudouridine synthase compare
AO353_10065 -1.0 -5.1 hypothetical protein compare
AO353_14220 -1.0 -1.0 ribosomal large subunit pseudouridine synthase D compare
AO353_04035 -1.0 -2.9 exclusion suppressor FxsA compare
AO353_13130 -1.0 -2.4 N-acetylmuramoyl-L-alanine amidase compare
AO353_13865 -1.0 -2.1 hypothetical protein compare
AO353_09900 -1.0 -6.4 phosphate ABC transporter permease compare
AO353_10510 -1.0 -1.5 benzoate transporter compare
AO353_08685 -0.9 -4.8 N-acetylglutamate synthase compare
AO353_04175 -0.9 -3.1 glycerol uptake facilitator GlpF compare
AO353_09260 -0.9 -4.4 ribonuclease PH compare
AO353_11850 -0.9 -3.0 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO353_03545 -0.9 -4.4 hypothetical protein compare
AO353_23710 -0.9 -3.2 protein BatD compare
AO353_11920 -0.9 -1.8 hypothetical protein compare
AO353_14420 -0.9 -2.9 molecular chaperone DnaK compare
AO353_02810 -0.9 -4.7 histidine kinase compare
AO353_03360 -0.9 -4.5 glucose-6-phosphate dehydrogenase compare
AO353_17365 -0.9 -2.2 hypothetical protein compare
AO353_16440 -0.9 -2.5 ArsC family transcriptional regulator compare
AO353_09060 -0.9 -2.1 hypothetical protein compare
AO353_03120 -0.9 -2.9 hypothetical protein compare
AO353_23220 -0.9 -2.0 hypothetical protein compare
AO353_12930 -0.9 -2.1 GlcNAc-PI de-N-acetylase compare
AO353_08080 -0.9 -3.8 chemotaxis protein compare
AO353_17295 -0.9 -6.7 multidrug transporter compare
AO353_17160 -0.9 -1.5 aspartate-semialdehyde dehydrogenase compare
AO353_21945 -0.9 -2.3 protein nirL compare
AO353_21425 -0.9 -2.6 hypothetical protein compare
AO353_15260 -0.9 -3.5 stringent starvation protein A compare
AO353_26055 -0.9 -1.8 hypothetical protein compare
AO353_03585 -0.8 -2.2 ATP-dependent DNA helicase RuvA compare
AO353_25955 -0.8 -2.2 NIPSNAP family containing protein compare
AO353_05010 -0.8 -1.8 HopJ type III effector protein compare
AO353_24765 -0.8 -2.7 GCN5 family acetyltransferase compare
AO353_12790 -0.8 -1.5 hypothetical protein compare
AO353_26215 -0.8 -3.5 hypothetical protein compare
AO353_22520 -0.8 -1.5 hypothetical protein compare
AO353_18700 -0.8 -2.1 flagellar biogenesis protein compare
AO353_13505 -0.8 -3.2 acetyltransferase compare
AO353_08885 -0.8 -6.5 polyphosphate kinase compare
AO353_01135 -0.8 -1.8 enoyl-CoA hydratase compare
AO353_09050 -0.8 -2.2 recombinase XerC compare
AO353_25335 -0.8 -1.4 malonate decarboxylase acyl carrier protein compare
AO353_07325 -0.8 -1.3 diadenosine tetraphosphatase compare
AO353_03515 -0.8 -1.5 cold-shock protein compare
AO353_13140 -0.8 -3.2 tRNA dimethylallyltransferase compare
AO353_11915 -0.8 -4.1 agmatine deiminase compare
AO353_14150 -0.8 -1.0 peptidylprolyl isomerase compare
AO353_16745 -0.8 -1.6 ArsR family transcriptional regulator compare
AO353_14775 -0.8 -3.5 hypothetical protein compare
AO353_12665 -0.8 -2.0 glycosyl transferase compare
AO353_16025 -0.8 -2.5 hypothetical protein compare
AO353_14590 -0.8 -1.0 serine kinase/phosphatase compare
AO353_02070 -0.7 -3.7 prephenate dehydratase compare
AO353_27725 -0.7 -1.9 GNAT family acetyltransferase compare
AO353_04240 -0.7 -1.6 chemotaxis protein CheW compare
AO353_05550 -0.7 -3.4 pseudouridine synthase compare
AO353_12110 -0.7 -4.0 peptidase M23 compare
AO353_04810 -0.7 -0.8 hypothetical protein compare
AO353_25320 -0.7 -2.0 phosphoribosyl-dephospho-CoA transferase compare
AO353_00540 -0.7 -1.6 multifunctional fatty acid oxidation complex subunit alpha compare
AO353_08100 -0.7 -1.8 chemotaxis protein CheY compare
AO353_15875 -0.7 -2.6 23S rRNA (adenine(2503)-C2)-methyltransferase compare
AO353_13685 -0.7 -2.7 3-dehydroquinate dehydratase compare
AO353_13085 -0.7 -2.5 histidine kinase compare
AO353_22800 -0.7 -1.9 sulfite reductase compare
AO353_14495 -0.7 -4.6 acetolactate synthase 3 catalytic subunit compare
AO353_04520 -0.7 -2.9 elongation factor 4 compare
AO353_27155 -0.7 -1.5 hypothetical protein compare
AO353_03275 -0.7 -0.9 LysR family transcriptional regulator compare
AO353_10440 -0.7 -2.9 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
AO353_25550 -0.7 -3.2 4-amino-4-deoxy-L-arabinose transferase compare
AO353_12460 -0.7 -3.6 malate dehydrogenase compare
AO353_02300 -0.7 -1.6 MarR family transcriptional regulator compare
AO353_20680 -0.7 -2.3 cell division protein compare
AO353_16380 -0.7 -2.1 hypothetical protein compare
AO353_06455 -0.7 -1.4 D-alanyl-D-alanine carboxypeptidase compare
AO353_12105 -0.7 -2.9 peptidase S41 compare
AO353_09950 -0.7 -2.6 aspartate ammonia-lyase compare
AO353_00650 -0.7 -1.5 cytochrome biogenesis protein compare
AO353_22890 -0.7 -2.8 secretion protein HlyD compare
AO353_10430 -0.7 -1.5 chromosome partitioning protein ParB compare
AO353_28210 -0.7 -1.8 2-haloalkanoic acid dehalogenase compare
AO353_18285 -0.7 -1.8 3-phosphoglycerate kinase compare
AO353_22375 -0.7 -2.0 cytochrome c-550 PedF compare
AO353_09045 -0.7 -1.3 hypothetical protein compare
AO353_13720 -0.7 -5.2 arginine decarboxylase compare
AO353_02100 -0.7 -2.2 phosphoglycolate phosphatase compare
AO353_21350 -0.7 -2.1 methylmalonate-semialdehyde dehydrogenase compare
AO353_24340 -0.7 -0.9 TetR family transcriptional regulator compare
AO353_03775 -0.7 -3.8 pyruvate kinase compare
AO353_12535 -0.7 -2.0 hypothetical protein compare
AO353_23735 -0.6 -3.4 AAA family ATPase compare
AO353_25530 -0.6 -3.0 UDP-4-amino-4-deoxy-L-arabinose-oxoglutarate aminotransferase compare
AO353_09895 -0.6 -3.3 phosphate ABC transporter permease compare
AO353_06775 -0.6 -3.0 dTDP-4-dehydrorhamnose reductase compare
AO353_02765 -0.6 -1.8 NAD(P)H-quinone oxidoreductase compare
AO353_14370 -0.6 -3.2 glucose-6-phosphate isomerase compare
AO353_19580 -0.6 -2.2 AraC family transcriptional regulator compare
AO353_24000 -0.6 -2.3 isochorismate synthase compare
AO353_14955 -0.6 -1.8 hypothetical protein compare
AO353_20565 -0.6 -1.1 tRNA-Ala compare
AO353_28310 -0.6 -1.9 deaminase compare
AO353_28680 -0.6 -2.0 transposase compare
AO353_19435 -0.6 -1.8 TetR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2E3 in stress experiments

For stress Spectinomycin dihydrochloride pentahydrate across organisms