Experiment set3IT082 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

Xantho_MME_glucose_dropout_LTH

200 most important genes:

  gene name fitness t score description  
Xcc-8004.622.1 -6.0 -5.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.2942.1 -5.2 -5.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) / Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) compare
Xcc-8004.621.1 -5.1 -7.1 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Xcc-8004.2944.1 -5.1 -5.0 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
Xcc-8004.5192.1 -5.1 -13.4 hypothetical protein compare
Xcc-8004.1615.1 -5.0 -3.4 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.1372.1 -5.0 -5.9 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.4481.1 -4.8 -9.1 hypothetical protein compare
Xcc-8004.1050.1 -4.7 -5.9 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Xcc-8004.271.1 -4.7 -4.6 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.2947.1 -4.7 -5.6 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Xcc-8004.3537.1 -4.7 -6.4 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) compare
Xcc-8004.1049.1 -4.5 -8.5 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Xcc-8004.1962.1 -4.4 -3.6 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Xcc-8004.1010.1 -4.3 -8.2 Aspartate aminotransferase (EC 2.6.1.1) compare
Xcc-8004.659.1 -4.3 -4.2 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.5020.1 -4.3 -6.4 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Xcc-8004.1964.1 -4.3 -13.1 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Xcc-8004.2946.1 -4.3 -5.8 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Xcc-8004.1053.1 -4.2 -8.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Xcc-8004.5193.1 -4.2 -21.0 Outer membrane protein assembly factor YaeT precursor compare
Xcc-8004.2086.1 -4.2 -2.9 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.4620.1 -4.0 -11.5 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.2949.1 -3.7 -4.3 ATP phosphoribosyltransferase (EC 2.4.2.17) compare
Xcc-8004.2948.1 -3.6 -6.4 Histidinol dehydrogenase (EC 1.1.1.23) compare
Xcc-8004.2943.1 -3.5 -7.1 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) compare
Xcc-8004.2931.1 -3.5 -6.2 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Xcc-8004.2079.1 -3.4 -4.7 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.1955.1 -3.4 -7.8 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.2945.1 -3.2 -3.3 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Xcc-8004.623.1 -3.2 -4.1 Phosphoserine phosphatase compare
Xcc-8004.3752.1 -3.2 -3.6 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.2406.1 -3.0 -11.0 Manganese transport protein MntH compare
Xcc-8004.3281.1 -3.0 -7.6 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.505.1 -2.9 -12.2 Biotin synthase (EC 2.8.1.6) compare
Xcc-8004.4948.1 -2.9 -4.3 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain compare
Xcc-8004.608.1 -2.9 -6.2 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Xcc-8004.130.1 -2.8 -10.6 hypothetical protein compare
Xcc-8004.1489.1 -2.8 -14.5 GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I compare
Xcc-8004.4752.1 -2.7 -3.6 DNA topoisomerase I (EC 5.99.1.2) compare
Xcc-8004.4111.1 -2.7 -6.5 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase II (EC 2.5.1.54) compare
Xcc-8004.914.1 -2.7 -9.4 tail-specific protease compare
Xcc-8004.2012.1 -2.7 -9.5 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.618.1 -2.7 -4.6 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.1196.1 -2.6 -8.7 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Xcc-8004.1967.1 -2.6 -9.9 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Xcc-8004.2449.1 -2.6 -5.9 Glucokinase (EC 2.7.1.2) compare
Xcc-8004.657.1 -2.5 -8.5 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.4398.1 -2.5 -8.7 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.4364.1 -2.5 -7.2 Cell division protein MraZ compare
Xcc-8004.1710.1 -2.5 -5.4 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.2217.1 -2.3 -5.1 FIG01209779: hypothetical protein compare
Xcc-8004.2450.1 -2.3 -13.0 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) compare
Xcc-8004.1873.1 -2.3 -2.8 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.1359.1 -2.3 -6.5 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.2081.1 -2.2 -5.0 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.2447.1 -2.2 -11.2 Phosphogluconate dehydratase (EC 4.2.1.12) compare
Xcc-8004.3283.1 -2.2 -8.3 Phosphoserine aminotransferase (EC 2.6.1.52) compare
Xcc-8004.4112.1 -2.2 -5.0 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.4732.1 -2.2 -2.1 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.2922.1 -2.0 -2.8 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) compare
Xcc-8004.3498.1 -2.0 -1.9 hypothetical protein compare
Xcc-8004.846.1 -1.9 -4.0 Protein of unknown function DUF484 compare
Xcc-8004.1056.1 -1.8 -2.8 2-isopropylmalate synthase (EC 2.3.3.13) compare
Xcc-8004.4210.1 -1.8 -7.9 Thymidine phosphorylase (EC 2.4.2.4) compare
Xcc-8004.2711.1 -1.8 -1.9 Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) compare
Xcc-8004.2259.1 -1.7 -4.7 PhbF compare
Xcc-8004.1677.1 -1.7 -4.4 FIG01209993: hypothetical protein compare
Xcc-8004.2011.1 -1.7 -2.6 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.3576.1 -1.6 -7.6 Intracellular PHB depolymerase (EC 3.1.1.-) compare
Xcc-8004.1241.1 -1.6 -5.2 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.5352.1 -1.6 -2.7 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.601.1 -1.6 -6.1 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.1137.1 -1.6 -3.2 FIG006231: RNA-binding protein compare
Xcc-8004.1236.1 -1.6 -6.3 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.270.1 -1.6 -6.0 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.1839.1 -1.5 -1.9 FIG01210863: hypothetical protein compare
Xcc-8004.1616.1 -1.5 -1.4 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.4539.1 -1.5 -7.6 Oligopeptidase A (EC 3.4.24.70) compare
Xcc-8004.3054.1 -1.5 -2.2 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.2387.1 -1.5 -2.3 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.2958.1 -1.4 -2.6 tryptophan-rich sensory protein compare
Xcc-8004.1436.1 -1.4 -1.8 Holliday junction DNA helicase RuvA compare
Xcc-8004.4373.1 -1.4 -3.9 LppC putative lipoprotein compare
Xcc-8004.4065.1 -1.4 -6.0 Exopolyphosphatase (EC 3.6.1.11) compare
Xcc-8004.5343.1 -1.4 -6.2 hypothetical protein compare
Xcc-8004.1316.1 -1.4 -2.0 hypothetical protein compare
Xcc-8004.2561.1 -1.3 -6.2 FIG01213638: hypothetical protein compare
Xcc-8004.1718.1 -1.3 -2.9 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Xcc-8004.3130.1 -1.3 -5.3 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Xcc-8004.764.1 -1.3 -2.3 FIG01213873: hypothetical protein compare
Xcc-8004.2920.1 -1.3 -6.0 Ferrous iron transport protein B compare
Xcc-8004.1696.1 -1.3 -2.0 N-acetylglutamate synthase (EC 2.3.1.1) compare
Xcc-8004.3313.1 -1.3 -3.3 LSU ribosomal protein L9p compare
Xcc-8004.2936.1 -1.3 -8.4 Amino acid transporters compare
Xcc-8004.4439.1 -1.3 -6.5 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.4985.1 -1.3 -6.4 Arginase (EC 3.5.3.1) compare
Xcc-8004.5132.1 -1.2 -5.1 Heavy metal RND efflux outer membrane protein, CzcC family compare
Xcc-8004.2337.1 -1.2 -3.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Xcc-8004.1725.1 -1.2 -3.4 Phenazine biosynthesis protein PhzF like compare
Xcc-8004.3310.1 -1.2 -3.7 Chromosome partition protein smc compare
Xcc-8004.2497.1 -1.2 -1.1 Mobile element protein compare
Xcc-8004.787.1 -1.2 -1.2 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.3754.1 -1.2 -1.9 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) compare
Xcc-8004.3816.1 -1.2 -5.1 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.703.1 -1.1 -1.7 hypothetical protein compare
Xcc-8004.3954.1 -1.1 -3.9 HflC protein compare
Xcc-8004.4743.1 -1.1 -4.1 Peptide deformylase (EC 3.5.1.88) compare
Xcc-8004.2105.1 -1.1 -4.5 FIG01210123: hypothetical protein compare
Xcc-8004.4633.1 -1.1 -1.8 FIG01210488: hypothetical protein compare
Xcc-8004.1568.1 -1.1 -2.0 Glycine cleavage system H protein compare
Xcc-8004.2865.1 -1.1 -1.7 FIG01210234: hypothetical protein compare
Xcc-8004.3590.1 -1.1 -1.9 FIG01211013: hypothetical protein compare
Xcc-8004.4073.1 -1.1 -6.5 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.2343.1 -1.1 -1.9 Cytochrome c-type biogenesis protein CcmE, heme chaperone compare
Xcc-8004.573.1 -1.1 -7.0 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) compare
Xcc-8004.1124.1 -1.0 -2.0 RidA/YER057c/UK114 superfamily, group 3 compare
Xcc-8004.4477.1 -1.0 -2.1 Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) compare
Xcc-8004.5252.1 -1.0 -4.5 FIG01210658: hypothetical protein compare
Xcc-8004.252.1 -1.0 -3.7 Nitrogen regulation protein NtrC compare
Xcc-8004.1660.1 -1.0 -1.1 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.3792.1 -1.0 -1.3 Mobile element protein compare
Xcc-8004.3230.1 -1.0 -2.2 Phage DNA invertase compare
Xcc-8004.234.1 -1.0 -7.2 cardiolipin synthase compare
Xcc-8004.3304.1 -1.0 -1.4 FIG01211108: hypothetical protein compare
Xcc-8004.3208.1 -1.0 -1.1 Methyltransferase type 12 compare
Xcc-8004.2839.1 -1.0 -1.2 Signal transduction histidine kinase CheA (EC 2.7.3.-) compare
Xcc-8004.2165.1 -1.0 -6.5 Ornithine aminotransferase (EC 2.6.1.13); Succinylornithine transaminase (EC 2.6.1.81); Acetylornithine aminotransferase (EC 2.6.1.11); N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) compare
Xcc-8004.2929.1 -1.0 -3.6 D-2-hydroxyglutarate dehydrogenase compare
Xcc-8004.4700.1 -1.0 -1.9 FIG01210206: hypothetical protein compare
Xcc-8004.2754.1 -0.9 -5.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Xcc-8004.3328.1 -0.9 -2.7 Kynurenine 3-monooxygenase (EC 1.14.13.9) compare
Xcc-8004.1685.1 -0.9 -0.9 hypothetical protein compare
Xcc-8004.5201.1 -0.9 -2.0 FIG01211164: hypothetical protein compare
Xcc-8004.4947.1 -0.9 -2.6 Histone H1 compare
Xcc-8004.1249.1 -0.9 -3.5 Transcriptional regulator compare
Xcc-8004.950.1 -0.9 -1.4 General secretion pathway protein L compare
Xcc-8004.3722.1 -0.9 -0.8 HrpB7 protein compare
Xcc-8004.3955.1 -0.9 -3.4 HflK protein compare
Xcc-8004.2533.1 -0.9 -2.8 Candidate type III effector Hop protein compare
Xcc-8004.1400.1 -0.9 -1.3 Cobalamin synthase (EC 2.7.8.26) compare
Xcc-8004.4836.1 -0.9 -3.3 Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA compare
Xcc-8004.1727.1 -0.9 -2.4 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.1890.1 -0.9 -2.9 hypothetical protein compare
Xcc-8004.4697.1 -0.9 -3.1 FIG01210654: hypothetical protein compare
Xcc-8004.4957.1 -0.9 -1.9 hypothetical protein compare
Xcc-8004.1768.1 -0.9 -1.5 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Xcc-8004.3903.1 -0.9 -1.8 Mlr6856 protein compare
Xcc-8004.2785.1 -0.9 -2.6 Flagellar L-ring protein FlgH compare
Xcc-8004.1512.1 -0.9 -2.2 RNA polymerase sigma-70 factor compare
Xcc-8004.2713.1 -0.9 -0.7 Nitrate/nitrite transporter compare
Xcc-8004.1365.1 -0.9 -1.1 FIG01211058: hypothetical protein compare
Xcc-8004.4675.1 -0.9 -1.3 FIG01211280: hypothetical protein compare
Xcc-8004.4046.1 -0.9 -5.3 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.1858.1 -0.8 -1.0 FIG01211170: hypothetical protein compare
Xcc-8004.2009.1 -0.8 -3.8 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Xcc-8004.4884.1 -0.8 -2.4 Orotate phosphoribosyltransferase (EC 2.4.2.10) compare
Xcc-8004.2219.1 -0.8 -3.7 Magnesium and cobalt efflux protein CorC compare
Xcc-8004.1676.1 -0.8 -3.9 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.3696.1 -0.8 -2.3 hypothetical protein compare
Xcc-8004.4026.1 -0.8 -2.8 FIG01209666: hypothetical protein compare
Xcc-8004.3731.1 -0.8 -1.1 Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) compare
Xcc-8004.5407.1 -0.8 -2.8 GTPase and tRNA-U34 5-formylation enzyme TrmE compare
Xcc-8004.3131.1 -0.8 -2.6 hypothetical protein compare
Xcc-8004.5317.1 -0.8 -1.7 FIG01210332: hypothetical protein compare
Xcc-8004.730.1 -0.8 -3.4 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) compare
Xcc-8004.165.1 -0.8 -1.6 hypothetical protein compare
Xcc-8004.3222.1 -0.8 -1.3 Mobile element protein compare
Xcc-8004.2212.1 -0.8 -2.0 Putrescine transport system permease protein PotI (TC 3.A.1.11.2) compare
Xcc-8004.3655.1 -0.8 -0.8 FIG01210025: hypothetical protein compare
Xcc-8004.2428.1 -0.8 -2.6 Two-component system regulatory protein compare
Xcc-8004.2110.1 -0.8 -0.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4945.1 -0.8 -1.1 FIG01210349: hypothetical protein compare
Xcc-8004.3211.1 -0.8 -1.8 protein of unknown function DUF88 compare
Xcc-8004.3445.1 -0.8 -1.7 hypothetical protein compare
Xcc-8004.2900.1 -0.8 -3.0 response regulator compare
Xcc-8004.4248.1 -0.8 -2.2 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Xcc-8004.2879.1 -0.8 -0.9 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Xcc-8004.1158.1 -0.8 -0.9 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Xcc-8004.4025.1 -0.8 -4.7 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.3815.1 -0.8 -1.8 Cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-) compare
Xcc-8004.3171.1 -0.8 -2.5 FIG01213081: hypothetical protein compare
Xcc-8004.1504.1 -0.8 -0.8 type IV pili signal transduction protein PilI compare
Xcc-8004.4384.1 -0.7 -1.8 hypothetical protein compare
Xcc-8004.5203.1 -0.7 -2.1 Twin-arginine translocation protein TatB compare
Xcc-8004.2935.1 -0.7 -5.5 Amino acid transporters compare
Xcc-8004.1919.1 -0.7 -3.0 FIG056164: rhomboid family serine protease compare
Xcc-8004.3346.1 -0.7 -1.9 hypothetical protein compare
Xcc-8004.3978.1 -0.7 -1.6 FIG01211989: hypothetical protein compare
Xcc-8004.2356.1 -0.7 -1.8 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
Xcc-8004.1668.1 -0.7 -2.7 YrbA protein compare
Xcc-8004.4559.1 -0.7 -3.0 FIG01210482: hypothetical protein compare
Xcc-8004.3546.1 -0.7 -2.8 Sigma-fimbriae chaperone protein compare
Xcc-8004.726.1 -0.7 -1.0 Putative preQ0 transporter compare
Xcc-8004.4102.1 -0.7 -1.3 FIG01211949: hypothetical protein compare
Xcc-8004.4306.1 -0.7 -1.0 hypothetical protein compare
Xcc-8004.3660.1 -0.7 -2.1 Cold shock protein CspD compare
Xcc-8004.3325.1 -0.7 -2.7 3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6) compare
Xcc-8004.3327.1 -0.7 -3.3 Kynureninase (EC 3.7.1.3) compare
Xcc-8004.5205.1 -0.7 -2.4 FIG01210461: hypothetical protein compare


Specific Phenotypes

None in this experiment

For Xanthomonas campestris pv. campestris strain 8004 in xantho_mme_glucose_dropout_lth experiments