Experiment set3IT082 for Pseudomonas fluorescens SBW25-INTG

Compare to:

Ammonium chloride nitrogen source

200 most important genes:

  gene name fitness t score description  
PFLU_RS23590 -5.6 -3.9 gluconokinase compare
PFLU_RS01645 -5.5 -10.7 S41 family peptidase compare
PFLU_RS28695 -5.1 -3.5 phosphoglycerate dehydrogenase compare
PFLU_RS27370 -4.8 -6.5 anthranilate phosphoribosyltransferase compare
PFLU_RS03645 -4.7 -16.7 tetratricopeptide repeat protein compare
PFLU_RS27365 -4.6 -8.2 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS00180 -4.4 -4.2 tryptophan synthase subunit beta compare
PFLU_RS29885 -4.3 -11.2 LysR family transcriptional regulator compare
PFLU_RS02490 -4.3 -11.5 phosphoserine phosphatase SerB compare
PFLU_RS20540 -4.3 -9.6 phosphoribosylanthranilate isomerase compare
PFLU_RS20575 -4.2 -6.4 3-isopropylmalate dehydratase small subunit compare
PFLU_RS26545 -4.1 -14.7 sel1 repeat family protein compare
PFLU_RS24125 -4.0 -4.7 cold-shock protein compare
PFLU_RS01620 -3.9 -8.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS20580 -3.9 -13.3 3-isopropylmalate dehydratase large subunit compare
PFLU_RS14550 -3.8 -9.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS20565 -3.7 -14.8 3-isopropylmalate dehydrogenase compare
PFLU_RS22095 -3.7 -20.1 GTP diphosphokinase compare
PFLU_RS25760 -3.7 -12.7 glucose-6-phosphate isomerase compare
PFLU_RS04470 -3.7 -11.1 histidinol dehydrogenase compare
PFLU_RS29875 -3.7 -16.5 oxaloacetate decarboxylase subunit alpha compare
PFLU_RS01605 -3.7 -10.0 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS00175 -3.7 -5.6 tryptophan synthase subunit alpha compare
PFLU_RS24765 -3.7 -20.8 2-isopropylmalate synthase compare
PFLU_RS22740 -3.6 -4.8 phosphoadenylyl-sulfate reductase compare
PFLU_RS29880 -3.5 -14.4 acetyl-CoA carboxylase biotin carboxylase subunit compare
PFLU_RS01625 -3.5 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS29095 -3.4 -23.8 polyphosphate kinase 1 compare
PFLU_RS01900 -3.3 -8.4 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS28645 -3.3 -16.3 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS22595 -3.3 -3.8 OmpA family protein compare
PFLU_RS23070 -3.2 -2.0 50S ribosomal protein L32 compare
PFLU_RS23585 -3.2 -10.2 GntP family permease compare
PFLU_RS25640 -3.2 -12.9 ketol-acid reductoisomerase compare
PFLU_RS28535 -3.1 -16.3 dihydroxy-acid dehydratase compare
PFLU_RS28390 -3.1 -12.1 methionine biosynthesis protein MetW compare
PFLU_RS09055 -3.1 -3.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS28385 -3.1 -14.2 homoserine O-acetyltransferase compare
PFLU_RS12975 -3.1 -6.3 DUF934 domain-containing protein compare
PFLU_RS20510 -3.0 -13.8 O-succinylhomoserine sulfhydrylase compare
PFLU_RS24330 -3.0 -6.4 phosphogluconate dehydratase compare
PFLU_RS20690 -2.9 -5.6 hypothetical protein compare
PFLU_RS04465 -2.9 -10.3 ATP phosphoribosyltransferase compare
PFLU_RS06320 -2.9 -4.1 OmpH family outer membrane protein compare
PFLU_RS18505 -2.8 -12.1 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS23065 -2.7 -10.9 phosphate acyltransferase PlsX compare
PFLU_RS25735 -2.7 -8.2 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS03765 -2.6 -11.0 sulfate adenylyltransferase subunit CysD compare
PFLU_RS12980 -2.6 -10.0 nitrite/sulfite reductase compare
PFLU_RS23305 -2.5 -11.3 arginine N-succinyltransferase compare
PFLU_RS02590 -2.5 -9.1 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS23725 -2.5 -12.4 glucose-6-phosphate dehydrogenase compare
PFLU_RS03770 -2.5 -13.1 sulfate adenylyltransferase subunit CysN compare
PFLU_RS13715 -2.5 -2.8 MmcQ/YjbR family DNA-binding protein compare
PFLU_RS00415 -2.5 -1.7 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS25750 -2.5 -6.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS28655 -2.4 -13.4 HAD family hydrolase compare
PFLU_RS23310 -2.4 -9.3 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS26640 -2.3 -11.6 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS27650 -2.3 -13.8 biotin synthase BioB compare
PFLU_RS24485 -2.3 -11.2 hypothetical protein compare
PFLU_RS27645 -2.3 -12.4 8-amino-7-oxononanoate synthase compare
PFLU_RS23920 -2.2 -3.3 septation protein A compare
PFLU_RS25815 -2.2 -2.6 transcription termination/antitermination protein NusA compare
PFLU_RS29515 -2.2 -9.7 RidA family protein compare
PFLU_RS26595 -2.2 -1.5 lipoprotein compare
PFLU_RS25755 -2.2 -4.3 pantoate--beta-alanine ligase compare
PFLU_RS27635 -2.2 -9.9 malonyl-ACP O-methyltransferase BioC compare
PFLU_RS01485 -2.1 -12.3 cellulase compare
PFLU_RS22105 -2.1 -5.6 cysteine synthase CysM compare
PFLU_RS18530 -2.1 -4.8 DNA translocase FtsK compare
PFLU_RS28195 -2.1 -13.1 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
PFLU_RS22070 -2.0 -5.6 phosphoribosylglycinamide formyltransferase compare
PFLU_RS08410 -2.0 -7.2 HTH-type transcriptional regulator CysB compare
PFLU_RS24025 -2.0 -10.4 quinolinate synthase NadA compare
PFLU_RS24090 -2.0 -2.7 Holliday junction branch migration protein RuvA compare
PFLU_RS24095 -2.0 -2.3 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS28965 -2.0 -9.2 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS13540 -2.0 -4.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS02365 -1.9 -10.9 glycosyltransferase compare
PFLU_RS09980 -1.9 -14.1 peptidase S41 compare
PFLU_RS03970 -1.9 -7.9 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS27630 -1.9 -6.5 dethiobiotin synthase compare
PFLU_RS04715 -1.9 -5.4 D-alanine--D-alanine ligase compare
PFLU_RS17060 -1.9 -2.1 monooxygenase compare
PFLU_RS28650 -1.9 -7.3 RNA pyrophosphohydrolase compare
PFLU_RS05630 -1.9 -2.3 amino acid ABC transporter ATP-binding protein compare
PFLU_RS08160 -1.9 -7.9 sugar transferase compare
PFLU_RS28165 -1.8 -10.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS07685 -1.8 -3.0 transcriptional repressor LexA compare
PFLU_RS25715 -1.8 -9.3 RNA polymerase-binding protein DksA compare
PFLU_RS08505 -1.8 -7.2 protease HtpX compare
PFLU_RS04015 -1.8 -2.6 1-phosphofructokinase compare
PFLU_RS21495 -1.7 -3.1 TlpA family protein disulfide reductase compare
PFLU_RS29275 -1.7 -5.7 DUF484 family protein compare
PFLU_RS04070 -1.7 -5.3 peptide chain release factor 3 compare
PFLU_RS01610 -1.7 -8.3 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS00870 -1.7 -2.2 hypothetical protein compare
PFLU_RS18620 -1.7 -4.6 NADH-quinone oxidoreductase subunit B compare
PFLU_RS05965 -1.7 -1.7 hypothetical protein compare
PFLU_RS04435 -1.6 -6.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS20515 -1.6 -4.5 amidophosphoribosyltransferase compare
PFLU_RS24335 -1.6 -10.4 type I glyceraldehyde-3-phosphate dehydrogenase compare
PFLU_RS01895 -1.6 -4.5 phosphoribosyl-ATP diphosphatase compare
PFLU_RS22030 -1.6 -2.9 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
PFLU_RS00190 -1.6 -3.2 DUF883 domain-containing protein compare
PFLU_RS24670 -1.6 -2.8 HigA family addiction module antidote protein compare
PFLU_RS20520 -1.6 -8.0 colicin V production protein CvpA compare
PFLU_RS04325 -1.6 -11.4 ribonuclease G compare
PFLU_RS30160 -1.6 -2.8 ParB/RepB/Spo0J family partition protein compare
PFLU_RS08155 -1.6 -3.9 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS04150 -1.5 -4.4 DUF1043 family protein compare
PFLU_RS07785 -1.5 -9.1 VacJ family lipoprotein compare
PFLU_RS06555 -1.5 -8.5 OmpA family protein compare
PFLU_RS14545 -1.5 -3.1 hypothetical protein compare
PFLU_RS31590 -1.5 -1.5 hypothetical protein compare
PFLU_RS04315 -1.5 -3.5 rod shape-determining protein MreD compare
PFLU_RS21300 -1.5 -4.7 cysteine hydrolase compare
PFLU_RS02790 -1.4 -1.9 TetR family transcriptional regulator compare
PFLU_RS28690 -1.4 -9.2 FAD-binding oxidoreductase compare
PFLU_RS25730 -1.4 -10.6 PAS domain S-box protein compare
PFLU_RS27640 -1.4 -2.4 alpha/beta fold hydrolase compare
PFLU_RS22000 -1.4 -5.2 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
PFLU_RS23380 -1.3 -0.9 HAD-IB family hydrolase compare
PFLU_RS21060 -1.3 -4.0 TetR/AcrR family transcriptional regulator compare
PFLU_RS30165 -1.3 -6.3 ParA family protein compare
PFLU_RS24205 -1.3 -1.5 DNA binding protein compare
PFLU_RS26735 -1.3 -6.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS04440 -1.3 -7.4 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS01095 -1.3 -2.8 ribbon-helix-helix protein, CopG family compare
PFLU_RS02980 -1.3 -1.8 precorrin-8X methylmutase compare
PFLU_RS29490 -1.3 -6.6 ribonuclease PH compare
PFLU_RS07255 -1.3 -3.1 sulfurtransferase TusA family protein compare
PFLU_RS07275 -1.3 -2.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS20660 -1.2 -6.3 aspartate/tyrosine/aromatic aminotransferase compare
PFLU_RS11980 -1.2 -5.0 precorrin-6A synthase (deacetylating) compare
PFLU_RS18635 -1.2 -2.4 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS26635 -1.2 -5.0 D-alanyl-D-alanine carboxypeptidase compare
PFLU_RS20285 -1.2 -4.8 MerR family transcriptional regulator compare
PFLU_RS29360 -1.2 -1.8 cytochrome c5 family protein compare
PFLU_RS07725 -1.2 -3.4 Si-specific NAD(P)(+) transhydrogenase compare
PFLU_RS13350 -1.2 -1.8 ParD-like family protein compare
PFLU_RS25740 -1.2 -4.3 polynucleotide adenylyltransferase PcnB compare
PFLU_RS24085 -1.2 -3.2 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS04385 -1.2 -6.7 RNase adapter RapZ compare
PFLU_RS25585 -1.2 -1.5 exodeoxyribonuclease V subunit alpha compare
PFLU_RS01650 -1.2 -6.0 murein hydrolase activator EnvC compare
PFLU_RS27265 -1.2 -2.3 bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor compare
PFLU_RS03555 -1.1 -1.0 EscS/YscS/HrcS family type III secretion system export apparatus protein compare
PFLU_RS13045 -1.1 -5.0 AAA domain-containing protein compare
PFLU_RS25920 -1.1 -2.1 outer membrane protein assembly factor BamE compare
PFLU_RS19165 -1.1 -3.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS27380 -1.1 -6.9 anthranilate synthase component I compare
PFLU_RS25225 -1.1 -5.5 disulfide bond formation protein B compare
PFLU_RS31445 -1.1 -2.7 colicin immunity protein compare
PFLU_RS30030 -1.1 -1.0 membrane protein compare
PFLU_RS07225 -1.1 -7.7 L-aspartate oxidase compare
PFLU_RS02000 -1.0 -9.1 penicillin-binding protein 1A compare
PFLU_RS04650 -1.0 -7.7 ABC transporter substrate-binding protein compare
PFLU_RS00465 -1.0 -6.1 spore maturation protein compare
PFLU_RS26770 -1.0 -6.5 DedA family protein compare
PFLU_RS13365 -1.0 -1.5 hypothetical protein compare
PFLU_RS04430 -1.0 -5.2 ATP-binding cassette domain-containing protein compare
PFLU_RS29550 -1.0 -5.2 ATP-dependent DNA helicase RecG compare
PFLU_RS28725 -1.0 -6.5 DUF2059 domain-containing protein compare
PFLU_RS11830 -1.0 -2.1 hypothetical protein compare
PFLU_RS15410 -1.0 -1.5 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS14775 -1.0 -1.4 enoyl-CoA hydratase compare
PFLU_RS27465 -1.0 -2.6 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
PFLU_RS06165 -1.0 -2.3 hypothetical protein compare
PFLU_RS04660 -1.0 -3.3 division/cell wall cluster transcriptional repressor MraZ compare
PFLU_RS19175 -1.0 -5.0 trigger factor compare
PFLU_RS03995 -1.0 -1.1 hypothetical protein compare
PFLU_RS02460 -1.0 -5.9 alpha/beta fold hydrolase compare
PFLU_RS18410 -1.0 -2.2 response regulator compare
PFLU_RS04505 -1.0 -3.1 hypothetical protein compare
PFLU_RS25595 -1.0 -1.1 exodeoxyribonuclease V subunit gamma compare
PFLU_RS08990 -1.0 -1.1 hypothetical protein compare
PFLU_RS14335 -1.0 -2.0 ABC transporter permease compare
PFLU_RS21240 -1.0 -1.1 hypothetical protein compare
PFLU_RS22010 -1.0 -4.1 threonine-phosphate decarboxylase compare
PFLU_RS07665 -1.0 -1.4 type I DNA topoisomerase compare
PFLU_RS07650 -0.9 -6.4 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS25360 -0.9 -3.8 glutamate 5-kinase compare
PFLU_RS05385 -0.9 -6.2 glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase compare
PFLU_RS27620 -0.9 -7.3 acyl-CoA dehydrogenase compare
PFLU_RS14825 -0.9 -6.1 bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA compare
PFLU_RS13000 -0.9 -7.2 methionine synthase compare
PFLU_RS18585 -0.9 -1.5 high frequency lysogenization protein HflD compare
PFLU_RS05780 -0.9 -6.1 helix-turn-helix transcriptional regulator compare
PFLU_RS13035 -0.9 -2.1 cobalamin biosynthesis protein CobW compare
PFLU_RS29975 -0.9 -1.4 ATP-binding cassette domain-containing protein compare
PFLU_RS27440 -0.9 -3.5 nucleotidyltransferase family protein compare
PFLU_RS17850 -0.9 -2.7 hypothetical protein compare
PFLU_RS02860 -0.9 -1.8 urease subunit beta compare
PFLU_RS22005 -0.9 -5.7 cobyric acid synthase compare
PFLU_RS18910 -0.9 -3.0 MarR family transcriptional regulator compare
PFLU_RS17950 -0.9 -1.5 hypothetical protein compare
PFLU_RS17265 -0.9 -1.4 hypothetical protein compare
PFLU_RS15970 -0.9 -2.1 DUF861 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25-INTG in nitrogen source experiments

For nitrogen source D-Glucose across organisms